Gvermi12435.t1 (mRNA) Gracilaria vermiculophylla HapMaleFtJ_2017 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGvermi12435.t1
Unique NameGvermi12435.t1
TypemRNA
OrganismGracilaria vermiculophylla HapMaleFtJ_2017 male (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
Sequence length335
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
ScGOVlb_3404contigScGOVlb_3404:4736614..4737618 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria vermiculophylla HapMaleFtJ_2017 male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog28583.AMAG_08083T0
PFAMsEamA
Max annot lvl4751|Fungi
GOsGO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0016020,GO:0016021,GO:0031224,GO:0044424,GO:0044425,GO:0044464
Evalue7.91e-17
EggNOG OGsCOG0697@1|root,KOG4510@2759|Eukaryota,395GA@33154|Opisthokonta,3NUM2@4751|Fungi
DescriptionDUF6-domain-containing protein
COG categoryEG
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Gvermi12435Gvermi12435Gracilaria vermiculophylla HapMaleFtJ_2017 malegeneScGOVlb_3404 4736614..4737618 -


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi12435.t1.stop1Gvermi12435.t1.stop1Gracilaria vermiculophylla HapMaleFtJ_2017 malestop_codonScGOVlb_3404 4736614..4736616 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi12435.t1.CDS1Gvermi12435.t1.CDS1Gracilaria vermiculophylla HapMaleFtJ_2017 maleCDSScGOVlb_3404 4736614..4737618 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi12435.t1.exon1Gvermi12435.t1.exon1Gracilaria vermiculophylla HapMaleFtJ_2017 maleexonScGOVlb_3404 4736614..4737618 -


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi12435.t1.start1Gvermi12435.t1.start1Gracilaria vermiculophylla HapMaleFtJ_2017 malestart_codonScGOVlb_3404 4737616..4737618 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi12435.t1Gvermi12435.t1Gracilaria vermiculophylla HapMaleFtJ_2017 malepolypeptideScGOVlb_3404 4736614..4737618 -


Sequences
The following sequences are available for this feature:

mRNA sequence

>Gvermi12435.t1 ID=Gvermi12435.t1|Name=Gvermi12435.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=335bp
MGEQDGKSGEESPLLTGKVANINDAVLTEQRGYVYMALGAVLWSLLGFFV
HIGATKYKFPVVASVFIRAVFNGSLSAAYIATHKDEVKLPTRSQTVLLLV
RGTASACGCFCAFSALERLGIGTAITMFSTSPVITTLLSAVFLRELPTAV
DVGALVCSFVGVVFVANPSFLVGAGAALMADGEHVAGVVYALGVALCGST
VFVVIRHMGVRVHFMLNVISPAMCMGVLALSLSDANVWAQLGGNGAGLAL
NVVGALCGFGGVLCAVFGLQRCRAGPAMIVRTIDVPFTFLLGYLFLGESV
SAPAALGVVLVVLAAVLVGVEKVFEAQGAPRSTR*
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spliced messenger RNA

>Gvermi12435.t1 ID=Gvermi12435.t1|Name=Gvermi12435.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=1005bp|location=Sequence derived from alignment at ScGOVlb_3404:4736614..4737618- (Gracilaria vermiculophylla HapMaleFtJ_2017 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGGGCGAGCAAGACGGAAAATCAGGCGAAGAGTCTCCGCTTCTCACTGG
CAAGGTTGCAAACATCAACGATGCGGTGCTCACAGAACAAAGAGGGTATG
TTTACATGGCACTTGGGGCCGTGCTTTGGTCGCTACTAGGCTTCTTCGTA
CATATTGGTGCAACCAAGTACAAGTTTCCCGTGGTTGCATCCGTTTTCAT
CAGAGCAGTTTTTAACGGCTCGCTGTCCGCGGCGTACATAGCGACGCACA
AAGATGAGGTGAAGTTGCCAACGCGGTCGCAGACGGTGTTACTGCTGGTG
CGAGGCACGGCGAGTGCGTGCGGATGTTTTTGCGCGTTTTCGGCGCTAGA
GCGGCTTGGGATCGGAACTGCCATCACGATGTTCTCCACGAGCCCCGTGA
TCACGACGTTGCTGAGCGCGGTGTTTCTGCGAGAGCTGCCCACGGCAGTG
GACGTCGGGGCGCTGGTGTGCAGTTTCGTGGGGGTGGTATTCGTGGCAAA
TCCATCGTTTCTGGTTGGAGCGGGCGCAGCATTGATGGCGGACGGGGAGC
ACGTTGCCGGCGTGGTTTACGCGCTGGGCGTTGCGCTCTGCGGGTCGACT
GTGTTCGTGGTGATACGGCACATGGGCGTGCGGGTGCATTTCATGCTCAA
CGTGATTTCGCCGGCGATGTGCATGGGGGTGCTGGCGCTGTCGCTTTCGG
ACGCGAACGTGTGGGCGCAGCTCGGCGGCAACGGCGCCGGGCTGGCGCTC
AACGTGGTGGGGGCGCTGTGCGGCTTTGGGGGCGTTCTGTGCGCGGTGTT
CGGGCTGCAGCGCTGCCGCGCAGGCCCGGCGATGATTGTGCGCACAATCG
ACGTGCCGTTCACGTTTCTGCTGGGCTACCTGTTCCTAGGCGAAAGCGTA
TCGGCGCCAGCGGCGCTGGGCGTCGTTCTGGTCGTGCTCGCGGCCGTGCT
CGTCGGGGTCGAGAAGGTGTTCGAGGCACAGGGCGCGCCGCGCTCGACGA
GGTGA
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protein sequence of Gvermi12435.t1

>Gvermi12435.t1 ID=Gvermi12435.t1|Name=Gvermi12435.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=polypeptide|length=335bp
MGEQDGKSGEESPLLTGKVANINDAVLTEQRGYVYMALGAVLWSLLGFFV
HIGATKYKFPVVASVFIRAVFNGSLSAAYIATHKDEVKLPTRSQTVLLLV
RGTASACGCFCAFSALERLGIGTAITMFSTSPVITTLLSAVFLRELPTAV
DVGALVCSFVGVVFVANPSFLVGAGAALMADGEHVAGVVYALGVALCGST
VFVVIRHMGVRVHFMLNVISPAMCMGVLALSLSDANVWAQLGGNGAGLAL
NVVGALCGFGGVLCAVFGLQRCRAGPAMIVRTIDVPFTFLLGYLFLGESV
SAPAALGVVLVVLAAVLVGVEKVFEAQGAPRSTR*
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mRNA from alignment at ScGOVlb_3404:4736614..4737618-

Legend: polypeptideCDSexonstart_codonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Gvermi12435.t1 ID=Gvermi12435.t1|Name=Gvermi12435.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=1005bp|location=Sequence derived from alignment at ScGOVlb_3404:4736614..4737618- (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
ATGGGCGAGCAAGACGGAAAATCAGGCGAAGAGTCTCCGCTTCTCACTGG
CAAGGTTGCAAACATCAACGATGCGGTGCTCACAGAACAAAGAGGGTATG
TTTACATGGCACTTGGGGCCGTGCTTTGGTCGCTACTAGGCTTCTTCGTA
CATATTGGTGCAACCAAGTACAAGTTTCCCGTGGTTGCATCCGTTTTCAT
CAGAGCAGTTTTTAACGGCTCGCTGTCCGCGGCGTACATAGCGACGCACA
AAGATGAGGTGAAGTTGCCAACGCGGTCGCAGACGGTGTTACTGCTGGTG
CGAGGCACGGCGAGTGCGTGCGGATGTTTTTGCGCGTTTTCGGCGCTAGA
GCGGCTTGGGATCGGAACTGCCATCACGATGTTCTCCACGAGCCCCGTGA
TCACGACGTTGCTGAGCGCGGTGTTTCTGCGAGAGCTGCCCACGGCAGTG
GACGTCGGGGCGCTGGTGTGCAGTTTCGTGGGGGTGGTATTCGTGGCAAA
TCCATCGTTTCTGGTTGGAGCGGGCGCAGCATTGATGGCGGACGGGGAGC
ACGTTGCCGGCGTGGTTTACGCGCTGGGCGTTGCGCTCTGCGGGTCGACT
GTGTTCGTGGTGATACGGCACATGGGCGTGCGGGTGCATTTCATGCTCAA
CGTGATTTCGCCGGCGATGTGCATGGGGGTGCTGGCGCTGTCGCTTTCGG
ACGCGAACGTGTGGGCGCAGCTCGGCGGCAACGGCGCCGGGCTGGCGCTC
AACGTGGTGGGGGCGCTGTGCGGCTTTGGGGGCGTTCTGTGCGCGGTGTT
CGGGCTGCAGCGCTGCCGCGCAGGCCCGGCGATGATTGTGCGCACAATCG
ACGTGCCGTTCACGTTTCTGCTGGGCTACCTGTTCCTAGGCGAAAGCGTA
TCGGCGCCAGCGGCGCTGGGCGTCGTTCTGGTCGTGCTCGCGGCCGTGCT
CGTCGGGGTCGAGAAGGTGTTCGAGGCACAGGGCGCGCCGCGCTCGACGA
GGTGA
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Coding sequence (CDS) from alignment at ScGOVlb_3404:4736614..4737618-

>Gvermi12435.t1 ID=Gvermi12435.t1|Name=Gvermi12435.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=CDS|length=1005bp|location=Sequence derived from alignment at ScGOVlb_3404:4736614..4737618- (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
ATGGGCGAGCAAGACGGAAAATCAGGCGAAGAGTCTCCGCTTCTCACTGG
CAAGGTTGCAAACATCAACGATGCGGTGCTCACAGAACAAAGAGGGTATG
TTTACATGGCACTTGGGGCCGTGCTTTGGTCGCTACTAGGCTTCTTCGTA
CATATTGGTGCAACCAAGTACAAGTTTCCCGTGGTTGCATCCGTTTTCAT
CAGAGCAGTTTTTAACGGCTCGCTGTCCGCGGCGTACATAGCGACGCACA
AAGATGAGGTGAAGTTGCCAACGCGGTCGCAGACGGTGTTACTGCTGGTG
CGAGGCACGGCGAGTGCGTGCGGATGTTTTTGCGCGTTTTCGGCGCTAGA
GCGGCTTGGGATCGGAACTGCCATCACGATGTTCTCCACGAGCCCCGTGA
TCACGACGTTGCTGAGCGCGGTGTTTCTGCGAGAGCTGCCCACGGCAGTG
GACGTCGGGGCGCTGGTGTGCAGTTTCGTGGGGGTGGTATTCGTGGCAAA
TCCATCGTTTCTGGTTGGAGCGGGCGCAGCATTGATGGCGGACGGGGAGC
ACGTTGCCGGCGTGGTTTACGCGCTGGGCGTTGCGCTCTGCGGGTCGACT
GTGTTCGTGGTGATACGGCACATGGGCGTGCGGGTGCATTTCATGCTCAA
CGTGATTTCGCCGGCGATGTGCATGGGGGTGCTGGCGCTGTCGCTTTCGG
ACGCGAACGTGTGGGCGCAGCTCGGCGGCAACGGCGCCGGGCTGGCGCTC
AACGTGGTGGGGGCGCTGTGCGGCTTTGGGGGCGTTCTGTGCGCGGTGTT
CGGGCTGCAGCGCTGCCGCGCAGGCCCGGCGATGATTGTGCGCACAATCG
ACGTGCCGTTCACGTTTCTGCTGGGCTACCTGTTCCTAGGCGAAAGCGTA
TCGGCGCCAGCGGCGCTGGGCGTCGTTCTGGTCGTGCTCGCGGCCGTGCT
CGTCGGGGTCGAGAAGGTGTTCGAGGCACAGGGCGCGCCGCGCTCGACGA
GGTGA
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