Gvermi12330.t1 (mRNA) Gracilaria vermiculophylla HapMaleFtJ_2017 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGvermi12330.t1
Unique NameGvermi12330.t1
TypemRNA
OrganismGracilaria vermiculophylla HapMaleFtJ_2017 male (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
Sequence length477
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
ScGOVlb_3404contigScGOVlb_3404:4239334..4240764 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria vermiculophylla HapMaleFtJ_2017 male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog45157.CMQ233CT
Preferred namebem46
PFAMsHydrolase_4,Peptidase_S9
Max annot lvl2759|Eukaryota
KEGG koko:K06889
GOsGO:0000322,GO:0000323,GO:0000324,GO:0003674,GO:0003824,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005739,GO:0005773,GO:0005783,GO:0005886,GO:0007275,GO:0008150,GO:0012505,GO:0016020,GO:0016787,GO:0016788,GO:0019866,GO:0022622,GO:0031090,GO:0031967,GO:0031975,GO:0032501,GO:0032502,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0044422,GO:0044424,GO:0044444,GO:0044446,GO:0044464,GO:0048364,GO:0048731,GO:0048856,GO:0071944,GO:0099402
Evalue3.11e-90
EggNOG OGsCOG1073@1|root,KOG4391@2759|Eukaryota
Descriptionprotein depalmitoylation
COG categoryO
BRITEko00000
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Gvermi12330Gvermi12330Gracilaria vermiculophylla HapMaleFtJ_2017 malegeneScGOVlb_3404 4239334..4240764 -


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi12330.t1.stop1Gvermi12330.t1.stop1Gracilaria vermiculophylla HapMaleFtJ_2017 malestop_codonScGOVlb_3404 4239334..4239336 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi12330.t1.CDS1Gvermi12330.t1.CDS1Gracilaria vermiculophylla HapMaleFtJ_2017 maleCDSScGOVlb_3404 4239334..4240764 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi12330.t1.exon1Gvermi12330.t1.exon1Gracilaria vermiculophylla HapMaleFtJ_2017 maleexonScGOVlb_3404 4239334..4240764 -


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi12330.t1.start1Gvermi12330.t1.start1Gracilaria vermiculophylla HapMaleFtJ_2017 malestart_codonScGOVlb_3404 4240762..4240764 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi12330.t1Gvermi12330.t1Gracilaria vermiculophylla HapMaleFtJ_2017 malepolypeptideScGOVlb_3404 4239334..4240764 -


Sequences
The following sequences are available for this feature:

mRNA sequence

>Gvermi12330.t1 ID=Gvermi12330.t1|Name=Gvermi12330.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=477bp
MQRSAYAYIPSTCWRPRLHRSTFVVPTSHRHRPLSSVRAFQPCMSSDSKP
SSKAVSLPRLAVITTALSAVLLPFIPTKVGSAPLFVAQVTQTSEPSSAST
FARHTVSGRVVRVKNARSDRLAFTVSQSSLATVQSPVITKASPTSHVRKI
IPTAADTFLHKVLKLALLAGIVSFIITAATISVFWIIQDSLVYKPTKVWR
GNPGSYGMPYYDDVSHCTMDGVEIIGWFIKQPPESFRSARTLIYFHGTDK
NASFRLRKIVGIYEKCKCNILLLSYRGYGPSTGKPNERGVRIDAESAYEY
LKSRGDVDVGLGGNLWVYGESLGGAVAVYFCHKYQDCINALILENTFTSL
LDMIKLEFPILGIFRYLSRNRWQSKKRIKNIAIPLLFLSGLKDGYIPPAM
MKKMHTLATKSTLKEFVEFENGTHNRTWTAEGFYDSVARFMDRVDAQKGR
EIVRDASRVHTYEGKVDEGGRFAATA*
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spliced messenger RNA

>Gvermi12330.t1 ID=Gvermi12330.t1|Name=Gvermi12330.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=1431bp|location=Sequence derived from alignment at ScGOVlb_3404:4239334..4240764- (Gracilaria vermiculophylla HapMaleFtJ_2017 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGCAGCGATCCGCTTATGCGTACATACCATCCACTTGCTGGCGTCCGCG
ACTGCATCGGTCGACTTTTGTGGTTCCGACTAGCCACAGGCATCGGCCTC
TCAGCTCAGTTCGCGCTTTTCAACCATGCATGAGCTCAGATTCAAAACCA
TCATCGAAAGCAGTCTCGCTTCCGCGACTGGCCGTCATTACAACAGCGTT
AAGCGCCGTGCTACTGCCTTTCATTCCAACAAAAGTTGGGTCGGCTCCCC
TTTTCGTTGCACAAGTTACACAAACATCTGAACCAAGTTCAGCGTCGACT
TTTGCCAGGCACACTGTTTCGGGTCGCGTTGTGCGTGTGAAAAACGCCCG
GTCTGATAGACTGGCCTTCACCGTTTCGCAATCGTCCCTTGCCACTGTTC
AATCTCCCGTGATTACAAAGGCTTCTCCGACATCCCACGTGCGCAAAATT
ATTCCGACCGCCGCGGACACGTTTCTCCACAAGGTTTTAAAGCTTGCTCT
GTTGGCTGGGATCGTCAGCTTCATCATCACGGCGGCTACCATCTCCGTGT
TTTGGATCATCCAAGATTCTTTGGTGTACAAACCAACCAAGGTATGGCGT
GGAAACCCCGGTTCGTACGGAATGCCTTATTACGATGACGTGAGTCACTG
CACCATGGACGGGGTGGAAATTATTGGATGGTTCATTAAACAGCCGCCCG
AGAGTTTCCGCAGCGCTCGAACTCTCATTTACTTCCATGGCACTGACAAG
AACGCCAGTTTCAGGCTCAGGAAGATTGTTGGTATTTATGAGAAGTGCAA
ATGCAACATTCTGCTTCTTTCGTACAGAGGGTACGGCCCATCCACTGGGA
AGCCGAACGAGCGGGGAGTTCGCATTGATGCCGAAAGTGCCTATGAATAT
CTGAAGAGTCGCGGGGATGTTGATGTGGGGCTCGGGGGCAACTTGTGGGT
GTATGGAGAGTCTCTGGGAGGGGCGGTTGCTGTGTATTTCTGCCACAAAT
ACCAGGACTGCATAAATGCGCTGATTTTGGAGAACACGTTTACAAGTCTT
CTGGACATGATCAAGTTGGAGTTTCCGATTTTAGGTATTTTCAGATACCT
GAGTCGGAACCGATGGCAGAGCAAGAAAAGGATCAAAAACATTGCCATTC
CGCTGCTGTTCCTGAGCGGGCTGAAAGACGGATACATCCCGCCGGCTATG
ATGAAAAAGATGCACACGCTGGCAACCAAATCGACGTTGAAGGAATTTGT
GGAGTTTGAAAATGGAACTCACAACAGAACGTGGACGGCCGAAGGGTTTT
ACGACTCCGTGGCCAGGTTCATGGACCGGGTGGATGCACAAAAGGGGCGC
GAAATTGTTAGAGACGCCTCGCGTGTGCACACGTATGAAGGAAAGGTGGA
CGAAGGGGGGCGCTTCGCGGCGACGGCGTGA
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protein sequence of Gvermi12330.t1

>Gvermi12330.t1 ID=Gvermi12330.t1|Name=Gvermi12330.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=polypeptide|length=477bp
MQRSAYAYIPSTCWRPRLHRSTFVVPTSHRHRPLSSVRAFQPCMSSDSKP
SSKAVSLPRLAVITTALSAVLLPFIPTKVGSAPLFVAQVTQTSEPSSAST
FARHTVSGRVVRVKNARSDRLAFTVSQSSLATVQSPVITKASPTSHVRKI
IPTAADTFLHKVLKLALLAGIVSFIITAATISVFWIIQDSLVYKPTKVWR
GNPGSYGMPYYDDVSHCTMDGVEIIGWFIKQPPESFRSARTLIYFHGTDK
NASFRLRKIVGIYEKCKCNILLLSYRGYGPSTGKPNERGVRIDAESAYEY
LKSRGDVDVGLGGNLWVYGESLGGAVAVYFCHKYQDCINALILENTFTSL
LDMIKLEFPILGIFRYLSRNRWQSKKRIKNIAIPLLFLSGLKDGYIPPAM
MKKMHTLATKSTLKEFVEFENGTHNRTWTAEGFYDSVARFMDRVDAQKGR
EIVRDASRVHTYEGKVDEGGRFAATA*
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mRNA from alignment at ScGOVlb_3404:4239334..4240764-

Legend: polypeptideCDSexonstart_codonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Gvermi12330.t1 ID=Gvermi12330.t1|Name=Gvermi12330.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=1431bp|location=Sequence derived from alignment at ScGOVlb_3404:4239334..4240764- (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
ATGCAGCGATCCGCTTATGCGTACATACCATCCACTTGCTGGCGTCCGCG
ACTGCATCGGTCGACTTTTGTGGTTCCGACTAGCCACAGGCATCGGCCTC
TCAGCTCAGTTCGCGCTTTTCAACCATGCATGAGCTCAGATTCAAAACCA
TCATCGAAAGCAGTCTCGCTTCCGCGACTGGCCGTCATTACAACAGCGTT
AAGCGCCGTGCTACTGCCTTTCATTCCAACAAAAGTTGGGTCGGCTCCCC
TTTTCGTTGCACAAGTTACACAAACATCTGAACCAAGTTCAGCGTCGACT
TTTGCCAGGCACACTGTTTCGGGTCGCGTTGTGCGTGTGAAAAACGCCCG
GTCTGATAGACTGGCCTTCACCGTTTCGCAATCGTCCCTTGCCACTGTTC
AATCTCCCGTGATTACAAAGGCTTCTCCGACATCCCACGTGCGCAAAATT
ATTCCGACCGCCGCGGACACGTTTCTCCACAAGGTTTTAAAGCTTGCTCT
GTTGGCTGGGATCGTCAGCTTCATCATCACGGCGGCTACCATCTCCGTGT
TTTGGATCATCCAAGATTCTTTGGTGTACAAACCAACCAAGGTATGGCGT
GGAAACCCCGGTTCGTACGGAATGCCTTATTACGATGACGTGAGTCACTG
CACCATGGACGGGGTGGAAATTATTGGATGGTTCATTAAACAGCCGCCCG
AGAGTTTCCGCAGCGCTCGAACTCTCATTTACTTCCATGGCACTGACAAG
AACGCCAGTTTCAGGCTCAGGAAGATTGTTGGTATTTATGAGAAGTGCAA
ATGCAACATTCTGCTTCTTTCGTACAGAGGGTACGGCCCATCCACTGGGA
AGCCGAACGAGCGGGGAGTTCGCATTGATGCCGAAAGTGCCTATGAATAT
CTGAAGAGTCGCGGGGATGTTGATGTGGGGCTCGGGGGCAACTTGTGGGT
GTATGGAGAGTCTCTGGGAGGGGCGGTTGCTGTGTATTTCTGCCACAAAT
ACCAGGACTGCATAAATGCGCTGATTTTGGAGAACACGTTTACAAGTCTT
CTGGACATGATCAAGTTGGAGTTTCCGATTTTAGGTATTTTCAGATACCT
GAGTCGGAACCGATGGCAGAGCAAGAAAAGGATCAAAAACATTGCCATTC
CGCTGCTGTTCCTGAGCGGGCTGAAAGACGGATACATCCCGCCGGCTATG
ATGAAAAAGATGCACACGCTGGCAACCAAATCGACGTTGAAGGAATTTGT
GGAGTTTGAAAATGGAACTCACAACAGAACGTGGACGGCCGAAGGGTTTT
ACGACTCCGTGGCCAGGTTCATGGACCGGGTGGATGCACAAAAGGGGCGC
GAAATTGTTAGAGACGCCTCGCGTGTGCACACGTATGAAGGAAAGGTGGA
CGAAGGGGGGCGCTTCGCGGCGACGGCGTGA
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Coding sequence (CDS) from alignment at ScGOVlb_3404:4239334..4240764-

>Gvermi12330.t1 ID=Gvermi12330.t1|Name=Gvermi12330.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=CDS|length=1431bp|location=Sequence derived from alignment at ScGOVlb_3404:4239334..4240764- (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
ATGCAGCGATCCGCTTATGCGTACATACCATCCACTTGCTGGCGTCCGCG
ACTGCATCGGTCGACTTTTGTGGTTCCGACTAGCCACAGGCATCGGCCTC
TCAGCTCAGTTCGCGCTTTTCAACCATGCATGAGCTCAGATTCAAAACCA
TCATCGAAAGCAGTCTCGCTTCCGCGACTGGCCGTCATTACAACAGCGTT
AAGCGCCGTGCTACTGCCTTTCATTCCAACAAAAGTTGGGTCGGCTCCCC
TTTTCGTTGCACAAGTTACACAAACATCTGAACCAAGTTCAGCGTCGACT
TTTGCCAGGCACACTGTTTCGGGTCGCGTTGTGCGTGTGAAAAACGCCCG
GTCTGATAGACTGGCCTTCACCGTTTCGCAATCGTCCCTTGCCACTGTTC
AATCTCCCGTGATTACAAAGGCTTCTCCGACATCCCACGTGCGCAAAATT
ATTCCGACCGCCGCGGACACGTTTCTCCACAAGGTTTTAAAGCTTGCTCT
GTTGGCTGGGATCGTCAGCTTCATCATCACGGCGGCTACCATCTCCGTGT
TTTGGATCATCCAAGATTCTTTGGTGTACAAACCAACCAAGGTATGGCGT
GGAAACCCCGGTTCGTACGGAATGCCTTATTACGATGACGTGAGTCACTG
CACCATGGACGGGGTGGAAATTATTGGATGGTTCATTAAACAGCCGCCCG
AGAGTTTCCGCAGCGCTCGAACTCTCATTTACTTCCATGGCACTGACAAG
AACGCCAGTTTCAGGCTCAGGAAGATTGTTGGTATTTATGAGAAGTGCAA
ATGCAACATTCTGCTTCTTTCGTACAGAGGGTACGGCCCATCCACTGGGA
AGCCGAACGAGCGGGGAGTTCGCATTGATGCCGAAAGTGCCTATGAATAT
CTGAAGAGTCGCGGGGATGTTGATGTGGGGCTCGGGGGCAACTTGTGGGT
GTATGGAGAGTCTCTGGGAGGGGCGGTTGCTGTGTATTTCTGCCACAAAT
ACCAGGACTGCATAAATGCGCTGATTTTGGAGAACACGTTTACAAGTCTT
CTGGACATGATCAAGTTGGAGTTTCCGATTTTAGGTATTTTCAGATACCT
GAGTCGGAACCGATGGCAGAGCAAGAAAAGGATCAAAAACATTGCCATTC
CGCTGCTGTTCCTGAGCGGGCTGAAAGACGGATACATCCCGCCGGCTATG
ATGAAAAAGATGCACACGCTGGCAACCAAATCGACGTTGAAGGAATTTGT
GGAGTTTGAAAATGGAACTCACAACAGAACGTGGACGGCCGAAGGGTTTT
ACGACTCCGTGGCCAGGTTCATGGACCGGGTGGATGCACAAAAGGGGCGC
GAAATTGTTAGAGACGCCTCGCGTGTGCACACGTATGAAGGAAAGGTGGA
CGAAGGGGGGCGCTTCGCGGCGACGGCGTGA
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