Gvermi12333.t1 (mRNA) Gracilaria vermiculophylla HapMaleFtJ_2017 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGvermi12333.t1
Unique NameGvermi12333.t1
TypemRNA
OrganismGracilaria vermiculophylla HapMaleFtJ_2017 male (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
Sequence length401
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
ScGOVlb_3404contigScGOVlb_3404:4257947..4259238 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria vermiculophylla HapMaleFtJ_2017 male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog756067.MicvaDRAFT_1735
PFAMsDUF2235
Max annot lvl1117|Cyanobacteria
Evalue1.69e-78
EggNOG OGsCOG3673@1|root,COG3673@2|Bacteria,1G1VC@1117|Cyanobacteria,1H9I8@1150|Oscillatoriales
Description'Conserved protein
COG categoryS
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Gvermi12333Gvermi12333Gracilaria vermiculophylla HapMaleFtJ_2017 malegeneScGOVlb_3404 4257947..4259238 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi12333.t1Gvermi12333.t1Gracilaria vermiculophylla HapMaleFtJ_2017 malepolypeptideScGOVlb_3404 4257947..4259238 +


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi12333.t1.start1Gvermi12333.t1.start1Gracilaria vermiculophylla HapMaleFtJ_2017 malestart_codonScGOVlb_3404 4257947..4257949 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi12333.t1.CDS1Gvermi12333.t1.CDS1Gracilaria vermiculophylla HapMaleFtJ_2017 maleCDSScGOVlb_3404 4257947..4258161 +
Gvermi12333.t1.CDS2Gvermi12333.t1.CDS2Gracilaria vermiculophylla HapMaleFtJ_2017 maleCDSScGOVlb_3404 4258251..4259238 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi12333.t1.exon1Gvermi12333.t1.exon1Gracilaria vermiculophylla HapMaleFtJ_2017 maleexonScGOVlb_3404 4257947..4258161 +
Gvermi12333.t1.exon2Gvermi12333.t1.exon2Gracilaria vermiculophylla HapMaleFtJ_2017 maleexonScGOVlb_3404 4258251..4259238 +


The following intron feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi12333.t1.intron1Gvermi12333.t1.intron1Gracilaria vermiculophylla HapMaleFtJ_2017 maleintronScGOVlb_3404 4258162..4258250 +


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi12333.t1.stop1Gvermi12333.t1.stop1Gracilaria vermiculophylla HapMaleFtJ_2017 malestop_codonScGOVlb_3404 4259236..4259238 +


Sequences
The following sequences are available for this feature:

mRNA sequence

>Gvermi12333.t1 ID=Gvermi12333.t1|Name=Gvermi12333.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=401bp
LPCFINAGSSFTPLQGRGLRHTSSRCTRRPATIGPIASRQIGTPQTTPTA
PTIKTDLPSKRICVFSDGSWNSPELDSLTNISFLAQAVQYAGPSGVPQVV
FYDEGVGTEGDAFDRIKGGAMGTGIDLNIKQLYTFIVMNYVEGDEIYLFG
FSRGAYTVRSLAGMMNEAGLLYRNKLDFVSEAYTLYRENESAESEEAKKF
RADHGRRVPITALVCFDTVGALGVPSYAPFPFSLFSNTQKYAFHDITLSE
LVQNAIHVVSIDEEMVPFEPTLMKHNEKIGESQLTQVYMPGRHGGIGGGN
KAGEPLARNALKFVVDEMKRRGLKLDIDSDVVPKDYVLDCAPTGRPSRMS
LFGIVGLTMGMRDRKIDSYESLHECVPKMYRSLKWRPGALEPFKEKLLAE
*
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spliced messenger RNA

>Gvermi12333.t1 ID=Gvermi12333.t1|Name=Gvermi12333.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=1203bp|location=Sequence derived from alignment at ScGOVlb_3404:4257947..4259238+ (Gracilaria vermiculophylla HapMaleFtJ_2017 male)|Notes=Excludes all bases but those of type(s): exon.  
CTGCCATGCTTTATTAACGCTGGTTCTTCTTTCACCCCACTGCAAGGCCG
CGGTCTGCGACATACCTCAAGTCGGTGCACGCGTCGCCCCGCTACTATCG
GACCCATAGCATCTCGTCAAATTGGAACCCCTCAAACTACGCCCACTGCT
CCTACGATAAAAACGGATCTCCCTTCGAAACGTATATGCGTCTTTTCGGA
CGGCAGTTGGAACTCTCCTGAGTTAGATTCTCTCACCAACATATCATTCC
TTGCGCAAGCCGTTCAGTATGCGGGTCCAAGTGGCGTGCCCCAAGTCGTT
TTTTACGATGAAGGGGTCGGAACGGAGGGCGACGCTTTCGACCGAATCAA
GGGCGGCGCAATGGGAACCGGCATAGATTTAAACATTAAGCAACTGTACA
CGTTCATCGTGATGAATTACGTAGAGGGTGATGAGATTTACCTTTTTGGT
TTCTCTCGCGGAGCATACACCGTACGCTCCCTCGCTGGAATGATGAATGA
AGCCGGGTTGCTTTATCGAAACAAATTGGACTTCGTCTCTGAAGCTTATA
CGCTTTACCGAGAGAATGAATCTGCTGAATCTGAGGAGGCCAAGAAGTTC
CGCGCGGACCATGGACGTCGTGTTCCAATTACGGCGCTCGTGTGCTTTGA
TACGGTGGGTGCGCTGGGTGTTCCTTCGTATGCACCATTTCCGTTTTCAC
TGTTTTCGAATACGCAGAAGTACGCGTTTCACGACATCACACTCTCTGAG
CTGGTGCAAAACGCCATTCATGTGGTAAGCATTGACGAAGAGATGGTTCC
GTTCGAACCAACGCTCATGAAACATAACGAAAAGATTGGTGAATCTCAGC
TGACGCAAGTGTACATGCCGGGCCGTCATGGGGGCATAGGAGGTGGAAAT
AAAGCGGGTGAACCACTGGCCAGAAATGCTCTGAAGTTCGTGGTTGATGA
AATGAAGCGTAGGGGACTTAAGCTAGATATCGACAGTGACGTGGTGCCCA
AGGATTATGTGTTGGATTGCGCCCCGACTGGACGGCCGTCAAGAATGTCG
CTGTTTGGCATTGTTGGACTGACGATGGGCATGAGAGACCGGAAGATTGA
CTCGTATGAAAGTCTGCACGAGTGCGTTCCAAAAATGTACCGCTCACTGA
AATGGCGTCCAGGTGCTTTGGAGCCGTTCAAAGAGAAATTGCTCGCGGAG
TAG
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protein sequence of Gvermi12333.t1

>Gvermi12333.t1 ID=Gvermi12333.t1|Name=Gvermi12333.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=polypeptide|length=401bp
LPCFINAGSSFTPLQGRGLRHTSSRCTRRPATIGPIASRQIGTPQTTPTA
PTIKTDLPSKRICVFSDGSWNSPELDSLTNISFLAQAVQYAGPSGVPQVV
FYDEGVGTEGDAFDRIKGGAMGTGIDLNIKQLYTFIVMNYVEGDEIYLFG
FSRGAYTVRSLAGMMNEAGLLYRNKLDFVSEAYTLYRENESAESEEAKKF
RADHGRRVPITALVCFDTVGALGVPSYAPFPFSLFSNTQKYAFHDITLSE
LVQNAIHVVSIDEEMVPFEPTLMKHNEKIGESQLTQVYMPGRHGGIGGGN
KAGEPLARNALKFVVDEMKRRGLKLDIDSDVVPKDYVLDCAPTGRPSRMS
LFGIVGLTMGMRDRKIDSYESLHECVPKMYRSLKWRPGALEPFKEKLLAE
*
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mRNA from alignment at ScGOVlb_3404:4257947..4259238+

Legend: polypeptidestart_codonCDSexonintronstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Gvermi12333.t1 ID=Gvermi12333.t1|Name=Gvermi12333.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=1292bp|location=Sequence derived from alignment at ScGOVlb_3404:4257947..4259238+ (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
CTGCCATGCTTTATTAACGCTGGTTCTTCTTTCACCCCACTGCAAGGCCG
CGGTCTGCGACATACCTCAAGTCGGTGCACGCGTCGCCCCGCTACTATCG
GACCCATAGCATCTCGTCAAATTGGAACCCCTCAAACTACGCCCACTGCT
CCTACGATAAAAACGGATCTCCCTTCGAAACGTATATGCGTCTTTTCGGA
CGGCAGTTGGAACTCGTAAGTGCTTACTCACATGCTAAGGCCTCGTGGTG
AAGCATATTTTTGTTCTCGGTCTTACTAACCCTATGCGTTCCGCGAATGC
AAAGTCCTGAGTTAGATTCTCTCACCAACATATCATTCCTTGCGCAAGCC
GTTCAGTATGCGGGTCCAAGTGGCGTGCCCCAAGTCGTTTTTTACGATGA
AGGGGTCGGAACGGAGGGCGACGCTTTCGACCGAATCAAGGGCGGCGCAA
TGGGAACCGGCATAGATTTAAACATTAAGCAACTGTACACGTTCATCGTG
ATGAATTACGTAGAGGGTGATGAGATTTACCTTTTTGGTTTCTCTCGCGG
AGCATACACCGTACGCTCCCTCGCTGGAATGATGAATGAAGCCGGGTTGC
TTTATCGAAACAAATTGGACTTCGTCTCTGAAGCTTATACGCTTTACCGA
GAGAATGAATCTGCTGAATCTGAGGAGGCCAAGAAGTTCCGCGCGGACCA
TGGACGTCGTGTTCCAATTACGGCGCTCGTGTGCTTTGATACGGTGGGTG
CGCTGGGTGTTCCTTCGTATGCACCATTTCCGTTTTCACTGTTTTCGAAT
ACGCAGAAGTACGCGTTTCACGACATCACACTCTCTGAGCTGGTGCAAAA
CGCCATTCATGTGGTAAGCATTGACGAAGAGATGGTTCCGTTCGAACCAA
CGCTCATGAAACATAACGAAAAGATTGGTGAATCTCAGCTGACGCAAGTG
TACATGCCGGGCCGTCATGGGGGCATAGGAGGTGGAAATAAAGCGGGTGA
ACCACTGGCCAGAAATGCTCTGAAGTTCGTGGTTGATGAAATGAAGCGTA
GGGGACTTAAGCTAGATATCGACAGTGACGTGGTGCCCAAGGATTATGTG
TTGGATTGCGCCCCGACTGGACGGCCGTCAAGAATGTCGCTGTTTGGCAT
TGTTGGACTGACGATGGGCATGAGAGACCGGAAGATTGACTCGTATGAAA
GTCTGCACGAGTGCGTTCCAAAAATGTACCGCTCACTGAAATGGCGTCCA
GGTGCTTTGGAGCCGTTCAAAGAGAAATTGCTCGCGGAGTAG
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Coding sequence (CDS) from alignment at ScGOVlb_3404:4257947..4259238+

>Gvermi12333.t1 ID=Gvermi12333.t1|Name=Gvermi12333.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=CDS|length=1203bp|location=Sequence derived from alignment at ScGOVlb_3404:4257947..4259238+ (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
CTGCCATGCTTTATTAACGCTGGTTCTTCTTTCACCCCACTGCAAGGCCG
CGGTCTGCGACATACCTCAAGTCGGTGCACGCGTCGCCCCGCTACTATCG
GACCCATAGCATCTCGTCAAATTGGAACCCCTCAAACTACGCCCACTGCT
CCTACGATAAAAACGGATCTCCCTTCGAAACGTATATGCGTCTTTTCGGA
CGGCAGTTGGAACTCTCCTGAGTTAGATTCTCTCACCAACATATCATTCC
TTGCGCAAGCCGTTCAGTATGCGGGTCCAAGTGGCGTGCCCCAAGTCGTT
TTTTACGATGAAGGGGTCGGAACGGAGGGCGACGCTTTCGACCGAATCAA
GGGCGGCGCAATGGGAACCGGCATAGATTTAAACATTAAGCAACTGTACA
CGTTCATCGTGATGAATTACGTAGAGGGTGATGAGATTTACCTTTTTGGT
TTCTCTCGCGGAGCATACACCGTACGCTCCCTCGCTGGAATGATGAATGA
AGCCGGGTTGCTTTATCGAAACAAATTGGACTTCGTCTCTGAAGCTTATA
CGCTTTACCGAGAGAATGAATCTGCTGAATCTGAGGAGGCCAAGAAGTTC
CGCGCGGACCATGGACGTCGTGTTCCAATTACGGCGCTCGTGTGCTTTGA
TACGGTGGGTGCGCTGGGTGTTCCTTCGTATGCACCATTTCCGTTTTCAC
TGTTTTCGAATACGCAGAAGTACGCGTTTCACGACATCACACTCTCTGAG
CTGGTGCAAAACGCCATTCATGTGGTAAGCATTGACGAAGAGATGGTTCC
GTTCGAACCAACGCTCATGAAACATAACGAAAAGATTGGTGAATCTCAGC
TGACGCAAGTGTACATGCCGGGCCGTCATGGGGGCATAGGAGGTGGAAAT
AAAGCGGGTGAACCACTGGCCAGAAATGCTCTGAAGTTCGTGGTTGATGA
AATGAAGCGTAGGGGACTTAAGCTAGATATCGACAGTGACGTGGTGCCCA
AGGATTATGTGTTGGATTGCGCCCCGACTGGACGGCCGTCAAGAATGTCG
CTGTTTGGCATTGTTGGACTGACGATGGGCATGAGAGACCGGAAGATTGA
CTCGTATGAAAGTCTGCACGAGTGCGTTCCAAAAATGTACCGCTCACTGA
AATGGCGTCCAGGTGCTTTGGAGCCGTTCAAAGAGAAATTGCTCGCGGAG
TAG
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