Gvermi12185.t1 (polypeptide) Gracilaria vermiculophylla HapMaleFtJ_2017 male

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NameGvermi12185.t1
Unique NameGvermi12185.t1
Typepolypeptide
OrganismGracilaria vermiculophylla HapMaleFtJ_2017 male (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
Sequence length317
Homology
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BLAST of Gvermi12185.t1 vs. uniprot
Match: A0A2V3IYD2_9FLOR (AT-rich interactive domain-containing protein cfi-1 n=1 Tax=Gracilariopsis chorda TaxID=448386 RepID=A0A2V3IYD2_9FLOR)

HSP 1 Score: 285 bits (728), Expect = 1.640e-90
Identity = 140/184 (76.09%), Postives = 159/184 (86.41%), Query Frame = 0 
Query:   32 DDCVELAPGDYTGKLPVDIMNMPVVPCPLIKLGNRVIICGRYSDDQPCVKAANNLGVIMLSKTFSGHLPPHTTCSEDRFLADWKAFHHEIYGLVPKLPTVSGAKLDLFLFAQQILLLGGIDTVVEKRGFVVLAKQLRLSKPCTSAATVLRRAHQSLMHQYEERLLQI-VSTP---VAHPHALVA 211
            DD VELAPGDY+GKLPVDIM MPVVPCPLIKLGNRVIICGRYSD++PCVKAAN+LGV+MLS T++   PP      D F+ADWKAFH+E+YGLVP+LPTVSG+KLDLFLFA+Q+LLLGGIDTV+EKRGFVVLAKQL LSKPCTSAA VLRRAHQSLMHQYE+RL+Q+  +TP     H H  VA
Sbjct:   49 DDHVELAPGDYSGKLPVDIMTMPVVPCPLIKLGNRVIICGRYSDNEPCVKAANSLGVLMLSSTYTNCKPPAAITRRDSFIADWKAFHYEMYGLVPRLPTVSGSKLDLFLFAEQVLLLGGIDTVIEKRGFVVLAKQLCLSKPCTSAAVVLRRAHQSLMHQYEQRLIQLSTATPDQTYLHSHPRVA 232
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BLAST of Gvermi12185.t1 vs. uniprot
Match: A0A2V3J2X0_9FLOR (AT-rich interactive domain-containing protein 2 n=1 Tax=Gracilariopsis chorda TaxID=448386 RepID=A0A2V3J2X0_9FLOR)

HSP 1 Score: 139 bits (349), Expect = 6.240e-33
Identity = 77/154 (50.00%), Postives = 99/154 (64.29%), Query Frame = 0 
Query:   48 VDIMNMPVVPCPLIKLGNRVIICGRYSDDQPCVKAANNLGVIMLSKTFSGHLPPHTTC---SEDR--FLADWKAFHHEIYGLVPKLPTVSGAKLDLFLFAQQILLLGGIDTVVEKRGFVVLAKQLRLSKPCTSAATVLRRAHQSLMHQYEERLL 196
            VDI+++ VV  PL K G   IICGR  D+ P   AA  LG  M+SK  SG      TC   SE R  FL DWKAFH E+ G VPK P + G +LD+F  A ++LLLGG+  VV+KR F V+A+QL L K CTSAA+VL+ A++ L+  YE +L+
Sbjct:  229 VDILSLDVVDSPLQKDGRHTIICGRLPDNNPYAIAARGLGQKMVSKKHSGF----QTCEVESERRLNFLKDWKAFHEELLGYVPKRPVIGGGELDIFSLAHEVLLLGGVLNVVKKRAFRVVAQQLELPKSCTSAASVLKNAYERLLFYYEGKLV 378
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BLAST of Gvermi12185.t1 vs. uniprot
Match: A0A1X6PJV0_PORUM (ARID domain-containing protein n=1 Tax=Porphyra umbilicalis TaxID=2786 RepID=A0A1X6PJV0_PORUM)

HSP 1 Score: 88.6 bits (218), Expect = 1.030e-15
Identity = 55/152 (36.18%), Postives = 80/152 (52.63%), Query Frame = 0 
Query:   59 PLIKLGNRVIICGRYSDDQPCVKAANNLGVIMLSKTFSG---HLPPHTTCS-----------EDRFLADWKAFHHEIYGLVPKLPTVSGAKLDLFLFAQQILLLGGIDTVVEKRGFVVLAKQLRLSKPCTSAATVLRRAHQSLMHQYEERLL 196
            PL K G  ++I GR     P  +A +++G+  +S   SG     PP                E  FLAD  AF  E      K+P V G  L++F    ++  LGG++ V+ KR F V+A +L L + CTSAA VLR AH+SL++ YE++L+
Sbjct:  532 PLRKEGRNLVITGRLPTSSPYQQALDSVGIRFVSAKLSGIGPGAPPXXXXXXXXXXXGVGGREAAFLADHAAFMFERGQASFKVPVVGGGPLNIFRLFVEVCKLGGVENVLNKRAFRVVAGELDLPRTCTSAAFVLRNAHESLLYAYEQKLV 683
The following BLAST results are available for this feature:
BLAST of Gvermi12185.t1 vs. uniprot
Analysis Date: 2022-06-02 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 3
Match NameE-valueIdentityDescription
A0A2V3IYD2_9FLOR1.640e-9076.09AT-rich interactive domain-containing protein cfi-... [more]
A0A2V3J2X0_9FLOR6.240e-3350.00AT-rich interactive domain-containing protein 2 n=... [more]
A0A1X6PJV0_PORUM1.030e-1536.18ARID domain-containing protein n=1 Tax=Porphyra um... [more]
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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-06-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR001606ARID DNA-binding domainSMARTSM00501bright_3coord: 105..197
e-value: 1.6E-5
score: 34.3
IPR001606ARID DNA-binding domainPFAMPF01388ARIDcoord: 107..192
e-value: 1.4E-8
score: 35.3
IPR001606ARID DNA-binding domainPROSITEPS51011ARIDcoord: 104..196
score: 15.083797
NoneNo IPR availableSMARTSM01014ARID_2coord: 101..192
e-value: 1.3E-9
score: 47.9
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 1..29
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 1..32
NoneNo IPR availableCDDcd16100ARIDcoord: 106..192
e-value: 2.05256E-15
score: 68.5384
IPR036431ARID DNA-binding domain superfamilyGENE3D1.10.150.60coord: 99..202
e-value: 5.1E-14
score: 53.7
IPR036431ARID DNA-binding domain superfamilySUPERFAMILY46774ARID-likecoord: 102..196

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
ScGOVlb_3404contigScGOVlb_3404:3778307..3779257 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-06-01
Diamond blastp: OGS1.0 vs UniRef902022-06-02
Gracilaria vermiculophylla HapMaleFtJ_2017 male OGS1.02022-05-09
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
Gvermi12185.t1Gvermi12185.t1Gracilaria vermiculophylla HapMaleFtJ_2017 malemRNAScGOVlb_3404 3778307..3779257 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>Gvermi12185.t1 ID=Gvermi12185.t1|Name=Gvermi12185.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=polypeptide|length=317bp
MSDSPNFLYDSNPSDEERTQSTAAEQSGANNDDCVELAPGDYTGKLPVDI
MNMPVVPCPLIKLGNRVIICGRYSDDQPCVKAANNLGVIMLSKTFSGHLP
PHTTCSEDRFLADWKAFHHEIYGLVPKLPTVSGAKLDLFLFAQQILLLGG
IDTVVEKRGFVVLAKQLRLSKPCTSAATVLRRAHQSLMHQYEERLLQIVS
TPVAHPHALVALKETVACNNEEVQVQSPRRKVRRLDAPHPYTTSLQRAHN
LECDTRIPDSEPPFLPPILREGFETIPRLPPFKMLTSGLALRSGTATKRK
QGATSYLIPKQFDDAS*
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR001606ARID_dom
IPR036431ARID_dom_sf