Gvermi12472.t1 (mRNA) Gracilaria vermiculophylla HapMaleFtJ_2017 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGvermi12472.t1
Unique NameGvermi12472.t1
TypemRNA
OrganismGracilaria vermiculophylla HapMaleFtJ_2017 male (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
Sequence length486
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
ScGOVlb_3404contigScGOVlb_3404:4967791..4969248 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria vermiculophylla HapMaleFtJ_2017 male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog130081.XP_005704380.1
Preferred nameNRT2.2
PFAMsMFS_1
Max annot lvl2759|Eukaryota
KEGG koko:K02575
KEGG TC2.A.1.8
KEGG Pathwayko00910,map00910
KEGG ModuleM00615
GOsGO:0000325,GO:0001101,GO:0003674,GO:0005215,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005773,GO:0005774,GO:0005886,GO:0006810,GO:0006811,GO:0006820,GO:0007275,GO:0008150,GO:0008509,GO:0009507,GO:0009536,GO:0009628,GO:0009705,GO:0009791,GO:0009987,GO:0010035,GO:0010167,GO:0015075,GO:0015103,GO:0015112,GO:0015267,GO:0015291,GO:0015318,GO:0015513,GO:0015698,GO:0015706,GO:0015707,GO:0016020,GO:0022622,GO:0022803,GO:0022804,GO:0022832,GO:0022836,GO:0022857,GO:0031090,GO:0032501,GO:0032502,GO:0032991,GO:0034220,GO:0042221,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0044422,GO:0044424,GO:0044437,GO:0044444,GO:0044446,GO:0044464,GO:0048364,GO:0048527,GO:0048528,GO:0048731,GO:0048856,GO:0050896,GO:0051179,GO:0051234,GO:0051716,GO:0055085,GO:0070887,GO:0071229,GO:0071241,GO:0071249,GO:0071705,GO:0071944,GO:0080167,GO:0090696,GO:0098588,GO:0098656,GO:0098805,GO:0099402,GO:1901698,GO:1901699,GO:1901700,GO:1901701,GO:1902170,GO:1990351
Evalue2.3e-127
EggNOG OGsCOG2223@1|root,2QPIC@2759|Eukaryota
Descriptioncellular response to nitrate
COG categoryP
BRITEko00000,ko00001,ko00002,ko02000
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Gvermi12472Gvermi12472Gracilaria vermiculophylla HapMaleFtJ_2017 malegeneScGOVlb_3404 4967791..4969248 -


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi12472.t1.stop1Gvermi12472.t1.stop1Gracilaria vermiculophylla HapMaleFtJ_2017 malestop_codonScGOVlb_3404 4967791..4967793 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi12472.t1.CDS1Gvermi12472.t1.CDS1Gracilaria vermiculophylla HapMaleFtJ_2017 maleCDSScGOVlb_3404 4967791..4969248 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi12472.t1.exon1Gvermi12472.t1.exon1Gracilaria vermiculophylla HapMaleFtJ_2017 maleexonScGOVlb_3404 4967791..4969248 -


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi12472.t1.start1Gvermi12472.t1.start1Gracilaria vermiculophylla HapMaleFtJ_2017 malestart_codonScGOVlb_3404 4969246..4969248 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi12472.t1Gvermi12472.t1Gracilaria vermiculophylla HapMaleFtJ_2017 malepolypeptideScGOVlb_3404 4967791..4969248 -


Sequences
The following sequences are available for this feature:

mRNA sequence

>Gvermi12472.t1 ID=Gvermi12472.t1|Name=Gvermi12472.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=486bp
MSAPEAASPPTEVPPVDEPKYQFDLPVDEHGKSRVIRLYSFKRPHMRAFH
FAWFSFFLAFFGWFALAPLQEEIRKEGYIDGLVDGRPFKIQNVISVLGTI
VMRLAIGPFCDRFGPRLAQSMLLTVFSLPVFLVATATKYWQWTTARFFIG
FIGAAFVVTQFWTSVMFSGRIVGTANATSGGWGNLGGGVTNILMPQIKRG
MTAAAGGNRNRGWRLAMIFPGIALVLTSAAMFFLSDDLPQGNYKDLHRAG
KKEKTNPFLAMGKAVRNWRVWILFLLYAGCFGVELVMNGNLASYFTKDIE
AFQLPQGTAGLIAGLFGLMNLFARSLGGILSDFLASKFGMRGRLWAFFSV
QLAEGIMFVVFSRIRVLGGAIPALIGFSLFVQMAEGCTFGIVPFVNPPIT
GAVAGIVGAGGNAGAVIGNLFLNTGVQNGISKGFLTLGYIVIGSAFLIPL
LWWPQYGSMFTKPTISPKIVDDEVDEEDKEEVQTS*
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spliced messenger RNA

>Gvermi12472.t1 ID=Gvermi12472.t1|Name=Gvermi12472.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=1458bp|location=Sequence derived from alignment at ScGOVlb_3404:4967791..4969248- (Gracilaria vermiculophylla HapMaleFtJ_2017 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGTCTGCGCCCGAAGCTGCCTCTCCACCCACCGAGGTGCCCCCGGTCGA
CGAACCCAAATACCAGTTTGATCTGCCTGTCGACGAACATGGAAAGTCAA
GGGTCATTCGTCTCTACAGCTTCAAACGCCCGCACATGCGCGCCTTCCAT
TTCGCTTGGTTCTCTTTCTTCCTTGCCTTCTTCGGCTGGTTCGCCCTCGC
CCCTCTCCAAGAAGAAATTAGAAAGGAAGGTTACATCGATGGTCTTGTCG
ACGGTCGGCCCTTCAAAATTCAGAACGTCATCTCTGTGTTGGGTACCATA
GTCATGCGTCTTGCCATTGGTCCGTTCTGTGATCGTTTCGGTCCGCGCCT
TGCGCAGTCCATGCTTCTTACCGTCTTCTCTCTCCCGGTATTCTTGGTTG
CCACTGCTACCAAGTACTGGCAGTGGACTACTGCCCGTTTCTTCATCGGT
TTCATCGGTGCCGCGTTTGTCGTCACCCAGTTCTGGACCTCTGTCATGTT
CTCTGGCAGGATTGTGGGCACAGCCAATGCCACCTCTGGAGGATGGGGAA
ATCTCGGTGGAGGTGTAACCAACATCCTAATGCCCCAGATCAAGAGGGGT
ATGACCGCGGCCGCTGGAGGAAACAGGAACCGTGGCTGGCGTCTGGCTAT
GATCTTTCCAGGTATTGCACTGGTGCTCACCTCTGCTGCAATGTTTTTCC
TCTCCGACGATTTGCCGCAAGGGAACTACAAGGACTTGCATAGGGCCGGT
AAGAAGGAGAAGACGAACCCTTTCTTGGCGATGGGTAAGGCCGTTCGGAA
CTGGAGGGTATGGATTCTCTTCCTGTTGTACGCCGGATGTTTCGGAGTTG
AGCTTGTGATGAACGGCAACCTTGCCTCTTATTTCACCAAAGATATCGAG
GCCTTTCAACTGCCGCAGGGCACTGCTGGATTGATTGCTGGTCTGTTTGG
TCTCATGAACCTCTTCGCGCGGTCTTTGGGTGGTATTCTGTCAGACTTCC
TCGCGTCTAAATTCGGAATGCGTGGACGTCTGTGGGCGTTCTTCTCGGTG
CAGCTGGCTGAAGGTATCATGTTTGTTGTGTTCTCTCGCATCCGTGTATT
GGGTGGTGCTATCCCGGCTCTGATTGGGTTTTCTCTGTTCGTGCAAATGG
CTGAGGGCTGCACTTTCGGTATTGTGCCTTTCGTGAACCCGCCGATCACT
GGTGCCGTGGCCGGTATTGTCGGCGCTGGAGGTAACGCTGGCGCTGTTAT
TGGTAACCTTTTCCTGAACACTGGTGTTCAGAATGGTATTTCCAAAGGTT
TTCTAACGCTTGGTTACATTGTGATTGGCTCTGCATTCCTCATTCCGTTG
CTCTGGTGGCCGCAGTACGGGTCTATGTTCACGAAGCCGACCATCTCTCC
CAAGATTGTGGATGATGAGGTGGACGAGGAGGACAAAGAGGAGGTGCAAA
CGTCCTAA
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protein sequence of Gvermi12472.t1

>Gvermi12472.t1 ID=Gvermi12472.t1|Name=Gvermi12472.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=polypeptide|length=486bp
MSAPEAASPPTEVPPVDEPKYQFDLPVDEHGKSRVIRLYSFKRPHMRAFH
FAWFSFFLAFFGWFALAPLQEEIRKEGYIDGLVDGRPFKIQNVISVLGTI
VMRLAIGPFCDRFGPRLAQSMLLTVFSLPVFLVATATKYWQWTTARFFIG
FIGAAFVVTQFWTSVMFSGRIVGTANATSGGWGNLGGGVTNILMPQIKRG
MTAAAGGNRNRGWRLAMIFPGIALVLTSAAMFFLSDDLPQGNYKDLHRAG
KKEKTNPFLAMGKAVRNWRVWILFLLYAGCFGVELVMNGNLASYFTKDIE
AFQLPQGTAGLIAGLFGLMNLFARSLGGILSDFLASKFGMRGRLWAFFSV
QLAEGIMFVVFSRIRVLGGAIPALIGFSLFVQMAEGCTFGIVPFVNPPIT
GAVAGIVGAGGNAGAVIGNLFLNTGVQNGISKGFLTLGYIVIGSAFLIPL
LWWPQYGSMFTKPTISPKIVDDEVDEEDKEEVQTS*
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mRNA from alignment at ScGOVlb_3404:4967791..4969248-

Legend: polypeptideCDSexonstart_codonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Gvermi12472.t1 ID=Gvermi12472.t1|Name=Gvermi12472.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=1458bp|location=Sequence derived from alignment at ScGOVlb_3404:4967791..4969248- (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
ATGTCTGCGCCCGAAGCTGCCTCTCCACCCACCGAGGTGCCCCCGGTCGA
CGAACCCAAATACCAGTTTGATCTGCCTGTCGACGAACATGGAAAGTCAA
GGGTCATTCGTCTCTACAGCTTCAAACGCCCGCACATGCGCGCCTTCCAT
TTCGCTTGGTTCTCTTTCTTCCTTGCCTTCTTCGGCTGGTTCGCCCTCGC
CCCTCTCCAAGAAGAAATTAGAAAGGAAGGTTACATCGATGGTCTTGTCG
ACGGTCGGCCCTTCAAAATTCAGAACGTCATCTCTGTGTTGGGTACCATA
GTCATGCGTCTTGCCATTGGTCCGTTCTGTGATCGTTTCGGTCCGCGCCT
TGCGCAGTCCATGCTTCTTACCGTCTTCTCTCTCCCGGTATTCTTGGTTG
CCACTGCTACCAAGTACTGGCAGTGGACTACTGCCCGTTTCTTCATCGGT
TTCATCGGTGCCGCGTTTGTCGTCACCCAGTTCTGGACCTCTGTCATGTT
CTCTGGCAGGATTGTGGGCACAGCCAATGCCACCTCTGGAGGATGGGGAA
ATCTCGGTGGAGGTGTAACCAACATCCTAATGCCCCAGATCAAGAGGGGT
ATGACCGCGGCCGCTGGAGGAAACAGGAACCGTGGCTGGCGTCTGGCTAT
GATCTTTCCAGGTATTGCACTGGTGCTCACCTCTGCTGCAATGTTTTTCC
TCTCCGACGATTTGCCGCAAGGGAACTACAAGGACTTGCATAGGGCCGGT
AAGAAGGAGAAGACGAACCCTTTCTTGGCGATGGGTAAGGCCGTTCGGAA
CTGGAGGGTATGGATTCTCTTCCTGTTGTACGCCGGATGTTTCGGAGTTG
AGCTTGTGATGAACGGCAACCTTGCCTCTTATTTCACCAAAGATATCGAG
GCCTTTCAACTGCCGCAGGGCACTGCTGGATTGATTGCTGGTCTGTTTGG
TCTCATGAACCTCTTCGCGCGGTCTTTGGGTGGTATTCTGTCAGACTTCC
TCGCGTCTAAATTCGGAATGCGTGGACGTCTGTGGGCGTTCTTCTCGGTG
CAGCTGGCTGAAGGTATCATGTTTGTTGTGTTCTCTCGCATCCGTGTATT
GGGTGGTGCTATCCCGGCTCTGATTGGGTTTTCTCTGTTCGTGCAAATGG
CTGAGGGCTGCACTTTCGGTATTGTGCCTTTCGTGAACCCGCCGATCACT
GGTGCCGTGGCCGGTATTGTCGGCGCTGGAGGTAACGCTGGCGCTGTTAT
TGGTAACCTTTTCCTGAACACTGGTGTTCAGAATGGTATTTCCAAAGGTT
TTCTAACGCTTGGTTACATTGTGATTGGCTCTGCATTCCTCATTCCGTTG
CTCTGGTGGCCGCAGTACGGGTCTATGTTCACGAAGCCGACCATCTCTCC
CAAGATTGTGGATGATGAGGTGGACGAGGAGGACAAAGAGGAGGTGCAAA
CGTCCTAA
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Coding sequence (CDS) from alignment at ScGOVlb_3404:4967791..4969248-

>Gvermi12472.t1 ID=Gvermi12472.t1|Name=Gvermi12472.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=CDS|length=1458bp|location=Sequence derived from alignment at ScGOVlb_3404:4967791..4969248- (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
ATGTCTGCGCCCGAAGCTGCCTCTCCACCCACCGAGGTGCCCCCGGTCGA
CGAACCCAAATACCAGTTTGATCTGCCTGTCGACGAACATGGAAAGTCAA
GGGTCATTCGTCTCTACAGCTTCAAACGCCCGCACATGCGCGCCTTCCAT
TTCGCTTGGTTCTCTTTCTTCCTTGCCTTCTTCGGCTGGTTCGCCCTCGC
CCCTCTCCAAGAAGAAATTAGAAAGGAAGGTTACATCGATGGTCTTGTCG
ACGGTCGGCCCTTCAAAATTCAGAACGTCATCTCTGTGTTGGGTACCATA
GTCATGCGTCTTGCCATTGGTCCGTTCTGTGATCGTTTCGGTCCGCGCCT
TGCGCAGTCCATGCTTCTTACCGTCTTCTCTCTCCCGGTATTCTTGGTTG
CCACTGCTACCAAGTACTGGCAGTGGACTACTGCCCGTTTCTTCATCGGT
TTCATCGGTGCCGCGTTTGTCGTCACCCAGTTCTGGACCTCTGTCATGTT
CTCTGGCAGGATTGTGGGCACAGCCAATGCCACCTCTGGAGGATGGGGAA
ATCTCGGTGGAGGTGTAACCAACATCCTAATGCCCCAGATCAAGAGGGGT
ATGACCGCGGCCGCTGGAGGAAACAGGAACCGTGGCTGGCGTCTGGCTAT
GATCTTTCCAGGTATTGCACTGGTGCTCACCTCTGCTGCAATGTTTTTCC
TCTCCGACGATTTGCCGCAAGGGAACTACAAGGACTTGCATAGGGCCGGT
AAGAAGGAGAAGACGAACCCTTTCTTGGCGATGGGTAAGGCCGTTCGGAA
CTGGAGGGTATGGATTCTCTTCCTGTTGTACGCCGGATGTTTCGGAGTTG
AGCTTGTGATGAACGGCAACCTTGCCTCTTATTTCACCAAAGATATCGAG
GCCTTTCAACTGCCGCAGGGCACTGCTGGATTGATTGCTGGTCTGTTTGG
TCTCATGAACCTCTTCGCGCGGTCTTTGGGTGGTATTCTGTCAGACTTCC
TCGCGTCTAAATTCGGAATGCGTGGACGTCTGTGGGCGTTCTTCTCGGTG
CAGCTGGCTGAAGGTATCATGTTTGTTGTGTTCTCTCGCATCCGTGTATT
GGGTGGTGCTATCCCGGCTCTGATTGGGTTTTCTCTGTTCGTGCAAATGG
CTGAGGGCTGCACTTTCGGTATTGTGCCTTTCGTGAACCCGCCGATCACT
GGTGCCGTGGCCGGTATTGTCGGCGCTGGAGGTAACGCTGGCGCTGTTAT
TGGTAACCTTTTCCTGAACACTGGTGTTCAGAATGGTATTTCCAAAGGTT
TTCTAACGCTTGGTTACATTGTGATTGGCTCTGCATTCCTCATTCCGTTG
CTCTGGTGGCCGCAGTACGGGTCTATGTTCACGAAGCCGACCATCTCTCC
CAAGATTGTGGATGATGAGGTGGACGAGGAGGACAAAGAGGAGGTGCAAA
CGTCCTAA
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