Gvermi12372.t1 (mRNA) Gracilaria vermiculophylla HapMaleFtJ_2017 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGvermi12372.t1
Unique NameGvermi12372.t1
TypemRNA
OrganismGracilaria vermiculophylla HapMaleFtJ_2017 male (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
Sequence length114
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
ScGOVlb_3404contigScGOVlb_3404:4393419..4393760 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria vermiculophylla HapMaleFtJ_2017 male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog29730.Gorai.008G061400.1
PFAMsRhodanese
Max annot lvl35493|Streptophyta
Evalue5.76e-17
EggNOG OGsCOG0607@1|root,KOG1530@2759|Eukaryota,37UIG@33090|Viridiplantae,3GJMQ@35493|Streptophyta
DescriptionThiosulfate sulfurtransferase 16
COG categoryP
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Gvermi12372Gvermi12372Gracilaria vermiculophylla HapMaleFtJ_2017 malegeneScGOVlb_3404 4393419..4393760 +


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi12372.t1.start1Gvermi12372.t1.start1Gracilaria vermiculophylla HapMaleFtJ_2017 malestart_codonScGOVlb_3404 4393419..4393421 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi12372.t1.CDS1Gvermi12372.t1.CDS1Gracilaria vermiculophylla HapMaleFtJ_2017 maleCDSScGOVlb_3404 4393419..4393760 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi12372.t1.exon1Gvermi12372.t1.exon1Gracilaria vermiculophylla HapMaleFtJ_2017 maleexonScGOVlb_3404 4393419..4393760 +


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi12372.t1.stop1Gvermi12372.t1.stop1Gracilaria vermiculophylla HapMaleFtJ_2017 malestop_codonScGOVlb_3404 4393758..4393760 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi12372.t1Gvermi12372.t1Gracilaria vermiculophylla HapMaleFtJ_2017 malepolypeptideScGOVlb_3404 4393419..4393760 +


Sequences
The following sequences are available for this feature:

mRNA sequence

>Gvermi12372.t1 ID=Gvermi12372.t1|Name=Gvermi12372.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=114bp
MVTKLSPHAANEKLSQSSAIYVDVRTPAEFAAGHIPRALNVSFTTPDMKP
LPSFVDDFRAAVGDATEIIVGCKSGKRSTAAIAKLNDAGIQGLMELEGGF
NSWESDSTLPVEK*
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spliced messenger RNA

>Gvermi12372.t1 ID=Gvermi12372.t1|Name=Gvermi12372.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=342bp|location=Sequence derived from alignment at ScGOVlb_3404:4393419..4393760+ (Gracilaria vermiculophylla HapMaleFtJ_2017 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGGTGACCAAGCTCTCTCCGCACGCTGCCAATGAAAAGTTAAGCCAATC
ATCTGCAATCTACGTCGACGTACGCACGCCCGCTGAGTTTGCCGCCGGAC
ACATTCCACGTGCCCTCAATGTATCGTTCACCACTCCCGATATGAAACCA
CTTCCTTCCTTTGTTGACGATTTCCGTGCTGCTGTCGGCGATGCCACCGA
GATCATCGTCGGATGCAAAAGCGGCAAAAGGAGCACTGCTGCCATCGCCA
AGCTTAACGACGCTGGTATTCAGGGGCTCATGGAGCTTGAAGGCGGTTTT
AACAGTTGGGAGAGCGATTCCACCCTTCCAGTTGAAAAGTAA
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protein sequence of Gvermi12372.t1

>Gvermi12372.t1 ID=Gvermi12372.t1|Name=Gvermi12372.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=polypeptide|length=114bp
MVTKLSPHAANEKLSQSSAIYVDVRTPAEFAAGHIPRALNVSFTTPDMKP
LPSFVDDFRAAVGDATEIIVGCKSGKRSTAAIAKLNDAGIQGLMELEGGF
NSWESDSTLPVEK*
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mRNA from alignment at ScGOVlb_3404:4393419..4393760+

Legend: start_codonpolypeptideCDSexonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Gvermi12372.t1 ID=Gvermi12372.t1|Name=Gvermi12372.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=342bp|location=Sequence derived from alignment at ScGOVlb_3404:4393419..4393760+ (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
ATGGTGACCAAGCTCTCTCCGCACGCTGCCAATGAAAAGTTAAGCCAATC
ATCTGCAATCTACGTCGACGTACGCACGCCCGCTGAGTTTGCCGCCGGAC
ACATTCCACGTGCCCTCAATGTATCGTTCACCACTCCCGATATGAAACCA
CTTCCTTCCTTTGTTGACGATTTCCGTGCTGCTGTCGGCGATGCCACCGA
GATCATCGTCGGATGCAAAAGCGGCAAAAGGAGCACTGCTGCCATCGCCA
AGCTTAACGACGCTGGTATTCAGGGGCTCATGGAGCTTGAAGGCGGTTTT
AACAGTTGGGAGAGCGATTCCACCCTTCCAGTTGAAAAGTAA
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Coding sequence (CDS) from alignment at ScGOVlb_3404:4393419..4393760+

>Gvermi12372.t1 ID=Gvermi12372.t1|Name=Gvermi12372.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=CDS|length=342bp|location=Sequence derived from alignment at ScGOVlb_3404:4393419..4393760+ (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
ATGGTGACCAAGCTCTCTCCGCACGCTGCCAATGAAAAGTTAAGCCAATC
ATCTGCAATCTACGTCGACGTACGCACGCCCGCTGAGTTTGCCGCCGGAC
ACATTCCACGTGCCCTCAATGTATCGTTCACCACTCCCGATATGAAACCA
CTTCCTTCCTTTGTTGACGATTTCCGTGCTGCTGTCGGCGATGCCACCGA
GATCATCGTCGGATGCAAAAGCGGCAAAAGGAGCACTGCTGCCATCGCCA
AGCTTAACGACGCTGGTATTCAGGGGCTCATGGAGCTTGAAGGCGGTTTT
AACAGTTGGGAGAGCGATTCCACCCTTCCAGTTGAAAAGTAA
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