Gvermi12360.t1 (mRNA) Gracilaria vermiculophylla HapMaleFtJ_2017 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGvermi12360.t1
Unique NameGvermi12360.t1
TypemRNA
OrganismGracilaria vermiculophylla HapMaleFtJ_2017 male (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
Sequence length447
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
ScGOVlb_3404contigScGOVlb_3404:4362014..4363354 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria vermiculophylla HapMaleFtJ_2017 male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog218851.Aquca_009_00332.1
PFAMsPyr_redox_2
Max annot lvl35493|Streptophyta
KEGG koko:K18914
GOsGO:0000166,GO:0003674,GO:0003824,GO:0005488,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005739,GO:0005886,GO:0006091,GO:0008150,GO:0008152,GO:0009987,GO:0016020,GO:0016491,GO:0016730,GO:0016731,GO:0022900,GO:0036094,GO:0043167,GO:0043168,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0044237,GO:0044424,GO:0044444,GO:0044464,GO:0048037,GO:0050660,GO:0050662,GO:0055114,GO:0071944,GO:0097159,GO:1901265,GO:1901363
Evalue3.61e-61
EggNOG OGsCOG0493@1|root,KOG1800@2759|Eukaryota,37QSZ@33090|Viridiplantae,3GB49@35493|Streptophyta
EC1.18.1.6
DescriptionNADPH adrenodoxin oxidoreductase, mitochondrial
COG categoryC
BRITEko00000,ko01000,ko03029
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Gvermi12360Gvermi12360Gracilaria vermiculophylla HapMaleFtJ_2017 malegeneScGOVlb_3404 4362014..4363354 -


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi12360.t1.stop1Gvermi12360.t1.stop1Gracilaria vermiculophylla HapMaleFtJ_2017 malestop_codonScGOVlb_3404 4362014..4362016 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi12360.t1.CDS1Gvermi12360.t1.CDS1Gracilaria vermiculophylla HapMaleFtJ_2017 maleCDSScGOVlb_3404 4362014..4363354 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi12360.t1.exon1Gvermi12360.t1.exon1Gracilaria vermiculophylla HapMaleFtJ_2017 maleexonScGOVlb_3404 4362014..4363354 -


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi12360.t1.start1Gvermi12360.t1.start1Gracilaria vermiculophylla HapMaleFtJ_2017 malestart_codonScGOVlb_3404 4363352..4363354 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi12360.t1Gvermi12360.t1Gracilaria vermiculophylla HapMaleFtJ_2017 malepolypeptideScGOVlb_3404 4362014..4363354 -


Sequences
The following sequences are available for this feature:

mRNA sequence

>Gvermi12360.t1 ID=Gvermi12360.t1|Name=Gvermi12360.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=447bp
MRAAVVGAGPAGIYAAQSLLKRFPTCIVDIIERLPVPFGLVRYGVSPDHP
ATKNVINLFSTFIRSNRDRINFFGNVPVGDGHLITSKRIEQLYDISVYAT
GAERPRGLTDISIPSQFVYGAQDFAFWANGHPYVCDPSIPNYLSSRLERD
LKSANDVAVVGIGNVAIDVARILLRPVADLYHTDVSQSALELLSQSSIKS
VTLFGRKSPLDAAWTTSALREIVTKIPSIVTSCDHSLVQADLDTPSLSRT
KKSMLKILKQNTIDSKSAELHRYEISGSKILRLEFLKSVASFGINKGDSV
RMRLKQNQTKQNQDGSEDHSLIEMDQVFGVVFLSLGYVGGQGPGLRVGWA
NGNASGIIGDNKWDAETVISTLPRSVLRHSKSPGISGLLDSEGVNYVTWE
GWEHIDTVEQQRAERCGRKHGRVKLETIQEMLQVANQNAQEMLESR*
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spliced messenger RNA

>Gvermi12360.t1 ID=Gvermi12360.t1|Name=Gvermi12360.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=1341bp|location=Sequence derived from alignment at ScGOVlb_3404:4362014..4363354- (Gracilaria vermiculophylla HapMaleFtJ_2017 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGCGCGCTGCGGTCGTTGGTGCGGGTCCTGCAGGCATCTACGCCGCCCA
ATCCTTATTGAAACGCTTCCCGACGTGCATAGTAGACATAATCGAACGTC
TCCCCGTGCCGTTTGGGCTCGTTCGATACGGAGTTTCTCCCGACCATCCG
GCAACGAAGAATGTCATCAACTTATTTTCAACCTTCATCCGTTCAAACCG
CGATCGAATCAACTTCTTTGGAAACGTTCCAGTTGGTGATGGACACTTGA
TTACTTCGAAGCGGATTGAGCAACTTTACGACATCAGTGTTTATGCCACG
GGAGCGGAGCGTCCCCGAGGTCTCACTGATATTTCTATACCCTCTCAGTT
TGTCTATGGCGCTCAGGATTTTGCGTTTTGGGCAAATGGTCATCCTTACG
TGTGTGATCCCTCTATTCCAAATTATCTTTCCAGCCGATTAGAGCGCGAT
TTGAAGTCTGCGAACGACGTTGCCGTCGTTGGTATTGGGAATGTAGCAAT
TGATGTCGCGCGGATCTTGCTTCGCCCAGTTGCAGACTTGTATCATACAG
ATGTATCGCAGTCTGCCCTAGAACTTTTATCACAATCGTCAATCAAATCG
GTAACTCTTTTCGGCCGCAAGTCTCCTCTGGATGCCGCGTGGACAACCTC
TGCACTGCGAGAGATCGTCACAAAGATTCCGTCTATCGTTACGTCGTGTG
ACCACTCTCTTGTTCAAGCTGACCTCGATACACCAAGTCTTTCTAGAACG
AAGAAGTCTATGTTGAAAATCTTGAAGCAAAACACAATTGATTCTAAGTC
TGCGGAGCTTCATCGTTATGAGATAAGTGGCTCCAAAATTCTGCGTCTTG
AGTTTCTGAAATCTGTGGCCTCGTTTGGAATAAATAAAGGTGATAGCGTT
AGAATGCGACTCAAACAAAATCAAACCAAACAGAATCAAGACGGGTCTGA
AGATCATTCGCTTATTGAAATGGACCAAGTTTTCGGCGTTGTGTTTCTAA
GTTTGGGTTATGTTGGTGGACAAGGTCCAGGCCTCAGAGTTGGGTGGGCG
AATGGTAACGCTTCAGGAATCATTGGAGACAATAAATGGGACGCCGAAAC
CGTCATCAGCACACTTCCGCGATCTGTATTGCGACACTCTAAATCACCTG
GGATATCTGGCTTACTCGATTCAGAGGGCGTTAACTACGTAACATGGGAA
GGGTGGGAACACATTGACACAGTTGAACAACAACGAGCCGAACGGTGTGG
TAGAAAGCACGGTCGGGTTAAGCTAGAAACTATTCAAGAAATGTTGCAAG
TTGCAAATCAAAACGCACAAGAGATGTTAGAATCTCGGTGA
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protein sequence of Gvermi12360.t1

>Gvermi12360.t1 ID=Gvermi12360.t1|Name=Gvermi12360.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=polypeptide|length=447bp
MRAAVVGAGPAGIYAAQSLLKRFPTCIVDIIERLPVPFGLVRYGVSPDHP
ATKNVINLFSTFIRSNRDRINFFGNVPVGDGHLITSKRIEQLYDISVYAT
GAERPRGLTDISIPSQFVYGAQDFAFWANGHPYVCDPSIPNYLSSRLERD
LKSANDVAVVGIGNVAIDVARILLRPVADLYHTDVSQSALELLSQSSIKS
VTLFGRKSPLDAAWTTSALREIVTKIPSIVTSCDHSLVQADLDTPSLSRT
KKSMLKILKQNTIDSKSAELHRYEISGSKILRLEFLKSVASFGINKGDSV
RMRLKQNQTKQNQDGSEDHSLIEMDQVFGVVFLSLGYVGGQGPGLRVGWA
NGNASGIIGDNKWDAETVISTLPRSVLRHSKSPGISGLLDSEGVNYVTWE
GWEHIDTVEQQRAERCGRKHGRVKLETIQEMLQVANQNAQEMLESR*
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mRNA from alignment at ScGOVlb_3404:4362014..4363354-

Legend: polypeptideCDSexonstart_codonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Gvermi12360.t1 ID=Gvermi12360.t1|Name=Gvermi12360.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=1341bp|location=Sequence derived from alignment at ScGOVlb_3404:4362014..4363354- (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
ATGCGCGCTGCGGTCGTTGGTGCGGGTCCTGCAGGCATCTACGCCGCCCA
ATCCTTATTGAAACGCTTCCCGACGTGCATAGTAGACATAATCGAACGTC
TCCCCGTGCCGTTTGGGCTCGTTCGATACGGAGTTTCTCCCGACCATCCG
GCAACGAAGAATGTCATCAACTTATTTTCAACCTTCATCCGTTCAAACCG
CGATCGAATCAACTTCTTTGGAAACGTTCCAGTTGGTGATGGACACTTGA
TTACTTCGAAGCGGATTGAGCAACTTTACGACATCAGTGTTTATGCCACG
GGAGCGGAGCGTCCCCGAGGTCTCACTGATATTTCTATACCCTCTCAGTT
TGTCTATGGCGCTCAGGATTTTGCGTTTTGGGCAAATGGTCATCCTTACG
TGTGTGATCCCTCTATTCCAAATTATCTTTCCAGCCGATTAGAGCGCGAT
TTGAAGTCTGCGAACGACGTTGCCGTCGTTGGTATTGGGAATGTAGCAAT
TGATGTCGCGCGGATCTTGCTTCGCCCAGTTGCAGACTTGTATCATACAG
ATGTATCGCAGTCTGCCCTAGAACTTTTATCACAATCGTCAATCAAATCG
GTAACTCTTTTCGGCCGCAAGTCTCCTCTGGATGCCGCGTGGACAACCTC
TGCACTGCGAGAGATCGTCACAAAGATTCCGTCTATCGTTACGTCGTGTG
ACCACTCTCTTGTTCAAGCTGACCTCGATACACCAAGTCTTTCTAGAACG
AAGAAGTCTATGTTGAAAATCTTGAAGCAAAACACAATTGATTCTAAGTC
TGCGGAGCTTCATCGTTATGAGATAAGTGGCTCCAAAATTCTGCGTCTTG
AGTTTCTGAAATCTGTGGCCTCGTTTGGAATAAATAAAGGTGATAGCGTT
AGAATGCGACTCAAACAAAATCAAACCAAACAGAATCAAGACGGGTCTGA
AGATCATTCGCTTATTGAAATGGACCAAGTTTTCGGCGTTGTGTTTCTAA
GTTTGGGTTATGTTGGTGGACAAGGTCCAGGCCTCAGAGTTGGGTGGGCG
AATGGTAACGCTTCAGGAATCATTGGAGACAATAAATGGGACGCCGAAAC
CGTCATCAGCACACTTCCGCGATCTGTATTGCGACACTCTAAATCACCTG
GGATATCTGGCTTACTCGATTCAGAGGGCGTTAACTACGTAACATGGGAA
GGGTGGGAACACATTGACACAGTTGAACAACAACGAGCCGAACGGTGTGG
TAGAAAGCACGGTCGGGTTAAGCTAGAAACTATTCAAGAAATGTTGCAAG
TTGCAAATCAAAACGCACAAGAGATGTTAGAATCTCGGTGA
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Coding sequence (CDS) from alignment at ScGOVlb_3404:4362014..4363354-

>Gvermi12360.t1 ID=Gvermi12360.t1|Name=Gvermi12360.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=CDS|length=1341bp|location=Sequence derived from alignment at ScGOVlb_3404:4362014..4363354- (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
ATGCGCGCTGCGGTCGTTGGTGCGGGTCCTGCAGGCATCTACGCCGCCCA
ATCCTTATTGAAACGCTTCCCGACGTGCATAGTAGACATAATCGAACGTC
TCCCCGTGCCGTTTGGGCTCGTTCGATACGGAGTTTCTCCCGACCATCCG
GCAACGAAGAATGTCATCAACTTATTTTCAACCTTCATCCGTTCAAACCG
CGATCGAATCAACTTCTTTGGAAACGTTCCAGTTGGTGATGGACACTTGA
TTACTTCGAAGCGGATTGAGCAACTTTACGACATCAGTGTTTATGCCACG
GGAGCGGAGCGTCCCCGAGGTCTCACTGATATTTCTATACCCTCTCAGTT
TGTCTATGGCGCTCAGGATTTTGCGTTTTGGGCAAATGGTCATCCTTACG
TGTGTGATCCCTCTATTCCAAATTATCTTTCCAGCCGATTAGAGCGCGAT
TTGAAGTCTGCGAACGACGTTGCCGTCGTTGGTATTGGGAATGTAGCAAT
TGATGTCGCGCGGATCTTGCTTCGCCCAGTTGCAGACTTGTATCATACAG
ATGTATCGCAGTCTGCCCTAGAACTTTTATCACAATCGTCAATCAAATCG
GTAACTCTTTTCGGCCGCAAGTCTCCTCTGGATGCCGCGTGGACAACCTC
TGCACTGCGAGAGATCGTCACAAAGATTCCGTCTATCGTTACGTCGTGTG
ACCACTCTCTTGTTCAAGCTGACCTCGATACACCAAGTCTTTCTAGAACG
AAGAAGTCTATGTTGAAAATCTTGAAGCAAAACACAATTGATTCTAAGTC
TGCGGAGCTTCATCGTTATGAGATAAGTGGCTCCAAAATTCTGCGTCTTG
AGTTTCTGAAATCTGTGGCCTCGTTTGGAATAAATAAAGGTGATAGCGTT
AGAATGCGACTCAAACAAAATCAAACCAAACAGAATCAAGACGGGTCTGA
AGATCATTCGCTTATTGAAATGGACCAAGTTTTCGGCGTTGTGTTTCTAA
GTTTGGGTTATGTTGGTGGACAAGGTCCAGGCCTCAGAGTTGGGTGGGCG
AATGGTAACGCTTCAGGAATCATTGGAGACAATAAATGGGACGCCGAAAC
CGTCATCAGCACACTTCCGCGATCTGTATTGCGACACTCTAAATCACCTG
GGATATCTGGCTTACTCGATTCAGAGGGCGTTAACTACGTAACATGGGAA
GGGTGGGAACACATTGACACAGTTGAACAACAACGAGCCGAACGGTGTGG
TAGAAAGCACGGTCGGGTTAAGCTAGAAACTATTCAAGAAATGTTGCAAG
TTGCAAATCAAAACGCACAAGAGATGTTAGAATCTCGGTGA
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