Gvermi12189.t1 (mRNA) Gracilaria vermiculophylla HapMaleFtJ_2017 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGvermi12189.t1
Unique NameGvermi12189.t1
TypemRNA
OrganismGracilaria vermiculophylla HapMaleFtJ_2017 male (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
Sequence length233
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
ScGOVlb_3404contigScGOVlb_3404:3787278..3791371 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria vermiculophylla HapMaleFtJ_2017 male OGS1.02022-05-09
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Gvermi12189Gvermi12189Gracilaria vermiculophylla HapMaleFtJ_2017 malegeneScGOVlb_3404 3787278..3791371 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi12189.t1Gvermi12189.t1Gracilaria vermiculophylla HapMaleFtJ_2017 malepolypeptideScGOVlb_3404 3787278..3791371 -


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi12189.t1.stop1Gvermi12189.t1.stop1Gracilaria vermiculophylla HapMaleFtJ_2017 malestop_codonScGOVlb_3404 3787278..3787280 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi12189.t1.CDS1Gvermi12189.t1.CDS1Gracilaria vermiculophylla HapMaleFtJ_2017 maleCDSScGOVlb_3404 3787278..3787885 -
Gvermi12189.t1.CDS2Gvermi12189.t1.CDS2Gracilaria vermiculophylla HapMaleFtJ_2017 maleCDSScGOVlb_3404 3791178..3791207 -
Gvermi12189.t1.CDS3Gvermi12189.t1.CDS3Gracilaria vermiculophylla HapMaleFtJ_2017 maleCDSScGOVlb_3404 3791311..3791371 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi12189.t1.exon1Gvermi12189.t1.exon1Gracilaria vermiculophylla HapMaleFtJ_2017 maleexonScGOVlb_3404 3787278..3787885 -
Gvermi12189.t1.exon2Gvermi12189.t1.exon2Gracilaria vermiculophylla HapMaleFtJ_2017 maleexonScGOVlb_3404 3791178..3791207 -
Gvermi12189.t1.exon3Gvermi12189.t1.exon3Gracilaria vermiculophylla HapMaleFtJ_2017 maleexonScGOVlb_3404 3791311..3791371 -


The following intron feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi12189.t1.intron1Gvermi12189.t1.intron1Gracilaria vermiculophylla HapMaleFtJ_2017 maleintronScGOVlb_3404 3787886..3791177 -
Gvermi12189.t1.intron2Gvermi12189.t1.intron2Gracilaria vermiculophylla HapMaleFtJ_2017 maleintronScGOVlb_3404 3791208..3791310 -


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi12189.t1.start1Gvermi12189.t1.start1Gracilaria vermiculophylla HapMaleFtJ_2017 malestart_codonScGOVlb_3404 3791369..3791371 -


Sequences
The following sequences are available for this feature:

mRNA sequence

>Gvermi12189.t1 ID=Gvermi12189.t1|Name=Gvermi12189.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=233bp
MNIEVVNLHGTIKSEARKPKEKDVEHILFNYIATQFSLARDDPYKCIWHG
RGNHLVIDMKYIPPRGSWTRNGYGLEWKKDKPSGTDRPGSGQMCFSFRVP
KSGNYYFTGITSAPHPTDHNDMWVKLSSGIRLYRGKTHAFRYTTKKYIKA
YQNEGKDEVNNILSSVDHNPHYFVSENMPKNETHTVCISGRSSKFTVYKL
VFVRCWLGNGSCNRWDTWIKRSVKYLIESICN*
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spliced messenger RNA

>Gvermi12189.t1 ID=Gvermi12189.t1|Name=Gvermi12189.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=699bp|location=Sequence derived from alignment at ScGOVlb_3404:3787278..3791371- (Gracilaria vermiculophylla HapMaleFtJ_2017 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGAACATAGAAGTGGTTAATCTGCATGGGACTATTAAAAGTGAAGCTAG
GAAACCAAAAGAAAAGGACGTTGAACACATTCTCTTCAATTATATTGCAA
CACAGTTTTCACTAGCGCGCGATGATCCATATAAATGTATATGGCATGGA
AGAGGCAATCATCTCGTGATTGACATGAAGTACATTCCCCCTCGGGGGTC
ATGGACACGAAACGGTTATGGTTTGGAATGGAAGAAAGATAAGCCTTCAG
GGACGGACCGGCCTGGAAGCGGTCAAATGTGTTTTTCTTTCCGTGTTCCG
AAGTCTGGAAACTACTATTTTACCGGAATTACTTCTGCTCCGCACCCCAC
TGATCACAATGACATGTGGGTAAAGTTATCATCTGGCATCCGTCTGTACA
GAGGAAAGACACATGCATTCAGGTACACAACGAAGAAGTATATAAAAGCC
TACCAGAATGAGGGGAAAGACGAGGTGAATAACATTTTGTCATCAGTGGA
TCACAATCCGCATTACTTCGTATCAGAGAATATGCCCAAAAATGAAACGC
ACACGGTCTGTATTTCAGGTCGGAGTTCGAAGTTTACGGTCTATAAACTT
GTTTTCGTGAGATGTTGGTTGGGAAATGGATCCTGCAATAGATGGGATAC
TTGGATAAAACGGTCTGTGAAGTATCTGATAGAGTCCATCTGTAACTAA
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protein sequence of Gvermi12189.t1

>Gvermi12189.t1 ID=Gvermi12189.t1|Name=Gvermi12189.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=polypeptide|length=233bp
MNIEVVNLHGTIKSEARKPKEKDVEHILFNYIATQFSLARDDPYKCIWHG
RGNHLVIDMKYIPPRGSWTRNGYGLEWKKDKPSGTDRPGSGQMCFSFRVP
KSGNYYFTGITSAPHPTDHNDMWVKLSSGIRLYRGKTHAFRYTTKKYIKA
YQNEGKDEVNNILSSVDHNPHYFVSENMPKNETHTVCISGRSSKFTVYKL
VFVRCWLGNGSCNRWDTWIKRSVKYLIESICN*
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mRNA from alignment at ScGOVlb_3404:3787278..3791371-

Legend: polypeptideCDSexonstart_codonintronstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Gvermi12189.t1 ID=Gvermi12189.t1|Name=Gvermi12189.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=4094bp|location=Sequence derived from alignment at ScGOVlb_3404:3787278..3791371- (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
ATGAACATAGAAGTGGTTAATCTGCATGGGACTATTAAAAGTGAAGCTAG
GAAACCAAAAGGTATGGTGTCATAATTCGCAACTGGTCACCTAGGCCCTC
GACATCCAGAAACTTTGTGTTTCGAACATTAACTAACGCAGAGTTTGTGT
GGAACTGCACCCAGAAAAGGACGTTGAACACATTCTCTTCAATTGTGCGT
TTACGAGTATCCCGCGGAGACGAGCCGTCATCAGGGCTACGGTAGGGGAG
AAACTCCATTAAAAGATATAATTGATAAATGGCCACTTCGGATACTGGCC
TTCGTGGAGCGGGAGTAGTTCTTGTGGAGGTACCCCTTACCCTTCCTGAT
CAGAGAAAATATGAACTTAAGGTAAAAATGAACTAGCAGGACGTTACCAA
CCCAACTCAGTTGTCAAATTCTTGCGTTCAAGAATGCAACAAATTAAATA
ATAATGACAGTTAGGGGCGTTAAAAGGGTTGTAACTTTTTAGGACTGCAT
GTAACCTTTTGCTATGCGTTTTGAGATCGCTAATCAAGTTAAAGACCATC
CAACTTCAGGAGAGCTGCATTCTGTGCAGACGAAAAAACAATCTGTTGAC
TTAAAAGGAAAAGGATTTGGACAAGGTAATACCTTACATTGACGTTTTCG
CGCAAAACAACTTAATCCAAGCGTGAGATTGATATGCAATTGGTGTTTTC
TTAACGTTGCAACGGCAAGCTGCACATTTTTCAGAAAACAAAACTGCCAA
AGAACCAGCAGAGACTTCTTCAAACACGATATTCATTGCCAAAACGTTCT
CTGATGTTTACACAACATAAGATGAGTGTTTGTTTTACGAAATACAGAGA
TGGAAAGAAATGACAACCCGCGAGGCAAGACGCTAACCAGAAACAGTTGC
TACTGCCAGAGCTCTTGAGCGAGTTGTACCTTTTCATACAGTTTCGAGAA
TCACACCATTGGGGAACAAGACGACATGCTGTGCGCACATCTAAAAACCG
TACCAAAACTGGGGTGCAAATTAGATTTTACAATTTTTTGGAAACCTCAT
GCTGTACTGTAAAGTACAAGGCCAGAAAAGACAATGAGCCTGCTCGATAG
GCTCGCCAAGCAATCCGAAGGGAGACTGAAAGCGAGTCAAGATAGGCAAA
AGCGCGATTGCATCTCCAGGCATTGTAGTTTATATCATTCACTAATGAAT
CAAGACTTGAAGACCAGTCTGTGAGAAACGTACATATATTGGGGAATTTC
TGGCAAAGCATGTGCACTTTACCCGCTCAGAATGTGTGAAAATTGAGCGA
AATGTGAAGGACCGTTGCTGTGTTTCGCTCTTCAAGCTTCGCATCTAAAC
GCAGGTTGATACTGTAGTCTTATCCACAAAGTTCGTAGACACTGGCATGT
TCCAAGCTGCTCATGGGCACGTCTCCAATGTCACCCAACGCAAATTGAGG
ATATCTGGAGTACTGGGATACTGCTTACATCGTACTCCTATCATCGGTTA
CGAACCATTGCCGGACATCCGCATCTTCACGCACATTCACAGGTTGTTGC
GCCATTGTCTACGTCAGGCTTCAAGCTTTACTGCCGCCAAAAATGTTACT
GAAACTACAAGCGCGCCGCCGTGGGGGTGCTTTCACAGCTACAAGACCGA
GAGCATTTTTGGCTCAAATTCTTAGTAGAACGTTCGCCAGAGGTAGATGG
TTAGCAATTCCTTTATCTCTAATAGCCAGCGAACGATACCCCTTCAGCAT
TATCTCCAATAGTGTTTACGTAAAAAAAATAAGTGGTCTGGGTAATTGTG
ACTTTTGGAGCGAGCAGATCCCTGACTTTACGACTTGCTGCGTTTCCTGC
TGCCCGACCTGACAAATCTCGCTTCCGCAGAGAGCATACACTCAGAAAGA
GAGGATTGAAAAGTGCAAAAGGAATGGGGATAACCCTGTAACCTTCTTTA
GAAAATCTCAAGAAATTCCTTGTGAGGTCGAAATCCAAAGTCTGCTGAAC
GAGATGGTTGGAACAGAATTCTTTAGAGGCATGATGGTAGTTGTTATCAA
GGATCTGTGGGTGCCGAAAGGGGCGAGGAAATGAAAAAAGCGGTGATGAC
AATGGACGTCAATTGCAACATTTGTTGCTGTTCCTTTGCTAACTACCAAG
AAAAGACAGAGATTAAGAGACGTCATGGAACCAATAAGACGAACACTGTG
AAGTATCGTGGCTATCAGAAAAGAGTGAAGTATCGTTTACGACTACGCAG
AGCGTATCGGGTCTGTGATACTGTAGACTGATGATATCGCTTAGGAGTGG
GCCTGTGATACTGTAGGCAAAGCGTATTGCTTGGGACGGATCTGGATGCA
ACGGCGTTGCGAGGCGTTGCGAGAAGGCTGAAGCAAGCATAAATACCCCG
GGAGGAATGCTGTGGTTTCCGATTGTGAGAGGCATCTACGAATTCGCCAT
TTACTTCCATTATCAGTAAACCAGTTTGCTACATCCAAGATGAGGTTACG
CTCATGGTTTGATCTTGAAGTGCAGCAGCGTTACGCTCAGCGGTAAGGAC
GCCTATCGCCGAAAAGGCAGGTACAGTACAGTACGCATCGTTTCTGCGAT
GAAAAAGGGAAGGGCACGGCTCATCTCGCGCAGCGCTGTTCGCTGACTCA
AAAAAGCGAACAAAAATGGAAAACATTGAGAGAGGATCGTAATGTACCAT
TAGAATAAAGGGCTGCGCGGCTCACGGTCAACCCATGAGCATTTCTGATA
TCGCCCGTACGTAACGTCAATTTCCCGAGTCAAACAATCACACCCACACG
TAAAATGGCTTGAAGCCGAAACGAGCATGCTGCAAGCTAATGGCTTGAAT
TTCCTTTCTTGTTGCTGGTCACTGGTCAATTGCTCTTGAATGATGGGGCG
GAACGTGGTGTTTTTTTCCGCTGGAAGCCTCGGATGAGAAGGCTGGAAGA
GGCGGAATTCTATTGGTTTGCTCAGTAACGGTCTTTGGTCGTCGCTGAAA
ATCACAAACCTTGCTCAGTCGCTATTGAACTCAATCCATGCCATAAGCCA
GCGCTGCCAGGGTCGTCGGGATGCGACACCTCTTGTCTGCAAACGAGGTG
GAGCATGAGGCAAACAGACAAAGCGATGATCGTCAAACCGATGAAGGCTA
TGTTGTTTTTCCTTCTTGTGTTTCTTTGGATTCCGAATGCTCTAGCATGT
GAAAATGGTACAAGATTCAAAGCGGCAGCGAAGTGTGTGGCGCTGCATAA
AAGTTGCGGTGCAGAGCTCTCTAAGTGTACTTTGCATTGCAAACCAAATC
TCTACGTGGCTCGACAGCCGCTGAGTTGCCGTGATGCCGCATGCAAGTAT
TGTTCATGGCCCTCGAGTCAATTGGATCAAGCATGCTCTAGTTGGGCAAT
CAGACACTGGTGTGCAGCCTTCTTTCGTTCACGCCGACTTCATTCTCCTA
CACCTACACCTACACCTTCTCCTTCTCCCTCTCCAGATATTGCAACACAG
TTTTCACTAGCGCGCGATGATCCATATAAATGTATATGGCATGGAAGAGG
CAATCATCTCGTGATTGACATGAAGTACATTCCCCCTCGGGGGTCATGGA
CACGAAACGGTTATGGTTTGGAATGGAAGAAAGATAAGCCTTCAGGGACG
GACCGGCCTGGAAGCGGTCAAATGTGTTTTTCTTTCCGTGTTCCGAAGTC
TGGAAACTACTATTTTACCGGAATTACTTCTGCTCCGCACCCCACTGATC
ACAATGACATGTGGGTAAAGTTATCATCTGGCATCCGTCTGTACAGAGGA
AAGACACATGCATTCAGGTACACAACGAAGAAGTATATAAAAGCCTACCA
GAATGAGGGGAAAGACGAGGTGAATAACATTTTGTCATCAGTGGATCACA
ATCCGCATTACTTCGTATCAGAGAATATGCCCAAAAATGAAACGCACACG
GTCTGTATTTCAGGTCGGAGTTCGAAGTTTACGGTCTATAAACTTGTTTT
CGTGAGATGTTGGTTGGGAAATGGATCCTGCAATAGATGGGATACTTGGA
TAAAACGGTCTGTGAAGTATCTGATAGAGTCCATCTGTAACTAA
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Coding sequence (CDS) from alignment at ScGOVlb_3404:3787278..3791371-

>Gvermi12189.t1 ID=Gvermi12189.t1|Name=Gvermi12189.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=CDS|length=699bp|location=Sequence derived from alignment at ScGOVlb_3404:3787278..3791371- (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
ATGAACATAGAAGTGGTTAATCTGCATGGGACTATTAAAAGTGAAGCTAG
GAAACCAAAAGAAAAGGACGTTGAACACATTCTCTTCAATTATATTGCAA
CACAGTTTTCACTAGCGCGCGATGATCCATATAAATGTATATGGCATGGA
AGAGGCAATCATCTCGTGATTGACATGAAGTACATTCCCCCTCGGGGGTC
ATGGACACGAAACGGTTATGGTTTGGAATGGAAGAAAGATAAGCCTTCAG
GGACGGACCGGCCTGGAAGCGGTCAAATGTGTTTTTCTTTCCGTGTTCCG
AAGTCTGGAAACTACTATTTTACCGGAATTACTTCTGCTCCGCACCCCAC
TGATCACAATGACATGTGGGTAAAGTTATCATCTGGCATCCGTCTGTACA
GAGGAAAGACACATGCATTCAGGTACACAACGAAGAAGTATATAAAAGCC
TACCAGAATGAGGGGAAAGACGAGGTGAATAACATTTTGTCATCAGTGGA
TCACAATCCGCATTACTTCGTATCAGAGAATATGCCCAAAAATGAAACGC
ACACGGTCTGTATTTCAGGTCGGAGTTCGAAGTTTACGGTCTATAAACTT
GTTTTCGTGAGATGTTGGTTGGGAAATGGATCCTGCAATAGATGGGATAC
TTGGATAAAACGGTCTGTGAAGTATCTGATAGAGTCCATCTGTAACTAA
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