Gvermi12313.t1 (mRNA) Gracilaria vermiculophylla HapMaleFtJ_2017 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	Gvermi12313.t1
Unique Name	Gvermi12313.t1
Type	mRNA
Organism	Gracilaria vermiculophylla HapMaleFtJ_2017 male (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
Sequence length	693

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
ScGOVlb_3404	contig	ScGOVlb_3404:4170738..4172816 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gracilaria vermiculophylla HapMaleFtJ_2017 male OGS1.0	2022-05-09

Properties


Property Name	Value
Seed ortholog	926550.CLDAP_23770
PFAMs	PD40
Max annot lvl	2\|Bacteria
KEGG ko	ko:K03641
KEGG TC	2.C.1.2
Evalue	1.55e-10
EggNOG OGs	COG0823@1\|root,COG0823@2\|Bacteria
Description	Involved in the tonB-independent uptake of proteins
COG category	U
BRITE	ko00000,ko02000

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
Gvermi12313	Gvermi12313	Gracilaria vermiculophylla HapMaleFtJ_2017 male	gene	ScGOVlb_3404 4170738..4172816 +

The following start_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gvermi12313.t1.start1	Gvermi12313.t1.start1	Gracilaria vermiculophylla HapMaleFtJ_2017 male	start_codon	ScGOVlb_3404 4170738..4170740 +

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gvermi12313.t1.CDS1	Gvermi12313.t1.CDS1	Gracilaria vermiculophylla HapMaleFtJ_2017 male	CDS	ScGOVlb_3404 4170738..4172816 +

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gvermi12313.t1.exon1	Gvermi12313.t1.exon1	Gracilaria vermiculophylla HapMaleFtJ_2017 male	exon	ScGOVlb_3404 4170738..4172816 +

The following stop_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gvermi12313.t1.stop1	Gvermi12313.t1.stop1	Gracilaria vermiculophylla HapMaleFtJ_2017 male	stop_codon	ScGOVlb_3404 4172814..4172816 +

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gvermi12313.t1	Gvermi12313.t1	Gracilaria vermiculophylla HapMaleFtJ_2017 male	polypeptide	ScGOVlb_3404 4170738..4172816 +

Sequences

The following sequences are available for this feature:

mRNA sequence
mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at ScGOVlb_3404:4170738..4172816+
coding sequence from alignment at ScGOVlb_3404:4170738..4172816+

mRNA sequence

>Gvermi12313.t1 ID=Gvermi12313.t1|Name=Gvermi12313.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=693bp
MTSRREVRESVGVPTQERLLRLERALAAAILQERYSDAASLRDALQAART
SDPLLAKRAELQAAVDSERFLEAARLRDELATLTERFSKRDAGRRVDRII
VLRGRAEPDKALRAATVSRDGAVQLGLVPEISEKNAPPRVYLQPTWSPSG
DFVAVTEISFSIDLSRLGRGVAIADSSARIIVMNAFDGSVVRSVPFTKPP
FFYFWSPDGRRLTLLSNDQGSTATTVALSAIQVVAPPGGGGLDMDTVTGP
LATGHPFLYDICPRDSNKTVVHMGDKSTVAVVPISSFDREHKGLTTKAGS
FGAPQWHPNAGKDGREVVLFVERDNVLKSDSFLGQGAAKNKANPELMQKG
QQKNGGKSDSDKAEAFEKFLVSSTSLLESVLRKGAESLGLAPKSDKSESK
VAENEPTVDPTAQEAEDDGELKEKIRRLLPKKPPAIRDQHWSEPYVTESM
ANRLVMCDVENPELRRVIARFTGIMAFKLSPNGKYLATLVTNPTTGADEL
TICTGDFSADTVVEPRPQGHMRKGQSEADIILSTPYTRVLAFFWSPDSSK
MLFLTSLRGSRVGAAQWATFDLESNKVVRYEKFIMSGIYMHCLNFFDQFA
TSMTPWSPDSDAFCYPGRALTPAEIEKDQNPAPTAAPALSALFMQRDNSA
EGKRFNARVQNVPVTTSSMGKVEAEAPVTIVENVEYACWSPC*

spliced messenger RNA

>Gvermi12313.t1 ID=Gvermi12313.t1|Name=Gvermi12313.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=2079bp|location=Sequence derived from alignment at ScGOVlb_3404:4170738..4172816+ (Gracilaria vermiculophylla HapMaleFtJ_2017 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGACCTCGCGTCGTGAGGTTCGCGAATCCGTCGGCGTCCCCACACAGGA
GCGCCTCTTACGACTCGAGCGCGCTCTCGCTGCCGCCATTCTACAGGAGC
GTTATTCAGATGCTGCAAGCTTGCGCGATGCTCTGCAGGCTGCCCGCACA
TCCGATCCCTTGCTTGCCAAGCGCGCCGAGCTGCAAGCCGCTGTCGACAG
CGAGCGTTTCCTCGAAGCAGCCCGTCTGCGCGACGAGCTCGCCACCCTAA
CCGAACGCTTTTCGAAGCGTGATGCCGGAAGACGTGTCGACCGTATCATT
GTTCTTCGAGGTCGTGCCGAGCCAGACAAGGCGCTGCGCGCCGCAACTGT
GTCAAGAGATGGTGCCGTACAGCTAGGACTCGTCCCCGAAATCTCCGAAA
AGAACGCACCGCCCAGGGTGTACCTGCAACCAACATGGTCACCGAGCGGC
GATTTTGTTGCCGTCACGGAGATATCCTTCAGCATTGACTTGAGCAGACT
GGGACGAGGCGTCGCTATCGCAGATAGTTCGGCCAGAATTATTGTCATGA
ATGCCTTTGATGGAAGTGTTGTTCGCTCCGTCCCGTTCACAAAGCCACCA
TTCTTTTACTTTTGGAGTCCAGACGGTCGCCGCCTCACGCTTTTATCGAA
TGATCAGGGATCGACGGCGACTACGGTTGCTTTGTCTGCAATTCAGGTGG
TGGCGCCGCCAGGAGGAGGTGGTCTTGATATGGACACAGTAACCGGACCT
CTGGCTACGGGGCATCCTTTCCTGTACGATATTTGTCCGCGTGATTCCAA
CAAGACCGTTGTTCACATGGGAGATAAGTCAACTGTAGCTGTAGTCCCGA
TCAGCTCCTTTGACCGCGAGCACAAGGGCTTGACTACAAAAGCAGGCTCC
TTTGGTGCTCCTCAGTGGCACCCAAACGCTGGTAAAGACGGGAGGGAGGT
TGTGTTGTTTGTTGAACGAGACAATGTTCTGAAATCAGATTCTTTTCTTG
GTCAAGGCGCCGCGAAAAACAAGGCTAATCCAGAGCTCATGCAGAAGGGG
CAACAGAAAAATGGTGGCAAAAGCGACAGCGACAAGGCCGAGGCATTCGA
AAAGTTTCTCGTAAGCAGTACATCGCTACTCGAGAGCGTTCTGCGCAAGG
GGGCAGAGTCACTCGGTTTGGCGCCGAAAAGCGACAAGAGCGAATCTAAA
GTGGCAGAAAATGAGCCCACTGTGGATCCGACTGCGCAGGAGGCGGAAGA
TGACGGCGAGTTGAAGGAAAAAATCCGCCGTCTGCTGCCCAAGAAGCCTC
CGGCAATTCGAGATCAGCACTGGAGTGAGCCCTATGTCACAGAGAGCATG
GCCAATCGCCTCGTGATGTGTGACGTGGAGAACCCTGAACTAAGGCGAGT
CATTGCTCGCTTCACGGGCATCATGGCGTTCAAGCTATCACCAAATGGGA
AGTACCTCGCCACACTTGTCACCAATCCTACCACAGGGGCAGACGAGCTC
ACCATCTGCACCGGTGATTTCTCAGCCGATACCGTTGTAGAGCCACGCCC
GCAGGGTCATATGAGAAAGGGCCAAAGCGAGGCGGACATCATTCTCAGCA
CTCCGTACACCAGAGTTCTTGCGTTCTTCTGGAGCCCTGATTCCTCCAAG
ATGTTGTTTCTCACATCGCTGCGCGGCAGTCGAGTCGGAGCGGCACAGTG
GGCAACGTTCGACCTGGAGTCGAACAAGGTTGTGCGGTACGAGAAGTTCA
TCATGTCTGGCATCTACATGCATTGCCTGAATTTCTTTGACCAGTTTGCC
ACGTCCATGACGCCATGGTCTCCGGACTCGGACGCCTTTTGCTACCCCGG
CAGGGCCCTGACACCTGCGGAAATTGAAAAGGATCAAAACCCGGCGCCCA
CGGCGGCACCAGCCCTTTCAGCGCTGTTCATGCAGAGGGACAACTCTGCG
GAAGGAAAGCGGTTTAACGCGAGGGTTCAAAATGTGCCGGTGACGACGAG
CTCCATGGGGAAGGTTGAAGCGGAGGCGCCCGTCACGATTGTGGAAAACG
TGGAGTACGCGTGCTGGAGCCCGTGCTGA

protein sequence of Gvermi12313.t1

>Gvermi12313.t1 ID=Gvermi12313.t1|Name=Gvermi12313.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=polypeptide|length=693bp
MTSRREVRESVGVPTQERLLRLERALAAAILQERYSDAASLRDALQAART
SDPLLAKRAELQAAVDSERFLEAARLRDELATLTERFSKRDAGRRVDRII
VLRGRAEPDKALRAATVSRDGAVQLGLVPEISEKNAPPRVYLQPTWSPSG
DFVAVTEISFSIDLSRLGRGVAIADSSARIIVMNAFDGSVVRSVPFTKPP
FFYFWSPDGRRLTLLSNDQGSTATTVALSAIQVVAPPGGGGLDMDTVTGP
LATGHPFLYDICPRDSNKTVVHMGDKSTVAVVPISSFDREHKGLTTKAGS
FGAPQWHPNAGKDGREVVLFVERDNVLKSDSFLGQGAAKNKANPELMQKG
QQKNGGKSDSDKAEAFEKFLVSSTSLLESVLRKGAESLGLAPKSDKSESK
VAENEPTVDPTAQEAEDDGELKEKIRRLLPKKPPAIRDQHWSEPYVTESM
ANRLVMCDVENPELRRVIARFTGIMAFKLSPNGKYLATLVTNPTTGADEL
TICTGDFSADTVVEPRPQGHMRKGQSEADIILSTPYTRVLAFFWSPDSSK
MLFLTSLRGSRVGAAQWATFDLESNKVVRYEKFIMSGIYMHCLNFFDQFA
TSMTPWSPDSDAFCYPGRALTPAEIEKDQNPAPTAAPALSALFMQRDNSA
EGKRFNARVQNVPVTTSSMGKVEAEAPVTIVENVEYACWSPC*

mRNA from alignment at ScGOVlb_3404:4170738..4172816+

Legend: start_codonpolypeptideCDSexonstop_codon

Hold the cursor over a type above to highlight its positions in the sequence below.

>Gvermi12313.t1 ID=Gvermi12313.t1|Name=Gvermi12313.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=2079bp|location=Sequence derived from alignment at ScGOVlb_3404:4170738..4172816+ (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
ATGACCTCGCGTCGTGAGGTTCGCGAATCCGTCGGCGTCCCCACACAGGA
GCGCCTCTTACGACTCGAGCGCGCTCTCGCTGCCGCCATTCTACAGGAGC
GTTATTCAGATGCTGCAAGCTTGCGCGATGCTCTGCAGGCTGCCCGCACA
TCCGATCCCTTGCTTGCCAAGCGCGCCGAGCTGCAAGCCGCTGTCGACAG
CGAGCGTTTCCTCGAAGCAGCCCGTCTGCGCGACGAGCTCGCCACCCTAA
CCGAACGCTTTTCGAAGCGTGATGCCGGAAGACGTGTCGACCGTATCATT
GTTCTTCGAGGTCGTGCCGAGCCAGACAAGGCGCTGCGCGCCGCAACTGT
GTCAAGAGATGGTGCCGTACAGCTAGGACTCGTCCCCGAAATCTCCGAAA
AGAACGCACCGCCCAGGGTGTACCTGCAACCAACATGGTCACCGAGCGGC
GATTTTGTTGCCGTCACGGAGATATCCTTCAGCATTGACTTGAGCAGACT
GGGACGAGGCGTCGCTATCGCAGATAGTTCGGCCAGAATTATTGTCATGA
ATGCCTTTGATGGAAGTGTTGTTCGCTCCGTCCCGTTCACAAAGCCACCA
TTCTTTTACTTTTGGAGTCCAGACGGTCGCCGCCTCACGCTTTTATCGAA
TGATCAGGGATCGACGGCGACTACGGTTGCTTTGTCTGCAATTCAGGTGG
TGGCGCCGCCAGGAGGAGGTGGTCTTGATATGGACACAGTAACCGGACCT
CTGGCTACGGGGCATCCTTTCCTGTACGATATTTGTCCGCGTGATTCCAA
CAAGACCGTTGTTCACATGGGAGATAAGTCAACTGTAGCTGTAGTCCCGA
TCAGCTCCTTTGACCGCGAGCACAAGGGCTTGACTACAAAAGCAGGCTCC
TTTGGTGCTCCTCAGTGGCACCCAAACGCTGGTAAAGACGGGAGGGAGGT
TGTGTTGTTTGTTGAACGAGACAATGTTCTGAAATCAGATTCTTTTCTTG
GTCAAGGCGCCGCGAAAAACAAGGCTAATCCAGAGCTCATGCAGAAGGGG
CAACAGAAAAATGGTGGCAAAAGCGACAGCGACAAGGCCGAGGCATTCGA
AAAGTTTCTCGTAAGCAGTACATCGCTACTCGAGAGCGTTCTGCGCAAGG
GGGCAGAGTCACTCGGTTTGGCGCCGAAAAGCGACAAGAGCGAATCTAAA
GTGGCAGAAAATGAGCCCACTGTGGATCCGACTGCGCAGGAGGCGGAAGA
TGACGGCGAGTTGAAGGAAAAAATCCGCCGTCTGCTGCCCAAGAAGCCTC
CGGCAATTCGAGATCAGCACTGGAGTGAGCCCTATGTCACAGAGAGCATG
GCCAATCGCCTCGTGATGTGTGACGTGGAGAACCCTGAACTAAGGCGAGT
CATTGCTCGCTTCACGGGCATCATGGCGTTCAAGCTATCACCAAATGGGA
AGTACCTCGCCACACTTGTCACCAATCCTACCACAGGGGCAGACGAGCTC
ACCATCTGCACCGGTGATTTCTCAGCCGATACCGTTGTAGAGCCACGCCC
GCAGGGTCATATGAGAAAGGGCCAAAGCGAGGCGGACATCATTCTCAGCA
CTCCGTACACCAGAGTTCTTGCGTTCTTCTGGAGCCCTGATTCCTCCAAG
ATGTTGTTTCTCACATCGCTGCGCGGCAGTCGAGTCGGAGCGGCACAGTG
GGCAACGTTCGACCTGGAGTCGAACAAGGTTGTGCGGTACGAGAAGTTCA
TCATGTCTGGCATCTACATGCATTGCCTGAATTTCTTTGACCAGTTTGCC
ACGTCCATGACGCCATGGTCTCCGGACTCGGACGCCTTTTGCTACCCCGG
CAGGGCCCTGACACCTGCGGAAATTGAAAAGGATCAAAACCCGGCGCCCA
CGGCGGCACCAGCCCTTTCAGCGCTGTTCATGCAGAGGGACAACTCTGCG
GAAGGAAAGCGGTTTAACGCGAGGGTTCAAAATGTGCCGGTGACGACGAG
CTCCATGGGGAAGGTTGAAGCGGAGGCGCCCGTCACGATTGTGGAAAACG
TGGAGTACGCGTGCTGGAGCCCGTGCTGA

Coding sequence (CDS) from alignment at ScGOVlb_3404:4170738..4172816+

>Gvermi12313.t1 ID=Gvermi12313.t1|Name=Gvermi12313.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=CDS|length=2079bp|location=Sequence derived from alignment at ScGOVlb_3404:4170738..4172816+ (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
ATGACCTCGCGTCGTGAGGTTCGCGAATCCGTCGGCGTCCCCACACAGGA
GCGCCTCTTACGACTCGAGCGCGCTCTCGCTGCCGCCATTCTACAGGAGC
GTTATTCAGATGCTGCAAGCTTGCGCGATGCTCTGCAGGCTGCCCGCACA
TCCGATCCCTTGCTTGCCAAGCGCGCCGAGCTGCAAGCCGCTGTCGACAG
CGAGCGTTTCCTCGAAGCAGCCCGTCTGCGCGACGAGCTCGCCACCCTAA
CCGAACGCTTTTCGAAGCGTGATGCCGGAAGACGTGTCGACCGTATCATT
GTTCTTCGAGGTCGTGCCGAGCCAGACAAGGCGCTGCGCGCCGCAACTGT
GTCAAGAGATGGTGCCGTACAGCTAGGACTCGTCCCCGAAATCTCCGAAA
AGAACGCACCGCCCAGGGTGTACCTGCAACCAACATGGTCACCGAGCGGC
GATTTTGTTGCCGTCACGGAGATATCCTTCAGCATTGACTTGAGCAGACT
GGGACGAGGCGTCGCTATCGCAGATAGTTCGGCCAGAATTATTGTCATGA
ATGCCTTTGATGGAAGTGTTGTTCGCTCCGTCCCGTTCACAAAGCCACCA
TTCTTTTACTTTTGGAGTCCAGACGGTCGCCGCCTCACGCTTTTATCGAA
TGATCAGGGATCGACGGCGACTACGGTTGCTTTGTCTGCAATTCAGGTGG
TGGCGCCGCCAGGAGGAGGTGGTCTTGATATGGACACAGTAACCGGACCT
CTGGCTACGGGGCATCCTTTCCTGTACGATATTTGTCCGCGTGATTCCAA
CAAGACCGTTGTTCACATGGGAGATAAGTCAACTGTAGCTGTAGTCCCGA
TCAGCTCCTTTGACCGCGAGCACAAGGGCTTGACTACAAAAGCAGGCTCC
TTTGGTGCTCCTCAGTGGCACCCAAACGCTGGTAAAGACGGGAGGGAGGT
TGTGTTGTTTGTTGAACGAGACAATGTTCTGAAATCAGATTCTTTTCTTG
GTCAAGGCGCCGCGAAAAACAAGGCTAATCCAGAGCTCATGCAGAAGGGG
CAACAGAAAAATGGTGGCAAAAGCGACAGCGACAAGGCCGAGGCATTCGA
AAAGTTTCTCGTAAGCAGTACATCGCTACTCGAGAGCGTTCTGCGCAAGG
GGGCAGAGTCACTCGGTTTGGCGCCGAAAAGCGACAAGAGCGAATCTAAA
GTGGCAGAAAATGAGCCCACTGTGGATCCGACTGCGCAGGAGGCGGAAGA
TGACGGCGAGTTGAAGGAAAAAATCCGCCGTCTGCTGCCCAAGAAGCCTC
CGGCAATTCGAGATCAGCACTGGAGTGAGCCCTATGTCACAGAGAGCATG
GCCAATCGCCTCGTGATGTGTGACGTGGAGAACCCTGAACTAAGGCGAGT
CATTGCTCGCTTCACGGGCATCATGGCGTTCAAGCTATCACCAAATGGGA
AGTACCTCGCCACACTTGTCACCAATCCTACCACAGGGGCAGACGAGCTC
ACCATCTGCACCGGTGATTTCTCAGCCGATACCGTTGTAGAGCCACGCCC
GCAGGGTCATATGAGAAAGGGCCAAAGCGAGGCGGACATCATTCTCAGCA
CTCCGTACACCAGAGTTCTTGCGTTCTTCTGGAGCCCTGATTCCTCCAAG
ATGTTGTTTCTCACATCGCTGCGCGGCAGTCGAGTCGGAGCGGCACAGTG
GGCAACGTTCGACCTGGAGTCGAACAAGGTTGTGCGGTACGAGAAGTTCA
TCATGTCTGGCATCTACATGCATTGCCTGAATTTCTTTGACCAGTTTGCC
ACGTCCATGACGCCATGGTCTCCGGACTCGGACGCCTTTTGCTACCCCGG
CAGGGCCCTGACACCTGCGGAAATTGAAAAGGATCAAAACCCGGCGCCCA
CGGCGGCACCAGCCCTTTCAGCGCTGTTCATGCAGAGGGACAACTCTGCG
GAAGGAAAGCGGTTTAACGCGAGGGTTCAAAATGTGCCGGTGACGACGAG
CTCCATGGGGAAGGTTGAAGCGGAGGCGCCCGTCACGATTGTGGAAAACG
TGGAGTACGCGTGCTGGAGCCCGTGCTGA