Gvermi12162.t1 (mRNA) Gracilaria vermiculophylla HapMaleFtJ_2017 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGvermi12162.t1
Unique NameGvermi12162.t1
TypemRNA
OrganismGracilaria vermiculophylla HapMaleFtJ_2017 male (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
Sequence length445
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
ScGOVlb_3404contigScGOVlb_3404:3634681..3636015 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria vermiculophylla HapMaleFtJ_2017 male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog88036.EFJ07239
PFAMsGround-like,Hint,Kelch_4
Max annot lvl2759|Eukaryota
KEGG koko:K06224,ko:K11990,ko:K16669
KEGG Pathwayko04340,ko04341,ko04391,ko04392,map04340,map04341,map04391,map04392
KEGG ModuleM00678
GOsGO:0003002,GO:0003674,GO:0003824,GO:0004175,GO:0005102,GO:0005488,GO:0005496,GO:0005515,GO:0005575,GO:0005576,GO:0005623,GO:0005886,GO:0006508,GO:0006807,GO:0007154,GO:0007267,GO:0007275,GO:0007350,GO:0007365,GO:0007367,GO:0007389,GO:0008150,GO:0008152,GO:0008233,GO:0008289,GO:0009790,GO:0009880,GO:0009987,GO:0010467,GO:0015485,GO:0016020,GO:0016485,GO:0016540,GO:0016787,GO:0019538,GO:0023052,GO:0032501,GO:0032502,GO:0032934,GO:0035282,GO:0036094,GO:0043170,GO:0043178,GO:0044238,GO:0044464,GO:0048856,GO:0051604,GO:0070011,GO:0071704,GO:0071944,GO:0097159,GO:0140096,GO:1901564
Evalue4e-18
EggNOG OGsKOG3638@1|root,KOG3638@2759|Eukaryota
Descriptionintein-mediated protein splicing
COG categoryM
BRITEko00000,ko00001,ko00002,ko00536,ko01002,ko04516
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Gvermi12162Gvermi12162Gracilaria vermiculophylla HapMaleFtJ_2017 malegeneScGOVlb_3404 3634681..3636015 -


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi12162.t1.stop1Gvermi12162.t1.stop1Gracilaria vermiculophylla HapMaleFtJ_2017 malestop_codonScGOVlb_3404 3634681..3634683 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi12162.t1.CDS1Gvermi12162.t1.CDS1Gracilaria vermiculophylla HapMaleFtJ_2017 maleCDSScGOVlb_3404 3634681..3636015 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi12162.t1.exon1Gvermi12162.t1.exon1Gracilaria vermiculophylla HapMaleFtJ_2017 maleexonScGOVlb_3404 3634681..3636015 -


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi12162.t1.start1Gvermi12162.t1.start1Gracilaria vermiculophylla HapMaleFtJ_2017 malestart_codonScGOVlb_3404 3636013..3636015 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi12162.t1Gvermi12162.t1Gracilaria vermiculophylla HapMaleFtJ_2017 malepolypeptideScGOVlb_3404 3634681..3636015 -


Sequences
The following sequences are available for this feature:

mRNA sequence

>Gvermi12162.t1 ID=Gvermi12162.t1|Name=Gvermi12162.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=445bp
MSVYIVLCVLTAALQLAFSEPLERFATPSDIEANWNLIELVGSNATACPA
TITHTSWMRLSSSAVTLPHNTILVNRVRCDGQDKGPSFLMYVSTKYFQNL
SHKEGVDPLPQRMKDIIMTTGPNIAARTAILATGEQFLMGYEAHQRWCKG
SVFFEAGTTSYLVRPFAPFRIPNITSEFLPGTKYLLMIPLFRATTCVYSA
QLRAPVEVPTTILPLETPEAEEQTSEPEPASQTNPVQEGDDVANETEDSA
DNQSNANDSNVETDDDDVCFPASATVLLRNGSTISISDVQIGDSILVSQH
TYSKVFAFSHRDKHIHTTFYTLRTLFGKVISATKGHFIYADHQLLPIESI
KVGQKLHTVSGLSPVTVITKEELIGLYNPQTEHGDIVVNGVIASTYTKSL
NPSIAHAALTPVRAISKICRGDILAWLIDSGVKQLPGRSWIRAA*
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spliced messenger RNA

>Gvermi12162.t1 ID=Gvermi12162.t1|Name=Gvermi12162.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=1335bp|location=Sequence derived from alignment at ScGOVlb_3404:3634681..3636015- (Gracilaria vermiculophylla HapMaleFtJ_2017 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGTCTGTTTATATCGTTTTGTGTGTTTTGACAGCGGCGCTTCAATTGGC
TTTTTCCGAGCCGCTCGAGAGATTCGCCACTCCATCTGATATTGAAGCCA
ATTGGAATCTCATCGAGCTTGTAGGGTCTAATGCAACCGCCTGTCCGGCC
ACGATCACCCATACCTCCTGGATGAGACTGTCCTCTAGTGCTGTCACTCT
GCCGCACAATACCATCCTAGTCAACCGCGTTCGCTGCGATGGACAAGACA
AAGGTCCGAGCTTCCTCATGTATGTCAGCACCAAGTACTTCCAGAACCTT
TCCCACAAGGAAGGCGTCGACCCGCTGCCACAACGAATGAAAGATATCAT
CATGACAACCGGTCCCAATATCGCCGCAAGAACAGCAATTCTGGCAACTG
GAGAACAGTTTCTCATGGGTTATGAAGCCCATCAAAGATGGTGCAAAGGT
TCTGTCTTCTTCGAGGCTGGCACGACATCCTATTTGGTCCGCCCATTTGC
TCCATTCAGAATTCCAAATATCACCTCCGAGTTCCTTCCGGGCACCAAGT
ACTTGCTTATGATTCCGCTCTTCAGAGCTACGACTTGCGTCTACTCCGCT
CAGTTGAGAGCTCCTGTCGAGGTACCTACTACTATTCTACCTCTCGAAAC
CCCAGAAGCGGAGGAACAGACTTCTGAACCTGAGCCTGCGTCACAGACCA
ATCCTGTCCAAGAAGGCGACGATGTTGCAAACGAAACTGAAGACTCTGCC
GATAATCAGTCAAATGCCAATGATTCAAACGTGGAAACCGATGATGATGA
CGTATGCTTTCCAGCTTCAGCAACGGTTTTGCTTCGAAATGGTTCGACGA
TAAGCATTTCCGATGTACAAATTGGGGATAGTATATTAGTTTCCCAGCAT
ACTTATTCCAAAGTCTTCGCTTTTTCTCATCGGGACAAGCACATCCACAC
AACCTTTTACACGCTCCGAACACTGTTTGGAAAGGTGATCTCCGCAACGA
AGGGGCATTTTATCTATGCCGATCACCAACTACTACCAATTGAATCCATC
AAGGTGGGTCAAAAGCTCCATACTGTCAGCGGCTTAAGCCCTGTAACAGT
CATCACCAAAGAAGAATTGATAGGCCTCTATAATCCACAAACCGAACATG
GCGACATCGTGGTGAACGGCGTCATTGCCAGCACATATACGAAGTCGCTC
AACCCGTCTATTGCACACGCAGCACTGACCCCCGTTCGTGCAATCTCTAA
GATCTGTCGTGGCGACATCCTGGCTTGGTTGATAGATTCTGGTGTGAAAC
AATTACCCGGACGGAGTTGGATACGAGCGGCGTAG
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protein sequence of Gvermi12162.t1

>Gvermi12162.t1 ID=Gvermi12162.t1|Name=Gvermi12162.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=polypeptide|length=445bp
MSVYIVLCVLTAALQLAFSEPLERFATPSDIEANWNLIELVGSNATACPA
TITHTSWMRLSSSAVTLPHNTILVNRVRCDGQDKGPSFLMYVSTKYFQNL
SHKEGVDPLPQRMKDIIMTTGPNIAARTAILATGEQFLMGYEAHQRWCKG
SVFFEAGTTSYLVRPFAPFRIPNITSEFLPGTKYLLMIPLFRATTCVYSA
QLRAPVEVPTTILPLETPEAEEQTSEPEPASQTNPVQEGDDVANETEDSA
DNQSNANDSNVETDDDDVCFPASATVLLRNGSTISISDVQIGDSILVSQH
TYSKVFAFSHRDKHIHTTFYTLRTLFGKVISATKGHFIYADHQLLPIESI
KVGQKLHTVSGLSPVTVITKEELIGLYNPQTEHGDIVVNGVIASTYTKSL
NPSIAHAALTPVRAISKICRGDILAWLIDSGVKQLPGRSWIRAA*
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mRNA from alignment at ScGOVlb_3404:3634681..3636015-

Legend: polypeptideCDSexonstart_codonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Gvermi12162.t1 ID=Gvermi12162.t1|Name=Gvermi12162.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=1335bp|location=Sequence derived from alignment at ScGOVlb_3404:3634681..3636015- (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
ATGTCTGTTTATATCGTTTTGTGTGTTTTGACAGCGGCGCTTCAATTGGC
TTTTTCCGAGCCGCTCGAGAGATTCGCCACTCCATCTGATATTGAAGCCA
ATTGGAATCTCATCGAGCTTGTAGGGTCTAATGCAACCGCCTGTCCGGCC
ACGATCACCCATACCTCCTGGATGAGACTGTCCTCTAGTGCTGTCACTCT
GCCGCACAATACCATCCTAGTCAACCGCGTTCGCTGCGATGGACAAGACA
AAGGTCCGAGCTTCCTCATGTATGTCAGCACCAAGTACTTCCAGAACCTT
TCCCACAAGGAAGGCGTCGACCCGCTGCCACAACGAATGAAAGATATCAT
CATGACAACCGGTCCCAATATCGCCGCAAGAACAGCAATTCTGGCAACTG
GAGAACAGTTTCTCATGGGTTATGAAGCCCATCAAAGATGGTGCAAAGGT
TCTGTCTTCTTCGAGGCTGGCACGACATCCTATTTGGTCCGCCCATTTGC
TCCATTCAGAATTCCAAATATCACCTCCGAGTTCCTTCCGGGCACCAAGT
ACTTGCTTATGATTCCGCTCTTCAGAGCTACGACTTGCGTCTACTCCGCT
CAGTTGAGAGCTCCTGTCGAGGTACCTACTACTATTCTACCTCTCGAAAC
CCCAGAAGCGGAGGAACAGACTTCTGAACCTGAGCCTGCGTCACAGACCA
ATCCTGTCCAAGAAGGCGACGATGTTGCAAACGAAACTGAAGACTCTGCC
GATAATCAGTCAAATGCCAATGATTCAAACGTGGAAACCGATGATGATGA
CGTATGCTTTCCAGCTTCAGCAACGGTTTTGCTTCGAAATGGTTCGACGA
TAAGCATTTCCGATGTACAAATTGGGGATAGTATATTAGTTTCCCAGCAT
ACTTATTCCAAAGTCTTCGCTTTTTCTCATCGGGACAAGCACATCCACAC
AACCTTTTACACGCTCCGAACACTGTTTGGAAAGGTGATCTCCGCAACGA
AGGGGCATTTTATCTATGCCGATCACCAACTACTACCAATTGAATCCATC
AAGGTGGGTCAAAAGCTCCATACTGTCAGCGGCTTAAGCCCTGTAACAGT
CATCACCAAAGAAGAATTGATAGGCCTCTATAATCCACAAACCGAACATG
GCGACATCGTGGTGAACGGCGTCATTGCCAGCACATATACGAAGTCGCTC
AACCCGTCTATTGCACACGCAGCACTGACCCCCGTTCGTGCAATCTCTAA
GATCTGTCGTGGCGACATCCTGGCTTGGTTGATAGATTCTGGTGTGAAAC
AATTACCCGGACGGAGTTGGATACGAGCGGCGTAG
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Coding sequence (CDS) from alignment at ScGOVlb_3404:3634681..3636015-

>Gvermi12162.t1 ID=Gvermi12162.t1|Name=Gvermi12162.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=CDS|length=1335bp|location=Sequence derived from alignment at ScGOVlb_3404:3634681..3636015- (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
ATGTCTGTTTATATCGTTTTGTGTGTTTTGACAGCGGCGCTTCAATTGGC
TTTTTCCGAGCCGCTCGAGAGATTCGCCACTCCATCTGATATTGAAGCCA
ATTGGAATCTCATCGAGCTTGTAGGGTCTAATGCAACCGCCTGTCCGGCC
ACGATCACCCATACCTCCTGGATGAGACTGTCCTCTAGTGCTGTCACTCT
GCCGCACAATACCATCCTAGTCAACCGCGTTCGCTGCGATGGACAAGACA
AAGGTCCGAGCTTCCTCATGTATGTCAGCACCAAGTACTTCCAGAACCTT
TCCCACAAGGAAGGCGTCGACCCGCTGCCACAACGAATGAAAGATATCAT
CATGACAACCGGTCCCAATATCGCCGCAAGAACAGCAATTCTGGCAACTG
GAGAACAGTTTCTCATGGGTTATGAAGCCCATCAAAGATGGTGCAAAGGT
TCTGTCTTCTTCGAGGCTGGCACGACATCCTATTTGGTCCGCCCATTTGC
TCCATTCAGAATTCCAAATATCACCTCCGAGTTCCTTCCGGGCACCAAGT
ACTTGCTTATGATTCCGCTCTTCAGAGCTACGACTTGCGTCTACTCCGCT
CAGTTGAGAGCTCCTGTCGAGGTACCTACTACTATTCTACCTCTCGAAAC
CCCAGAAGCGGAGGAACAGACTTCTGAACCTGAGCCTGCGTCACAGACCA
ATCCTGTCCAAGAAGGCGACGATGTTGCAAACGAAACTGAAGACTCTGCC
GATAATCAGTCAAATGCCAATGATTCAAACGTGGAAACCGATGATGATGA
CGTATGCTTTCCAGCTTCAGCAACGGTTTTGCTTCGAAATGGTTCGACGA
TAAGCATTTCCGATGTACAAATTGGGGATAGTATATTAGTTTCCCAGCAT
ACTTATTCCAAAGTCTTCGCTTTTTCTCATCGGGACAAGCACATCCACAC
AACCTTTTACACGCTCCGAACACTGTTTGGAAAGGTGATCTCCGCAACGA
AGGGGCATTTTATCTATGCCGATCACCAACTACTACCAATTGAATCCATC
AAGGTGGGTCAAAAGCTCCATACTGTCAGCGGCTTAAGCCCTGTAACAGT
CATCACCAAAGAAGAATTGATAGGCCTCTATAATCCACAAACCGAACATG
GCGACATCGTGGTGAACGGCGTCATTGCCAGCACATATACGAAGTCGCTC
AACCCGTCTATTGCACACGCAGCACTGACCCCCGTTCGTGCAATCTCTAA
GATCTGTCGTGGCGACATCCTGGCTTGGTTGATAGATTCTGGTGTGAAAC
AATTACCCGGACGGAGTTGGATACGAGCGGCGTAG
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