Gvermi12428.t1 (mRNA) Gracilaria vermiculophylla HapMaleFtJ_2017 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	Gvermi12428.t1
Unique Name	Gvermi12428.t1
Type	mRNA
Organism	Gracilaria vermiculophylla HapMaleFtJ_2017 male (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
Sequence length	595

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
ScGOVlb_3404	contig	ScGOVlb_3404:4690108..4691892 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gracilaria vermiculophylla HapMaleFtJ_2017 male OGS1.0	2022-05-09

Properties


Property Name	Value
Seed ortholog	118168.MC7420_2401
PFAMs	Amino_oxidase,NAD_binding_8
Max annot lvl	1117\|Cyanobacteria
KEGG rclass	RC01960
KEGG ko	ko:K09835
KEGG Reaction	R07512
KEGG Pathway	ko00906,ko01100,ko01110,map00906,map01100,map01110
KEGG Module	M00097
Evalue	1.22e-132
EggNOG OGs	COG1233@1\|root,COG1233@2\|Bacteria,1G0AY@1117\|Cyanobacteria,1H879@1150\|Oscillatoriales
EC	5.2.1.13
Description	FAD dependent oxidoreductase
COG category	Q
BRITE	ko00000,ko00001,ko00002,ko01000

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
Gvermi12428	Gvermi12428	Gracilaria vermiculophylla HapMaleFtJ_2017 male	gene	ScGOVlb_3404 4690108..4691892 +

The following start_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gvermi12428.t1.start1	Gvermi12428.t1.start1	Gracilaria vermiculophylla HapMaleFtJ_2017 male	start_codon	ScGOVlb_3404 4690108..4690110 +

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gvermi12428.t1.CDS1	Gvermi12428.t1.CDS1	Gracilaria vermiculophylla HapMaleFtJ_2017 male	CDS	ScGOVlb_3404 4690108..4691892 +

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gvermi12428.t1.exon1	Gvermi12428.t1.exon1	Gracilaria vermiculophylla HapMaleFtJ_2017 male	exon	ScGOVlb_3404 4690108..4691892 +

The following stop_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gvermi12428.t1.stop1	Gvermi12428.t1.stop1	Gracilaria vermiculophylla HapMaleFtJ_2017 male	stop_codon	ScGOVlb_3404 4691890..4691892 +

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gvermi12428.t1	Gvermi12428.t1	Gracilaria vermiculophylla HapMaleFtJ_2017 male	polypeptide	ScGOVlb_3404 4690108..4691892 +

Sequences

The following sequences are available for this feature:

mRNA sequence
mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at ScGOVlb_3404:4690108..4691892+
coding sequence from alignment at ScGOVlb_3404:4690108..4691892+

mRNA sequence

>Gvermi12428.t1 ID=Gvermi12428.t1|Name=Gvermi12428.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=595bp
MESEAPRVPLPPAFCSFTAAAVINKRISSGRQSEGFYRQPHGTKVSRAKI
LIRSSSADESYDVITIGSGLGGLCASALLSTYNLRTLTLESHTEPGGAAH
SFSRRTPYGTITFESGPHLFSGLQFPSDNPMYHVLRAVDAKLDVISYDAW
GVFLPNSYVRTTLRAGEPLFEELLDVAGGPAAKAEMSNLTKVLRPMGEAA
TILPPAALRASDIVGSLRIAARYAFSFRSMSHISRIPQLSKPFSTILDSH
VSDKFARDFLNLLCFLLAGATADRVPVAEVAFMFREWLGDDAVFGAPVLQ
RPLGGASAIAKALIEAIEKRDGTVQTGAHVNRVIIEDGRAVGVQLKTGRT
IRAKKAVISNVSALDVSKLLPDWNTVEYYQAEVSRREMCPSFMHLHIALE
LTEDIRSRLPQGNLEPNYVSVEDWDLGLAHPDNVVLISVPSVLDKNVCPG
GHAVIHAYTPATEPYEMWRDLEPGTSEYEKYKEERSQVLWKAVNRIFGID
IRPKAYIKLVGTPKTHARFLRRRNGSYGPKVDANMGSLGFPFPGSGDFPK
DFYCVGDGVFPGVGVPAVAASAWIVANGIVNVRDQSKLLRKVGL*

spliced messenger RNA

>Gvermi12428.t1 ID=Gvermi12428.t1|Name=Gvermi12428.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=1785bp|location=Sequence derived from alignment at ScGOVlb_3404:4690108..4691892+ (Gracilaria vermiculophylla HapMaleFtJ_2017 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGGAATCAGAGGCACCAAGGGTACCGCTACCTCCCGCGTTTTGCTCGTT
CACCGCAGCCGCAGTTATTAACAAACGAATATCATCAGGCAGACAGTCAG
AGGGGTTTTATAGACAACCACATGGGACGAAAGTCAGCCGTGCTAAGATT
CTAATCCGCAGCTCCTCTGCCGACGAAAGTTACGATGTCATTACAATCGG
CTCAGGACTGGGTGGTCTTTGCGCCTCGGCGTTACTTTCCACGTACAATC
TACGTACACTTACACTTGAATCTCACACAGAGCCCGGTGGAGCAGCTCAT
TCTTTTTCAAGAAGAACACCTTACGGTACAATAACATTCGAGTCAGGACC
ACATCTGTTCTCGGGTCTTCAGTTTCCATCTGACAACCCCATGTACCACG
TTTTGCGCGCAGTCGATGCAAAACTTGATGTCATCAGCTACGATGCGTGG
GGAGTTTTTCTTCCAAATTCTTACGTTCGAACGACACTTCGAGCTGGAGA
GCCGCTTTTTGAAGAACTGCTCGATGTAGCCGGAGGTCCAGCGGCGAAAG
CCGAAATGAGCAATCTCACTAAGGTTTTGCGTCCGATGGGGGAGGCTGCA
ACTATTTTGCCACCGGCAGCATTGAGGGCTTCAGATATTGTTGGCTCCCT
TAGAATCGCAGCTAGATATGCATTTTCTTTTCGTTCCATGTCACATATCT
CACGAATACCTCAACTCTCAAAACCGTTTTCAACAATTCTCGACAGCCAT
GTATCTGACAAGTTCGCTCGCGATTTTCTGAACCTTTTATGTTTCTTGCT
CGCCGGAGCAACGGCAGACCGGGTTCCAGTTGCTGAAGTAGCTTTCATGT
TTCGTGAATGGCTCGGTGATGATGCTGTTTTCGGTGCCCCAGTTCTACAG
AGACCACTAGGAGGTGCTTCTGCCATCGCAAAAGCATTGATTGAAGCCAT
AGAGAAGCGAGATGGCACAGTGCAAACAGGAGCTCACGTCAATCGCGTTA
TAATCGAAGACGGTCGTGCAGTTGGGGTACAACTAAAAACCGGACGCACC
ATCCGGGCTAAAAAAGCTGTCATTTCGAATGTCTCCGCTCTTGATGTCAG
CAAGTTGCTGCCGGATTGGAACACCGTTGAATACTATCAAGCTGAAGTTA
GCAGGCGTGAAATGTGTCCATCCTTCATGCACCTCCACATTGCCCTCGAA
TTAACTGAAGATATTCGTTCTCGTTTGCCTCAGGGCAATCTGGAGCCAAA
TTATGTCAGCGTAGAAGACTGGGATCTTGGTTTGGCACATCCTGATAATG
TGGTTTTGATAAGTGTGCCGTCCGTTCTGGATAAAAATGTATGTCCAGGT
GGTCACGCAGTTATTCATGCGTATACACCAGCCACAGAACCATATGAGAT
GTGGAGGGATTTGGAACCCGGTACATCTGAGTACGAAAAGTACAAGGAAG
AACGATCTCAGGTTTTGTGGAAAGCCGTTAACCGCATCTTTGGAATCGAT
ATTCGTCCAAAAGCGTACATAAAGCTTGTGGGTACGCCTAAAACGCACGC
TCGCTTTCTTCGTCGACGTAATGGCTCGTATGGTCCGAAAGTTGATGCAA
ACATGGGAAGTTTGGGTTTTCCATTTCCAGGCAGTGGTGATTTCCCGAAA
GACTTTTACTGCGTTGGTGATGGTGTGTTTCCAGGAGTGGGCGTTCCTGC
TGTAGCTGCAAGCGCATGGATTGTGGCGAACGGAATAGTTAATGTTCGAG
ATCAGTCAAAACTCTTGAGAAAAGTAGGATTATGA

protein sequence of Gvermi12428.t1

>Gvermi12428.t1 ID=Gvermi12428.t1|Name=Gvermi12428.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=polypeptide|length=595bp
MESEAPRVPLPPAFCSFTAAAVINKRISSGRQSEGFYRQPHGTKVSRAKI
LIRSSSADESYDVITIGSGLGGLCASALLSTYNLRTLTLESHTEPGGAAH
SFSRRTPYGTITFESGPHLFSGLQFPSDNPMYHVLRAVDAKLDVISYDAW
GVFLPNSYVRTTLRAGEPLFEELLDVAGGPAAKAEMSNLTKVLRPMGEAA
TILPPAALRASDIVGSLRIAARYAFSFRSMSHISRIPQLSKPFSTILDSH
VSDKFARDFLNLLCFLLAGATADRVPVAEVAFMFREWLGDDAVFGAPVLQ
RPLGGASAIAKALIEAIEKRDGTVQTGAHVNRVIIEDGRAVGVQLKTGRT
IRAKKAVISNVSALDVSKLLPDWNTVEYYQAEVSRREMCPSFMHLHIALE
LTEDIRSRLPQGNLEPNYVSVEDWDLGLAHPDNVVLISVPSVLDKNVCPG
GHAVIHAYTPATEPYEMWRDLEPGTSEYEKYKEERSQVLWKAVNRIFGID
IRPKAYIKLVGTPKTHARFLRRRNGSYGPKVDANMGSLGFPFPGSGDFPK
DFYCVGDGVFPGVGVPAVAASAWIVANGIVNVRDQSKLLRKVGL*

mRNA from alignment at ScGOVlb_3404:4690108..4691892+

Legend: start_codonpolypeptideCDSexonstop_codon

Hold the cursor over a type above to highlight its positions in the sequence below.

>Gvermi12428.t1 ID=Gvermi12428.t1|Name=Gvermi12428.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=1785bp|location=Sequence derived from alignment at ScGOVlb_3404:4690108..4691892+ (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
ATGGAATCAGAGGCACCAAGGGTACCGCTACCTCCCGCGTTTTGCTCGTT
CACCGCAGCCGCAGTTATTAACAAACGAATATCATCAGGCAGACAGTCAG
AGGGGTTTTATAGACAACCACATGGGACGAAAGTCAGCCGTGCTAAGATT
CTAATCCGCAGCTCCTCTGCCGACGAAAGTTACGATGTCATTACAATCGG
CTCAGGACTGGGTGGTCTTTGCGCCTCGGCGTTACTTTCCACGTACAATC
TACGTACACTTACACTTGAATCTCACACAGAGCCCGGTGGAGCAGCTCAT
TCTTTTTCAAGAAGAACACCTTACGGTACAATAACATTCGAGTCAGGACC
ACATCTGTTCTCGGGTCTTCAGTTTCCATCTGACAACCCCATGTACCACG
TTTTGCGCGCAGTCGATGCAAAACTTGATGTCATCAGCTACGATGCGTGG
GGAGTTTTTCTTCCAAATTCTTACGTTCGAACGACACTTCGAGCTGGAGA
GCCGCTTTTTGAAGAACTGCTCGATGTAGCCGGAGGTCCAGCGGCGAAAG
CCGAAATGAGCAATCTCACTAAGGTTTTGCGTCCGATGGGGGAGGCTGCA
ACTATTTTGCCACCGGCAGCATTGAGGGCTTCAGATATTGTTGGCTCCCT
TAGAATCGCAGCTAGATATGCATTTTCTTTTCGTTCCATGTCACATATCT
CACGAATACCTCAACTCTCAAAACCGTTTTCAACAATTCTCGACAGCCAT
GTATCTGACAAGTTCGCTCGCGATTTTCTGAACCTTTTATGTTTCTTGCT
CGCCGGAGCAACGGCAGACCGGGTTCCAGTTGCTGAAGTAGCTTTCATGT
TTCGTGAATGGCTCGGTGATGATGCTGTTTTCGGTGCCCCAGTTCTACAG
AGACCACTAGGAGGTGCTTCTGCCATCGCAAAAGCATTGATTGAAGCCAT
AGAGAAGCGAGATGGCACAGTGCAAACAGGAGCTCACGTCAATCGCGTTA
TAATCGAAGACGGTCGTGCAGTTGGGGTACAACTAAAAACCGGACGCACC
ATCCGGGCTAAAAAAGCTGTCATTTCGAATGTCTCCGCTCTTGATGTCAG
CAAGTTGCTGCCGGATTGGAACACCGTTGAATACTATCAAGCTGAAGTTA
GCAGGCGTGAAATGTGTCCATCCTTCATGCACCTCCACATTGCCCTCGAA
TTAACTGAAGATATTCGTTCTCGTTTGCCTCAGGGCAATCTGGAGCCAAA
TTATGTCAGCGTAGAAGACTGGGATCTTGGTTTGGCACATCCTGATAATG
TGGTTTTGATAAGTGTGCCGTCCGTTCTGGATAAAAATGTATGTCCAGGT
GGTCACGCAGTTATTCATGCGTATACACCAGCCACAGAACCATATGAGAT
GTGGAGGGATTTGGAACCCGGTACATCTGAGTACGAAAAGTACAAGGAAG
AACGATCTCAGGTTTTGTGGAAAGCCGTTAACCGCATCTTTGGAATCGAT
ATTCGTCCAAAAGCGTACATAAAGCTTGTGGGTACGCCTAAAACGCACGC
TCGCTTTCTTCGTCGACGTAATGGCTCGTATGGTCCGAAAGTTGATGCAA
ACATGGGAAGTTTGGGTTTTCCATTTCCAGGCAGTGGTGATTTCCCGAAA
GACTTTTACTGCGTTGGTGATGGTGTGTTTCCAGGAGTGGGCGTTCCTGC
TGTAGCTGCAAGCGCATGGATTGTGGCGAACGGAATAGTTAATGTTCGAG
ATCAGTCAAAACTCTTGAGAAAAGTAGGATTATGA

Coding sequence (CDS) from alignment at ScGOVlb_3404:4690108..4691892+

>Gvermi12428.t1 ID=Gvermi12428.t1|Name=Gvermi12428.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=CDS|length=1785bp|location=Sequence derived from alignment at ScGOVlb_3404:4690108..4691892+ (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
ATGGAATCAGAGGCACCAAGGGTACCGCTACCTCCCGCGTTTTGCTCGTT
CACCGCAGCCGCAGTTATTAACAAACGAATATCATCAGGCAGACAGTCAG
AGGGGTTTTATAGACAACCACATGGGACGAAAGTCAGCCGTGCTAAGATT
CTAATCCGCAGCTCCTCTGCCGACGAAAGTTACGATGTCATTACAATCGG
CTCAGGACTGGGTGGTCTTTGCGCCTCGGCGTTACTTTCCACGTACAATC
TACGTACACTTACACTTGAATCTCACACAGAGCCCGGTGGAGCAGCTCAT
TCTTTTTCAAGAAGAACACCTTACGGTACAATAACATTCGAGTCAGGACC
ACATCTGTTCTCGGGTCTTCAGTTTCCATCTGACAACCCCATGTACCACG
TTTTGCGCGCAGTCGATGCAAAACTTGATGTCATCAGCTACGATGCGTGG
GGAGTTTTTCTTCCAAATTCTTACGTTCGAACGACACTTCGAGCTGGAGA
GCCGCTTTTTGAAGAACTGCTCGATGTAGCCGGAGGTCCAGCGGCGAAAG
CCGAAATGAGCAATCTCACTAAGGTTTTGCGTCCGATGGGGGAGGCTGCA
ACTATTTTGCCACCGGCAGCATTGAGGGCTTCAGATATTGTTGGCTCCCT
TAGAATCGCAGCTAGATATGCATTTTCTTTTCGTTCCATGTCACATATCT
CACGAATACCTCAACTCTCAAAACCGTTTTCAACAATTCTCGACAGCCAT
GTATCTGACAAGTTCGCTCGCGATTTTCTGAACCTTTTATGTTTCTTGCT
CGCCGGAGCAACGGCAGACCGGGTTCCAGTTGCTGAAGTAGCTTTCATGT
TTCGTGAATGGCTCGGTGATGATGCTGTTTTCGGTGCCCCAGTTCTACAG
AGACCACTAGGAGGTGCTTCTGCCATCGCAAAAGCATTGATTGAAGCCAT
AGAGAAGCGAGATGGCACAGTGCAAACAGGAGCTCACGTCAATCGCGTTA
TAATCGAAGACGGTCGTGCAGTTGGGGTACAACTAAAAACCGGACGCACC
ATCCGGGCTAAAAAAGCTGTCATTTCGAATGTCTCCGCTCTTGATGTCAG
CAAGTTGCTGCCGGATTGGAACACCGTTGAATACTATCAAGCTGAAGTTA
GCAGGCGTGAAATGTGTCCATCCTTCATGCACCTCCACATTGCCCTCGAA
TTAACTGAAGATATTCGTTCTCGTTTGCCTCAGGGCAATCTGGAGCCAAA
TTATGTCAGCGTAGAAGACTGGGATCTTGGTTTGGCACATCCTGATAATG
TGGTTTTGATAAGTGTGCCGTCCGTTCTGGATAAAAATGTATGTCCAGGT
GGTCACGCAGTTATTCATGCGTATACACCAGCCACAGAACCATATGAGAT
GTGGAGGGATTTGGAACCCGGTACATCTGAGTACGAAAAGTACAAGGAAG
AACGATCTCAGGTTTTGTGGAAAGCCGTTAACCGCATCTTTGGAATCGAT
ATTCGTCCAAAAGCGTACATAAAGCTTGTGGGTACGCCTAAAACGCACGC
TCGCTTTCTTCGTCGACGTAATGGCTCGTATGGTCCGAAAGTTGATGCAA
ACATGGGAAGTTTGGGTTTTCCATTTCCAGGCAGTGGTGATTTCCCGAAA
GACTTTTACTGCGTTGGTGATGGTGTGTTTCCAGGAGTGGGCGTTCCTGC
TGTAGCTGCAAGCGCATGGATTGTGGCGAACGGAATAGTTAATGTTCGAG
ATCAGTCAAAACTCTTGAGAAAAGTAGGATTATGA