Gvermi12190.t1 (mRNA) Gracilaria vermiculophylla HapMaleFtJ_2017 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGvermi12190.t1
Unique NameGvermi12190.t1
TypemRNA
OrganismGracilaria vermiculophylla HapMaleFtJ_2017 male (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
Sequence length491
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
ScGOVlb_3404contigScGOVlb_3404:3791857..3793329 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria vermiculophylla HapMaleFtJ_2017 male OGS1.02022-05-09
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Gvermi12190Gvermi12190Gracilaria vermiculophylla HapMaleFtJ_2017 malegeneScGOVlb_3404 3791857..3793329 -


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi12190.t1.stop1Gvermi12190.t1.stop1Gracilaria vermiculophylla HapMaleFtJ_2017 malestop_codonScGOVlb_3404 3791857..3791859 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi12190.t1.CDS1Gvermi12190.t1.CDS1Gracilaria vermiculophylla HapMaleFtJ_2017 maleCDSScGOVlb_3404 3791857..3793329 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi12190.t1.exon1Gvermi12190.t1.exon1Gracilaria vermiculophylla HapMaleFtJ_2017 maleexonScGOVlb_3404 3791857..3793329 -


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi12190.t1.start1Gvermi12190.t1.start1Gracilaria vermiculophylla HapMaleFtJ_2017 malestart_codonScGOVlb_3404 3793327..3793329 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi12190.t1Gvermi12190.t1Gracilaria vermiculophylla HapMaleFtJ_2017 malepolypeptideScGOVlb_3404 3791857..3793329 -


Sequences
The following sequences are available for this feature:

mRNA sequence

>Gvermi12190.t1 ID=Gvermi12190.t1|Name=Gvermi12190.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=491bp
MVGYLSPMNRTILTAIPTPPPDFVNISNENQSPGQYVIGQTHFIPEKSIN
SPGMLSRSLDGASEEIILGLLSIVMIMTITEVVLTILSRKRQHQDPERNQ
LALVAIKVDGLLHLSTKWMNRREHLFSPHKRQKDVILSLLALSATLFIFV
ADIGAVVLTQPHQYPSNPYSYNLRGSHPIGSNLGLGKFLRRNALERPCVT
PVFSSSNPYRNYSLSVCHLLNLKQAHKNSTESVDSVKIGSWFHKGGSDHH
LTFGNSSIEIRTRAFVYGASGGTRRLLFPILYPSYMASTHYLHQIVIYMI
LQESCNAKRSTKRCEDAVAEHWSETEPVIRVIKLWTSRRGKTKEKVQGSE
TTLRYRIHSRPWITVLKSIGPLMTAELIEEVKGPGFYSHIVSEKEQDSIP
GLIVQERRPLGILGMLFCTSLMLIALITLKRILQPVFLADRAWENFERNV
LSKLEMEDKCSSGAVTLGKEASSDEKLPAERLSHYRSEVE*
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spliced messenger RNA

>Gvermi12190.t1 ID=Gvermi12190.t1|Name=Gvermi12190.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=1473bp|location=Sequence derived from alignment at ScGOVlb_3404:3791857..3793329- (Gracilaria vermiculophylla HapMaleFtJ_2017 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGGTCGGATACTTATCACCGATGAATCGAACAATTCTCACAGCTATTCC
TACGCCCCCGCCGGATTTTGTGAACATATCTAATGAGAATCAGTCTCCAG
GACAGTATGTGATCGGTCAGACCCATTTTATACCGGAGAAATCCATCAAT
AGCCCTGGAATGCTATCACGGAGCTTAGACGGGGCTTCGGAGGAAATTAT
CTTGGGATTGCTGTCGATTGTCATGATAATGACAATCACCGAAGTAGTGC
TTACTATTCTTTCTCGAAAGAGACAACACCAAGACCCTGAAAGAAACCAA
TTGGCGCTCGTTGCCATCAAAGTGGATGGGCTGCTGCATCTAAGTACAAA
ATGGATGAATCGCCGAGAGCACTTATTTTCACCTCACAAACGACAGAAAG
ATGTCATCTTGTCGCTCTTAGCCTTATCAGCCACTTTATTTATCTTTGTT
GCAGACATTGGGGCCGTTGTCTTAACCCAACCACATCAGTACCCGAGCAA
CCCGTATAGCTATAATTTGCGTGGAAGCCATCCCATTGGAAGCAACCTTG
GGTTGGGAAAGTTTTTACGAAGAAATGCTCTGGAACGCCCCTGTGTCACG
CCCGTGTTTTCAAGTTCGAATCCATATCGAAACTATTCACTCAGTGTTTG
TCATCTTCTGAACCTCAAACAAGCTCACAAAAATTCCACGGAGAGTGTGG
ACTCTGTAAAGATTGGTTCATGGTTCCACAAAGGAGGCAGCGACCATCAC
CTAACTTTTGGTAATTCCAGTATTGAGATCAGAACTCGTGCGTTTGTTTA
CGGAGCAAGTGGTGGGACAAGGAGACTGCTATTTCCCATTCTGTATCCAA
GTTATATGGCATCCACCCATTATCTCCATCAAATAGTCATATACATGATA
TTACAGGAAAGCTGCAATGCCAAGCGCAGCACGAAACGCTGTGAAGACGC
CGTAGCTGAGCATTGGAGCGAAACTGAACCGGTGATTAGGGTGATAAAGC
TGTGGACATCCAGGCGAGGCAAGACAAAGGAAAAAGTGCAAGGTTCAGAG
ACGACTTTAAGATATAGGATACACTCAAGGCCGTGGATCACTGTCTTGAA
GAGTATAGGACCATTGATGACGGCGGAGCTTATTGAGGAAGTTAAGGGAC
CTGGTTTCTACTCTCATATAGTATCCGAGAAAGAGCAAGATAGTATTCCA
GGGCTCATTGTCCAGGAACGAAGGCCATTAGGGATACTTGGAATGCTTTT
CTGCACGAGCCTCATGCTCATTGCTTTAATCACATTGAAAAGAATACTTC
AGCCGGTTTTTCTTGCCGATCGTGCCTGGGAAAATTTTGAGAGAAACGTT
TTGAGTAAGCTTGAAATGGAAGATAAGTGTTCTTCCGGTGCTGTGACATT
GGGTAAGGAGGCAAGTTCAGATGAGAAGCTACCTGCAGAACGTCTATCTC
ACTATAGATCAGAGGTTGAGTGA
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protein sequence of Gvermi12190.t1

>Gvermi12190.t1 ID=Gvermi12190.t1|Name=Gvermi12190.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=polypeptide|length=491bp
MVGYLSPMNRTILTAIPTPPPDFVNISNENQSPGQYVIGQTHFIPEKSIN
SPGMLSRSLDGASEEIILGLLSIVMIMTITEVVLTILSRKRQHQDPERNQ
LALVAIKVDGLLHLSTKWMNRREHLFSPHKRQKDVILSLLALSATLFIFV
ADIGAVVLTQPHQYPSNPYSYNLRGSHPIGSNLGLGKFLRRNALERPCVT
PVFSSSNPYRNYSLSVCHLLNLKQAHKNSTESVDSVKIGSWFHKGGSDHH
LTFGNSSIEIRTRAFVYGASGGTRRLLFPILYPSYMASTHYLHQIVIYMI
LQESCNAKRSTKRCEDAVAEHWSETEPVIRVIKLWTSRRGKTKEKVQGSE
TTLRYRIHSRPWITVLKSIGPLMTAELIEEVKGPGFYSHIVSEKEQDSIP
GLIVQERRPLGILGMLFCTSLMLIALITLKRILQPVFLADRAWENFERNV
LSKLEMEDKCSSGAVTLGKEASSDEKLPAERLSHYRSEVE*
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mRNA from alignment at ScGOVlb_3404:3791857..3793329-

Legend: polypeptideCDSexonstart_codonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Gvermi12190.t1 ID=Gvermi12190.t1|Name=Gvermi12190.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=1473bp|location=Sequence derived from alignment at ScGOVlb_3404:3791857..3793329- (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
ATGGTCGGATACTTATCACCGATGAATCGAACAATTCTCACAGCTATTCC
TACGCCCCCGCCGGATTTTGTGAACATATCTAATGAGAATCAGTCTCCAG
GACAGTATGTGATCGGTCAGACCCATTTTATACCGGAGAAATCCATCAAT
AGCCCTGGAATGCTATCACGGAGCTTAGACGGGGCTTCGGAGGAAATTAT
CTTGGGATTGCTGTCGATTGTCATGATAATGACAATCACCGAAGTAGTGC
TTACTATTCTTTCTCGAAAGAGACAACACCAAGACCCTGAAAGAAACCAA
TTGGCGCTCGTTGCCATCAAAGTGGATGGGCTGCTGCATCTAAGTACAAA
ATGGATGAATCGCCGAGAGCACTTATTTTCACCTCACAAACGACAGAAAG
ATGTCATCTTGTCGCTCTTAGCCTTATCAGCCACTTTATTTATCTTTGTT
GCAGACATTGGGGCCGTTGTCTTAACCCAACCACATCAGTACCCGAGCAA
CCCGTATAGCTATAATTTGCGTGGAAGCCATCCCATTGGAAGCAACCTTG
GGTTGGGAAAGTTTTTACGAAGAAATGCTCTGGAACGCCCCTGTGTCACG
CCCGTGTTTTCAAGTTCGAATCCATATCGAAACTATTCACTCAGTGTTTG
TCATCTTCTGAACCTCAAACAAGCTCACAAAAATTCCACGGAGAGTGTGG
ACTCTGTAAAGATTGGTTCATGGTTCCACAAAGGAGGCAGCGACCATCAC
CTAACTTTTGGTAATTCCAGTATTGAGATCAGAACTCGTGCGTTTGTTTA
CGGAGCAAGTGGTGGGACAAGGAGACTGCTATTTCCCATTCTGTATCCAA
GTTATATGGCATCCACCCATTATCTCCATCAAATAGTCATATACATGATA
TTACAGGAAAGCTGCAATGCCAAGCGCAGCACGAAACGCTGTGAAGACGC
CGTAGCTGAGCATTGGAGCGAAACTGAACCGGTGATTAGGGTGATAAAGC
TGTGGACATCCAGGCGAGGCAAGACAAAGGAAAAAGTGCAAGGTTCAGAG
ACGACTTTAAGATATAGGATACACTCAAGGCCGTGGATCACTGTCTTGAA
GAGTATAGGACCATTGATGACGGCGGAGCTTATTGAGGAAGTTAAGGGAC
CTGGTTTCTACTCTCATATAGTATCCGAGAAAGAGCAAGATAGTATTCCA
GGGCTCATTGTCCAGGAACGAAGGCCATTAGGGATACTTGGAATGCTTTT
CTGCACGAGCCTCATGCTCATTGCTTTAATCACATTGAAAAGAATACTTC
AGCCGGTTTTTCTTGCCGATCGTGCCTGGGAAAATTTTGAGAGAAACGTT
TTGAGTAAGCTTGAAATGGAAGATAAGTGTTCTTCCGGTGCTGTGACATT
GGGTAAGGAGGCAAGTTCAGATGAGAAGCTACCTGCAGAACGTCTATCTC
ACTATAGATCAGAGGTTGAGTGA
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Coding sequence (CDS) from alignment at ScGOVlb_3404:3791857..3793329-

>Gvermi12190.t1 ID=Gvermi12190.t1|Name=Gvermi12190.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=CDS|length=1473bp|location=Sequence derived from alignment at ScGOVlb_3404:3791857..3793329- (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
ATGGTCGGATACTTATCACCGATGAATCGAACAATTCTCACAGCTATTCC
TACGCCCCCGCCGGATTTTGTGAACATATCTAATGAGAATCAGTCTCCAG
GACAGTATGTGATCGGTCAGACCCATTTTATACCGGAGAAATCCATCAAT
AGCCCTGGAATGCTATCACGGAGCTTAGACGGGGCTTCGGAGGAAATTAT
CTTGGGATTGCTGTCGATTGTCATGATAATGACAATCACCGAAGTAGTGC
TTACTATTCTTTCTCGAAAGAGACAACACCAAGACCCTGAAAGAAACCAA
TTGGCGCTCGTTGCCATCAAAGTGGATGGGCTGCTGCATCTAAGTACAAA
ATGGATGAATCGCCGAGAGCACTTATTTTCACCTCACAAACGACAGAAAG
ATGTCATCTTGTCGCTCTTAGCCTTATCAGCCACTTTATTTATCTTTGTT
GCAGACATTGGGGCCGTTGTCTTAACCCAACCACATCAGTACCCGAGCAA
CCCGTATAGCTATAATTTGCGTGGAAGCCATCCCATTGGAAGCAACCTTG
GGTTGGGAAAGTTTTTACGAAGAAATGCTCTGGAACGCCCCTGTGTCACG
CCCGTGTTTTCAAGTTCGAATCCATATCGAAACTATTCACTCAGTGTTTG
TCATCTTCTGAACCTCAAACAAGCTCACAAAAATTCCACGGAGAGTGTGG
ACTCTGTAAAGATTGGTTCATGGTTCCACAAAGGAGGCAGCGACCATCAC
CTAACTTTTGGTAATTCCAGTATTGAGATCAGAACTCGTGCGTTTGTTTA
CGGAGCAAGTGGTGGGACAAGGAGACTGCTATTTCCCATTCTGTATCCAA
GTTATATGGCATCCACCCATTATCTCCATCAAATAGTCATATACATGATA
TTACAGGAAAGCTGCAATGCCAAGCGCAGCACGAAACGCTGTGAAGACGC
CGTAGCTGAGCATTGGAGCGAAACTGAACCGGTGATTAGGGTGATAAAGC
TGTGGACATCCAGGCGAGGCAAGACAAAGGAAAAAGTGCAAGGTTCAGAG
ACGACTTTAAGATATAGGATACACTCAAGGCCGTGGATCACTGTCTTGAA
GAGTATAGGACCATTGATGACGGCGGAGCTTATTGAGGAAGTTAAGGGAC
CTGGTTTCTACTCTCATATAGTATCCGAGAAAGAGCAAGATAGTATTCCA
GGGCTCATTGTCCAGGAACGAAGGCCATTAGGGATACTTGGAATGCTTTT
CTGCACGAGCCTCATGCTCATTGCTTTAATCACATTGAAAAGAATACTTC
AGCCGGTTTTTCTTGCCGATCGTGCCTGGGAAAATTTTGAGAGAAACGTT
TTGAGTAAGCTTGAAATGGAAGATAAGTGTTCTTCCGGTGCTGTGACATT
GGGTAAGGAGGCAAGTTCAGATGAGAAGCTACCTGCAGAACGTCTATCTC
ACTATAGATCAGAGGTTGAGTGA
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