Gvermi12513.t1 (mRNA) Gracilaria vermiculophylla HapMaleFtJ_2017 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGvermi12513.t1
Unique NameGvermi12513.t1
TypemRNA
OrganismGracilaria vermiculophylla HapMaleFtJ_2017 male (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
Sequence length226
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
ScGOVlb_3404contigScGOVlb_3404:5988111..5988788 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria vermiculophylla HapMaleFtJ_2017 male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog1223523.H340_05711
PFAMsDNase_NucA_NucB,Endonuclea_NS_2
Max annot lvl201174|Actinobacteria
Evalue8.74e-08
EggNOG OGs2F268@1|root,33V4J@2|Bacteria,2IF8D@201174|Actinobacteria
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Gvermi12513Gvermi12513Gracilaria vermiculophylla HapMaleFtJ_2017 malegeneScGOVlb_3404 5988111..5988788 -


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi12513.t1.stop1Gvermi12513.t1.stop1Gracilaria vermiculophylla HapMaleFtJ_2017 malestop_codonScGOVlb_3404 5988111..5988113 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi12513.t1.CDS1Gvermi12513.t1.CDS1Gracilaria vermiculophylla HapMaleFtJ_2017 maleCDSScGOVlb_3404 5988111..5988788 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi12513.t1.exon1Gvermi12513.t1.exon1Gracilaria vermiculophylla HapMaleFtJ_2017 maleexonScGOVlb_3404 5988111..5988788 -


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi12513.t1.start1Gvermi12513.t1.start1Gracilaria vermiculophylla HapMaleFtJ_2017 malestart_codonScGOVlb_3404 5988786..5988788 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi12513.t1Gvermi12513.t1Gracilaria vermiculophylla HapMaleFtJ_2017 malepolypeptideScGOVlb_3404 5988111..5988788 -


Sequences
The following sequences are available for this feature:

mRNA sequence

>Gvermi12513.t1 ID=Gvermi12513.t1|Name=Gvermi12513.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=226bp
MMLRFLFLILFGLSISDAYSIHNETISSPVGADFLPSIVHQSALDRWKDS
FKNCGGSLIIRGNSGIEPATRITATIKPACRKNGSRPFSRAIYGWDDFKR
FVYKKKTGRTVPKGQMVPPLRPIPWARCHIIANQLGGKGNVYANLFPCWQ
TQFNTPVMSNCENVVASELKAGNTVIYDTTLEYKSSNPWPTSIIIEAEKI
NKNRKRSKLYKVRIENTELAKLTNI*
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spliced messenger RNA

>Gvermi12513.t1 ID=Gvermi12513.t1|Name=Gvermi12513.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=678bp|location=Sequence derived from alignment at ScGOVlb_3404:5988111..5988788- (Gracilaria vermiculophylla HapMaleFtJ_2017 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGATGCTCCGCTTCCTCTTTTTGATTCTTTTCGGACTGAGTATTTCAGA
TGCATATTCTATCCACAACGAGACAATTTCATCACCAGTGGGTGCTGATT
TTCTTCCGTCAATCGTTCATCAATCTGCTTTAGACAGATGGAAAGATTCG
TTTAAGAATTGTGGAGGTAGTTTGATCATCCGAGGAAATTCTGGCATTGA
ACCCGCAACCAGAATTACAGCCACAATAAAACCAGCTTGTCGAAAAAACG
GATCTCGCCCATTTAGCAGGGCAATCTATGGATGGGATGATTTCAAGAGA
TTTGTCTACAAAAAGAAGACGGGCCGAACTGTTCCTAAGGGCCAAATGGT
ACCGCCGCTGCGCCCTATTCCTTGGGCCCGATGCCATATCATTGCCAATC
AGCTCGGTGGAAAGGGAAACGTGTATGCCAATTTGTTCCCTTGCTGGCAA
ACACAATTTAACACACCTGTAATGTCCAACTGCGAGAATGTGGTCGCAAG
TGAATTAAAAGCCGGAAACACGGTAATTTATGACACAACTCTCGAATACA
AAAGTTCCAACCCGTGGCCAACTTCGATCATTATTGAGGCGGAAAAGATC
AACAAAAACAGGAAAAGATCCAAGCTGTACAAAGTGAGAATTGAAAACAC
TGAGCTCGCCAAACTTACAAATATTTGA
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protein sequence of Gvermi12513.t1

>Gvermi12513.t1 ID=Gvermi12513.t1|Name=Gvermi12513.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=polypeptide|length=226bp
MMLRFLFLILFGLSISDAYSIHNETISSPVGADFLPSIVHQSALDRWKDS
FKNCGGSLIIRGNSGIEPATRITATIKPACRKNGSRPFSRAIYGWDDFKR
FVYKKKTGRTVPKGQMVPPLRPIPWARCHIIANQLGGKGNVYANLFPCWQ
TQFNTPVMSNCENVVASELKAGNTVIYDTTLEYKSSNPWPTSIIIEAEKI
NKNRKRSKLYKVRIENTELAKLTNI*
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mRNA from alignment at ScGOVlb_3404:5988111..5988788-

Legend: polypeptideCDSexonstart_codonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Gvermi12513.t1 ID=Gvermi12513.t1|Name=Gvermi12513.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=678bp|location=Sequence derived from alignment at ScGOVlb_3404:5988111..5988788- (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
ATGATGCTCCGCTTCCTCTTTTTGATTCTTTTCGGACTGAGTATTTCAGA
TGCATATTCTATCCACAACGAGACAATTTCATCACCAGTGGGTGCTGATT
TTCTTCCGTCAATCGTTCATCAATCTGCTTTAGACAGATGGAAAGATTCG
TTTAAGAATTGTGGAGGTAGTTTGATCATCCGAGGAAATTCTGGCATTGA
ACCCGCAACCAGAATTACAGCCACAATAAAACCAGCTTGTCGAAAAAACG
GATCTCGCCCATTTAGCAGGGCAATCTATGGATGGGATGATTTCAAGAGA
TTTGTCTACAAAAAGAAGACGGGCCGAACTGTTCCTAAGGGCCAAATGGT
ACCGCCGCTGCGCCCTATTCCTTGGGCCCGATGCCATATCATTGCCAATC
AGCTCGGTGGAAAGGGAAACGTGTATGCCAATTTGTTCCCTTGCTGGCAA
ACACAATTTAACACACCTGTAATGTCCAACTGCGAGAATGTGGTCGCAAG
TGAATTAAAAGCCGGAAACACGGTAATTTATGACACAACTCTCGAATACA
AAAGTTCCAACCCGTGGCCAACTTCGATCATTATTGAGGCGGAAAAGATC
AACAAAAACAGGAAAAGATCCAAGCTGTACAAAGTGAGAATTGAAAACAC
TGAGCTCGCCAAACTTACAAATATTTGA
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Coding sequence (CDS) from alignment at ScGOVlb_3404:5988111..5988788-

>Gvermi12513.t1 ID=Gvermi12513.t1|Name=Gvermi12513.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=CDS|length=678bp|location=Sequence derived from alignment at ScGOVlb_3404:5988111..5988788- (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
ATGATGCTCCGCTTCCTCTTTTTGATTCTTTTCGGACTGAGTATTTCAGA
TGCATATTCTATCCACAACGAGACAATTTCATCACCAGTGGGTGCTGATT
TTCTTCCGTCAATCGTTCATCAATCTGCTTTAGACAGATGGAAAGATTCG
TTTAAGAATTGTGGAGGTAGTTTGATCATCCGAGGAAATTCTGGCATTGA
ACCCGCAACCAGAATTACAGCCACAATAAAACCAGCTTGTCGAAAAAACG
GATCTCGCCCATTTAGCAGGGCAATCTATGGATGGGATGATTTCAAGAGA
TTTGTCTACAAAAAGAAGACGGGCCGAACTGTTCCTAAGGGCCAAATGGT
ACCGCCGCTGCGCCCTATTCCTTGGGCCCGATGCCATATCATTGCCAATC
AGCTCGGTGGAAAGGGAAACGTGTATGCCAATTTGTTCCCTTGCTGGCAA
ACACAATTTAACACACCTGTAATGTCCAACTGCGAGAATGTGGTCGCAAG
TGAATTAAAAGCCGGAAACACGGTAATTTATGACACAACTCTCGAATACA
AAAGTTCCAACCCGTGGCCAACTTCGATCATTATTGAGGCGGAAAAGATC
AACAAAAACAGGAAAAGATCCAAGCTGTACAAAGTGAGAATTGAAAACAC
TGAGCTCGCCAAACTTACAAATATTTGA
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