Gvermi12432.t1 (mRNA) Gracilaria vermiculophylla HapMaleFtJ_2017 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGvermi12432.t1
Unique NameGvermi12432.t1
TypemRNA
OrganismGracilaria vermiculophylla HapMaleFtJ_2017 male (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
Sequence length176
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
ScGOVlb_3404contigScGOVlb_3404:4731284..4731811 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria vermiculophylla HapMaleFtJ_2017 male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog112098.XP_008615851.1
Preferred namePUS10
Max annot lvl2759|Eukaryota
KEGG koko:K07583
GOsGO:0001522,GO:0003674,GO:0003824,GO:0006139,GO:0006396,GO:0006399,GO:0006400,GO:0006725,GO:0006807,GO:0008033,GO:0008150,GO:0008152,GO:0009451,GO:0009982,GO:0009987,GO:0010467,GO:0016070,GO:0016853,GO:0016866,GO:0031119,GO:0034470,GO:0034641,GO:0034660,GO:0043170,GO:0043412,GO:0044237,GO:0044238,GO:0046483,GO:0071704,GO:0090304,GO:1901360
Evalue3.93e-38
EggNOG OGsCOG1258@1|root,KOG2364@2759|Eukaryota
EC5.4.99.25
Descriptionpseudouridine synthase activity
COG categoryJ
BRITEko00000,ko01000,ko03016
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Gvermi12432Gvermi12432Gracilaria vermiculophylla HapMaleFtJ_2017 malegeneScGOVlb_3404 4731284..4731811 -


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi12432.t1.stop1Gvermi12432.t1.stop1Gracilaria vermiculophylla HapMaleFtJ_2017 malestop_codonScGOVlb_3404 4731284..4731286 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi12432.t1.CDS1Gvermi12432.t1.CDS1Gracilaria vermiculophylla HapMaleFtJ_2017 maleCDSScGOVlb_3404 4731284..4731811 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi12432.t1.exon1Gvermi12432.t1.exon1Gracilaria vermiculophylla HapMaleFtJ_2017 maleexonScGOVlb_3404 4731284..4731811 -


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi12432.t1.start1Gvermi12432.t1.start1Gracilaria vermiculophylla HapMaleFtJ_2017 malestart_codonScGOVlb_3404 4731809..4731811 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi12432.t1Gvermi12432.t1Gracilaria vermiculophylla HapMaleFtJ_2017 malepolypeptideScGOVlb_3404 4731284..4731811 -


Sequences
The following sequences are available for this feature:

mRNA sequence

>Gvermi12432.t1 ID=Gvermi12432.t1|Name=Gvermi12432.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=176bp
MLGGGRPFVLELQGAAIVPSLVDAPMLQRIAAALHADVVRVHGLAVVPTS
YFAEMRQYEAEKRKHYRCVIYTEGVLDERKLQLLNMQHVSIAQRTPLRVL
HRRTQAVRHKTIFSTTVERVMNEHFVLLDVVAQAGTYIKEFVHGDHGRTH
PSVASLLQCFADIVQLDVTEISQKS*
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spliced messenger RNA

>Gvermi12432.t1 ID=Gvermi12432.t1|Name=Gvermi12432.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=528bp|location=Sequence derived from alignment at ScGOVlb_3404:4731284..4731811- (Gracilaria vermiculophylla HapMaleFtJ_2017 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGCTGGGCGGCGGCCGCCCGTTCGTGCTCGAGCTGCAGGGCGCCGCCAT
CGTGCCGTCGCTCGTGGACGCCCCCATGCTGCAGCGCATTGCCGCCGCGT
TGCACGCCGACGTCGTGCGCGTGCACGGCCTCGCCGTCGTGCCCACGTCG
TACTTTGCCGAGATGAGGCAGTATGAGGCCGAGAAGCGAAAGCACTATCG
ATGCGTCATTTACACAGAGGGCGTGCTGGATGAGCGTAAACTGCAACTGC
TCAACATGCAGCACGTGAGCATTGCGCAGCGCACGCCGTTGCGCGTGTTG
CACCGCCGCACGCAGGCCGTGCGCCACAAGACCATCTTCAGCACCACCGT
GGAGCGCGTGATGAACGAGCACTTTGTGCTGCTGGACGTCGTTGCGCAAG
CCGGCACGTACATCAAGGAATTCGTGCACGGTGACCACGGGCGGACGCAT
CCCAGCGTTGCCTCGCTGTTGCAGTGCTTTGCGGACATTGTTCAATTGGA
CGTGACGGAGATCAGCCAGAAAAGCTAG
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protein sequence of Gvermi12432.t1

>Gvermi12432.t1 ID=Gvermi12432.t1|Name=Gvermi12432.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=polypeptide|length=176bp
MLGGGRPFVLELQGAAIVPSLVDAPMLQRIAAALHADVVRVHGLAVVPTS
YFAEMRQYEAEKRKHYRCVIYTEGVLDERKLQLLNMQHVSIAQRTPLRVL
HRRTQAVRHKTIFSTTVERVMNEHFVLLDVVAQAGTYIKEFVHGDHGRTH
PSVASLLQCFADIVQLDVTEISQKS*
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mRNA from alignment at ScGOVlb_3404:4731284..4731811-

Legend: polypeptideCDSexonstart_codonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Gvermi12432.t1 ID=Gvermi12432.t1|Name=Gvermi12432.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=528bp|location=Sequence derived from alignment at ScGOVlb_3404:4731284..4731811- (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
ATGCTGGGCGGCGGCCGCCCGTTCGTGCTCGAGCTGCAGGGCGCCGCCAT
CGTGCCGTCGCTCGTGGACGCCCCCATGCTGCAGCGCATTGCCGCCGCGT
TGCACGCCGACGTCGTGCGCGTGCACGGCCTCGCCGTCGTGCCCACGTCG
TACTTTGCCGAGATGAGGCAGTATGAGGCCGAGAAGCGAAAGCACTATCG
ATGCGTCATTTACACAGAGGGCGTGCTGGATGAGCGTAAACTGCAACTGC
TCAACATGCAGCACGTGAGCATTGCGCAGCGCACGCCGTTGCGCGTGTTG
CACCGCCGCACGCAGGCCGTGCGCCACAAGACCATCTTCAGCACCACCGT
GGAGCGCGTGATGAACGAGCACTTTGTGCTGCTGGACGTCGTTGCGCAAG
CCGGCACGTACATCAAGGAATTCGTGCACGGTGACCACGGGCGGACGCAT
CCCAGCGTTGCCTCGCTGTTGCAGTGCTTTGCGGACATTGTTCAATTGGA
CGTGACGGAGATCAGCCAGAAAAGCTAG
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Coding sequence (CDS) from alignment at ScGOVlb_3404:4731284..4731811-

>Gvermi12432.t1 ID=Gvermi12432.t1|Name=Gvermi12432.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=CDS|length=528bp|location=Sequence derived from alignment at ScGOVlb_3404:4731284..4731811- (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
ATGCTGGGCGGCGGCCGCCCGTTCGTGCTCGAGCTGCAGGGCGCCGCCAT
CGTGCCGTCGCTCGTGGACGCCCCCATGCTGCAGCGCATTGCCGCCGCGT
TGCACGCCGACGTCGTGCGCGTGCACGGCCTCGCCGTCGTGCCCACGTCG
TACTTTGCCGAGATGAGGCAGTATGAGGCCGAGAAGCGAAAGCACTATCG
ATGCGTCATTTACACAGAGGGCGTGCTGGATGAGCGTAAACTGCAACTGC
TCAACATGCAGCACGTGAGCATTGCGCAGCGCACGCCGTTGCGCGTGTTG
CACCGCCGCACGCAGGCCGTGCGCCACAAGACCATCTTCAGCACCACCGT
GGAGCGCGTGATGAACGAGCACTTTGTGCTGCTGGACGTCGTTGCGCAAG
CCGGCACGTACATCAAGGAATTCGTGCACGGTGACCACGGGCGGACGCAT
CCCAGCGTTGCCTCGCTGTTGCAGTGCTTTGCGGACATTGTTCAATTGGA
CGTGACGGAGATCAGCCAGAAAAGCTAG
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