Gvermi12153.t1 (mRNA) Gracilaria vermiculophylla HapMaleFtJ_2017 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGvermi12153.t1
Unique NameGvermi12153.t1
TypemRNA
OrganismGracilaria vermiculophylla HapMaleFtJ_2017 male (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
Sequence length331
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
ScGOVlb_3404contigScGOVlb_3404:3591545..3592537 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria vermiculophylla HapMaleFtJ_2017 male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog126957.SMAR005099-PA
Preferred nameWDR82
PFAMsCofilin_ADF,WD40
Max annot lvl33208|Metazoa
KEGG koko:K08870,ko:K14962
KEGG Pathwayko03015,map03015
GOsGO:0000785,GO:0003674,GO:0003682,GO:0005488,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005654,GO:0005694,GO:0005730,GO:0006325,GO:0006464,GO:0006479,GO:0006807,GO:0006996,GO:0008150,GO:0008152,GO:0008213,GO:0008287,GO:0009987,GO:0016043,GO:0016569,GO:0016570,GO:0016571,GO:0018022,GO:0018023,GO:0018193,GO:0018205,GO:0019538,GO:0031974,GO:0031981,GO:0032259,GO:0032991,GO:0034708,GO:0034968,GO:0035097,GO:0036211,GO:0043170,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043233,GO:0043412,GO:0043414,GO:0044237,GO:0044238,GO:0044260,GO:0044267,GO:0044422,GO:0044424,GO:0044427,GO:0044428,GO:0044446,GO:0044451,GO:0044464,GO:0048188,GO:0051276,GO:0051568,GO:0070013,GO:0071704,GO:0071840,GO:0072357,GO:0080182,GO:1901564,GO:1902494,GO:1903293,GO:1990234
Evalue6.91e-75
EggNOG OGsKOG1446@1|root,KOG1446@2759|Eukaryota,38EVS@33154|Opisthokonta,3BAWD@33208|Metazoa,3CXDJ@33213|Bilateria,41UYD@6656|Arthropoda
DescriptionWD repeat-containing protein
COG categoryABO
BRITEko00000,ko00001,ko03019,ko03036
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Gvermi12153Gvermi12153Gracilaria vermiculophylla HapMaleFtJ_2017 malegeneScGOVlb_3404 3591545..3592537 -


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi12153.t1.stop1Gvermi12153.t1.stop1Gracilaria vermiculophylla HapMaleFtJ_2017 malestop_codonScGOVlb_3404 3591545..3591547 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi12153.t1.CDS1Gvermi12153.t1.CDS1Gracilaria vermiculophylla HapMaleFtJ_2017 maleCDSScGOVlb_3404 3591545..3592537 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi12153.t1.exon1Gvermi12153.t1.exon1Gracilaria vermiculophylla HapMaleFtJ_2017 maleexonScGOVlb_3404 3591545..3592537 -


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi12153.t1.start1Gvermi12153.t1.start1Gracilaria vermiculophylla HapMaleFtJ_2017 malestart_codonScGOVlb_3404 3592535..3592537 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi12153.t1Gvermi12153.t1Gracilaria vermiculophylla HapMaleFtJ_2017 malepolypeptideScGOVlb_3404 3591545..3592537 -


Sequences
The following sequences are available for this feature:

mRNA sequence

>Gvermi12153.t1 ID=Gvermi12153.t1|Name=Gvermi12153.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=331bp
MESAREELTDQMVKSFQVARVHREHHRPVTCLDTSQNGLITVSSSADNNI
VVYDTLEGSVSAKIPVRKYGAGVVRFVQDTNPPTVVTASTAEDNKIRALD
IESHRYVRYYDGHASQVVSIAASPASPDFITCSEDSCVMLWDCRSANALG
RVKTDGTPVVAYDPKGLIFGVAYRAANSKTLVKLYDARNYKDGPFLEFPL
NNPSDSLPTCLKFSSDGEYFLLVDTDSEAKVSIYDAYKGAVYRTLTGHSN
ARGVPLEASFSPNSAFISSGSDDGSVYVWDLQADVLLNVPSIHATASACT
IWNPVYALLITACQNVAFWLPSEHYYANDY*
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spliced messenger RNA

>Gvermi12153.t1 ID=Gvermi12153.t1|Name=Gvermi12153.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=993bp|location=Sequence derived from alignment at ScGOVlb_3404:3591545..3592537- (Gracilaria vermiculophylla HapMaleFtJ_2017 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGGAGTCTGCCCGCGAGGAGTTGACCGACCAAATGGTCAAATCCTTTCA
GGTTGCCCGCGTTCACCGTGAGCACCACCGACCAGTCACGTGCCTTGATA
CCTCCCAGAATGGACTCATCACGGTTTCATCAAGCGCTGACAACAACATC
GTCGTGTACGACACCCTCGAGGGGTCCGTTTCGGCCAAAATTCCCGTTCG
CAAGTACGGCGCCGGTGTGGTCCGATTTGTGCAGGATACAAACCCACCGA
CCGTTGTCACCGCATCAACGGCCGAAGACAACAAGATCAGAGCCCTTGAC
ATCGAGTCTCATCGATACGTTCGATACTACGACGGCCACGCCTCGCAGGT
CGTGTCCATTGCCGCCTCTCCAGCCAGTCCGGATTTCATCACGTGTTCCG
AAGATTCCTGTGTCATGCTGTGGGACTGCCGTTCCGCCAATGCCCTTGGG
AGGGTCAAGACCGACGGCACTCCTGTTGTTGCTTACGACCCAAAAGGGCT
CATTTTCGGCGTGGCGTACAGGGCTGCAAATTCAAAGACTCTGGTCAAAC
TGTACGATGCTCGAAATTACAAAGACGGGCCGTTTCTCGAATTCCCGCTC
AACAACCCTTCCGATTCGCTTCCCACATGTCTCAAGTTTTCTTCTGATGG
CGAGTACTTTTTACTCGTCGACACAGACAGTGAAGCGAAGGTTTCCATCT
ATGATGCGTACAAAGGCGCCGTCTATCGCACACTCACCGGCCACAGCAAT
GCCAGAGGTGTTCCGCTGGAAGCGTCTTTTAGCCCCAACTCAGCCTTCAT
TTCCAGTGGCTCCGACGACGGCTCTGTCTATGTTTGGGATTTGCAAGCCG
ATGTACTGCTCAATGTACCGAGTATCCACGCCACGGCGAGTGCGTGCACA
ATATGGAACCCGGTCTACGCGCTGCTCATCACGGCATGCCAGAACGTTGC
ATTCTGGCTCCCCTCTGAACACTATTATGCAAACGATTACTAA
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protein sequence of Gvermi12153.t1

>Gvermi12153.t1 ID=Gvermi12153.t1|Name=Gvermi12153.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=polypeptide|length=331bp
MESAREELTDQMVKSFQVARVHREHHRPVTCLDTSQNGLITVSSSADNNI
VVYDTLEGSVSAKIPVRKYGAGVVRFVQDTNPPTVVTASTAEDNKIRALD
IESHRYVRYYDGHASQVVSIAASPASPDFITCSEDSCVMLWDCRSANALG
RVKTDGTPVVAYDPKGLIFGVAYRAANSKTLVKLYDARNYKDGPFLEFPL
NNPSDSLPTCLKFSSDGEYFLLVDTDSEAKVSIYDAYKGAVYRTLTGHSN
ARGVPLEASFSPNSAFISSGSDDGSVYVWDLQADVLLNVPSIHATASACT
IWNPVYALLITACQNVAFWLPSEHYYANDY*
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mRNA from alignment at ScGOVlb_3404:3591545..3592537-

Legend: polypeptideCDSexonstart_codonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Gvermi12153.t1 ID=Gvermi12153.t1|Name=Gvermi12153.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=993bp|location=Sequence derived from alignment at ScGOVlb_3404:3591545..3592537- (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
ATGGAGTCTGCCCGCGAGGAGTTGACCGACCAAATGGTCAAATCCTTTCA
GGTTGCCCGCGTTCACCGTGAGCACCACCGACCAGTCACGTGCCTTGATA
CCTCCCAGAATGGACTCATCACGGTTTCATCAAGCGCTGACAACAACATC
GTCGTGTACGACACCCTCGAGGGGTCCGTTTCGGCCAAAATTCCCGTTCG
CAAGTACGGCGCCGGTGTGGTCCGATTTGTGCAGGATACAAACCCACCGA
CCGTTGTCACCGCATCAACGGCCGAAGACAACAAGATCAGAGCCCTTGAC
ATCGAGTCTCATCGATACGTTCGATACTACGACGGCCACGCCTCGCAGGT
CGTGTCCATTGCCGCCTCTCCAGCCAGTCCGGATTTCATCACGTGTTCCG
AAGATTCCTGTGTCATGCTGTGGGACTGCCGTTCCGCCAATGCCCTTGGG
AGGGTCAAGACCGACGGCACTCCTGTTGTTGCTTACGACCCAAAAGGGCT
CATTTTCGGCGTGGCGTACAGGGCTGCAAATTCAAAGACTCTGGTCAAAC
TGTACGATGCTCGAAATTACAAAGACGGGCCGTTTCTCGAATTCCCGCTC
AACAACCCTTCCGATTCGCTTCCCACATGTCTCAAGTTTTCTTCTGATGG
CGAGTACTTTTTACTCGTCGACACAGACAGTGAAGCGAAGGTTTCCATCT
ATGATGCGTACAAAGGCGCCGTCTATCGCACACTCACCGGCCACAGCAAT
GCCAGAGGTGTTCCGCTGGAAGCGTCTTTTAGCCCCAACTCAGCCTTCAT
TTCCAGTGGCTCCGACGACGGCTCTGTCTATGTTTGGGATTTGCAAGCCG
ATGTACTGCTCAATGTACCGAGTATCCACGCCACGGCGAGTGCGTGCACA
ATATGGAACCCGGTCTACGCGCTGCTCATCACGGCATGCCAGAACGTTGC
ATTCTGGCTCCCCTCTGAACACTATTATGCAAACGATTACTAA
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Coding sequence (CDS) from alignment at ScGOVlb_3404:3591545..3592537-

>Gvermi12153.t1 ID=Gvermi12153.t1|Name=Gvermi12153.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=CDS|length=993bp|location=Sequence derived from alignment at ScGOVlb_3404:3591545..3592537- (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
ATGGAGTCTGCCCGCGAGGAGTTGACCGACCAAATGGTCAAATCCTTTCA
GGTTGCCCGCGTTCACCGTGAGCACCACCGACCAGTCACGTGCCTTGATA
CCTCCCAGAATGGACTCATCACGGTTTCATCAAGCGCTGACAACAACATC
GTCGTGTACGACACCCTCGAGGGGTCCGTTTCGGCCAAAATTCCCGTTCG
CAAGTACGGCGCCGGTGTGGTCCGATTTGTGCAGGATACAAACCCACCGA
CCGTTGTCACCGCATCAACGGCCGAAGACAACAAGATCAGAGCCCTTGAC
ATCGAGTCTCATCGATACGTTCGATACTACGACGGCCACGCCTCGCAGGT
CGTGTCCATTGCCGCCTCTCCAGCCAGTCCGGATTTCATCACGTGTTCCG
AAGATTCCTGTGTCATGCTGTGGGACTGCCGTTCCGCCAATGCCCTTGGG
AGGGTCAAGACCGACGGCACTCCTGTTGTTGCTTACGACCCAAAAGGGCT
CATTTTCGGCGTGGCGTACAGGGCTGCAAATTCAAAGACTCTGGTCAAAC
TGTACGATGCTCGAAATTACAAAGACGGGCCGTTTCTCGAATTCCCGCTC
AACAACCCTTCCGATTCGCTTCCCACATGTCTCAAGTTTTCTTCTGATGG
CGAGTACTTTTTACTCGTCGACACAGACAGTGAAGCGAAGGTTTCCATCT
ATGATGCGTACAAAGGCGCCGTCTATCGCACACTCACCGGCCACAGCAAT
GCCAGAGGTGTTCCGCTGGAAGCGTCTTTTAGCCCCAACTCAGCCTTCAT
TTCCAGTGGCTCCGACGACGGCTCTGTCTATGTTTGGGATTTGCAAGCCG
ATGTACTGCTCAATGTACCGAGTATCCACGCCACGGCGAGTGCGTGCACA
ATATGGAACCCGGTCTACGCGCTGCTCATCACGGCATGCCAGAACGTTGC
ATTCTGGCTCCCCTCTGAACACTATTATGCAAACGATTACTAA
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