Gvermi12195.t1 (mRNA) Gracilaria vermiculophylla HapMaleFtJ_2017 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGvermi12195.t1
Unique NameGvermi12195.t1
TypemRNA
OrganismGracilaria vermiculophylla HapMaleFtJ_2017 male (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
Sequence length354
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
ScGOVlb_3404contigScGOVlb_3404:3804341..3805619 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria vermiculophylla HapMaleFtJ_2017 male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog248742.XP_005649975.1
PFAMsPkinase
Max annot lvl3041|Chlorophyta
KEGG koko:K03097
KEGG Pathwayko03008,ko04064,ko04137,ko04139,ko04310,ko04520,ko04712,ko05162,ko05168,ko05169,map03008,map04064,map04137,map04139,map04310,map04520,map04712,map05162,map05168,map05169
Evalue4.31e-179
EggNOG OGsKOG0668@1|root,KOG0668@2759|Eukaryota,37QV3@33090|Viridiplantae,34JBV@3041|Chlorophyta
EC2.7.11.1
DescriptionBelongs to the protein kinase superfamily
COG categoryDKT
BRITEko00000,ko00001,ko01000,ko01001,ko03009
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Gvermi12195Gvermi12195Gracilaria vermiculophylla HapMaleFtJ_2017 malegeneScGOVlb_3404 3804341..3805619 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi12195.t1Gvermi12195.t1Gracilaria vermiculophylla HapMaleFtJ_2017 malepolypeptideScGOVlb_3404 3804341..3805619 +


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi12195.t1.start1Gvermi12195.t1.start1Gracilaria vermiculophylla HapMaleFtJ_2017 malestart_codonScGOVlb_3404 3804341..3804343 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi12195.t1.CDS1Gvermi12195.t1.CDS1Gracilaria vermiculophylla HapMaleFtJ_2017 maleCDSScGOVlb_3404 3804341..3804426 +
Gvermi12195.t1.CDS2Gvermi12195.t1.CDS2Gracilaria vermiculophylla HapMaleFtJ_2017 maleCDSScGOVlb_3404 3804644..3805619 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi12195.t1.exon1Gvermi12195.t1.exon1Gracilaria vermiculophylla HapMaleFtJ_2017 maleexonScGOVlb_3404 3804341..3804426 +
Gvermi12195.t1.exon2Gvermi12195.t1.exon2Gracilaria vermiculophylla HapMaleFtJ_2017 maleexonScGOVlb_3404 3804644..3805619 +


The following intron feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi12195.t1.intron1Gvermi12195.t1.intron1Gracilaria vermiculophylla HapMaleFtJ_2017 maleintronScGOVlb_3404 3804427..3804643 +


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi12195.t1.stop1Gvermi12195.t1.stop1Gracilaria vermiculophylla HapMaleFtJ_2017 malestop_codonScGOVlb_3404 3805617..3805619 +


Sequences
The following sequences are available for this feature:

mRNA sequence

>Gvermi12195.t1 ID=Gvermi12195.t1|Name=Gvermi12195.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=354bp
LSVATVYSDVNVRRSPDYWDYDNLQVRWGNQDDYEVVRKVGRGKYSDVFE
GVNVLKNEKCVIKILKPVKKKKIKREIKILQSLCGGTNIVQLKDICRDPH
SKVPSLIFEYINNQDFKTLFPKFTSADVRYYIYEVLKALEYAHSNGVMHR
DVKPHNIVVDHENKRLRLIDWGLAEFYFPHKEYNVRVASRYFKGPELLVD
LQDYDYSLDIWSLGCMFAGMIFRKEPFFHGHDNQDQLVKIAKVLGTRDLQ
DYLTKYGLQLDENFTAMIGSHQRKSWESFIRDENRHLATADALDLLSHML
VYDHQKRITAKEAMAHHFFASVRQAEAKARELEKAGNGTAEIGSGSDAMS
IVS*
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spliced messenger RNA

>Gvermi12195.t1 ID=Gvermi12195.t1|Name=Gvermi12195.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=1062bp|location=Sequence derived from alignment at ScGOVlb_3404:3804341..3805619+ (Gracilaria vermiculophylla HapMaleFtJ_2017 male)|Notes=Excludes all bases but those of type(s): exon.  
TTGAGCGTCGCCACCGTCTACAGCGATGTCAACGTCCGACGTTCACCAGA
CTACTGGGATTACGACAATCTACAAGTTCGGTGGGGAAATCAAGATGACT
ACGAAGTCGTACGAAAAGTAGGCCGTGGAAAGTACTCGGACGTGTTTGAA
GGTGTCAACGTTCTCAAGAATGAGAAATGTGTAATAAAAATTCTCAAACC
TGTCAAGAAGAAGAAGATAAAGCGTGAGATAAAAATCCTACAAAGCCTTT
GTGGAGGCACAAATATCGTCCAGTTGAAGGATATTTGCCGGGATCCGCAT
TCAAAAGTACCTTCTCTCATCTTCGAGTACATTAACAACCAGGACTTCAA
GACATTATTCCCTAAATTTACTTCCGCTGATGTGCGCTACTATATCTATG
AAGTACTCAAAGCATTGGAATATGCGCACTCAAATGGAGTGATGCACCGC
GATGTGAAACCGCACAATATCGTGGTAGACCATGAAAACAAGAGGCTGCG
TCTAATTGACTGGGGTCTCGCTGAATTCTACTTCCCGCACAAAGAGTACA
ATGTGCGGGTTGCATCCCGGTACTTCAAAGGCCCAGAGTTACTGGTGGAT
TTGCAAGACTATGATTATTCTCTGGACATATGGTCCCTTGGATGCATGTT
TGCAGGAATGATCTTCCGAAAAGAACCTTTCTTTCACGGTCACGACAATC
AAGACCAGCTGGTGAAGATTGCAAAGGTTCTGGGCACTAGAGATCTACAG
GATTATCTTACCAAGTATGGGTTACAACTAGACGAGAACTTCACAGCCAT
GATAGGCTCTCATCAGAGAAAGTCGTGGGAGAGCTTTATCAGAGACGAAA
ACCGGCATTTAGCAACTGCGGACGCACTTGATTTGCTCAGTCATATGTTA
GTATATGACCATCAGAAACGAATCACCGCAAAGGAAGCAATGGCGCATCA
TTTCTTTGCATCTGTTCGGCAAGCAGAAGCGAAGGCTCGAGAGCTTGAAA
AAGCTGGGAATGGCACCGCTGAAATTGGATCGGGGAGTGATGCCATGAGC
ATAGTTTCGTAG
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protein sequence of Gvermi12195.t1

>Gvermi12195.t1 ID=Gvermi12195.t1|Name=Gvermi12195.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=polypeptide|length=354bp
LSVATVYSDVNVRRSPDYWDYDNLQVRWGNQDDYEVVRKVGRGKYSDVFE
GVNVLKNEKCVIKILKPVKKKKIKREIKILQSLCGGTNIVQLKDICRDPH
SKVPSLIFEYINNQDFKTLFPKFTSADVRYYIYEVLKALEYAHSNGVMHR
DVKPHNIVVDHENKRLRLIDWGLAEFYFPHKEYNVRVASRYFKGPELLVD
LQDYDYSLDIWSLGCMFAGMIFRKEPFFHGHDNQDQLVKIAKVLGTRDLQ
DYLTKYGLQLDENFTAMIGSHQRKSWESFIRDENRHLATADALDLLSHML
VYDHQKRITAKEAMAHHFFASVRQAEAKARELEKAGNGTAEIGSGSDAMS
IVS*
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mRNA from alignment at ScGOVlb_3404:3804341..3805619+

Legend: polypeptidestart_codonCDSexonintronstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Gvermi12195.t1 ID=Gvermi12195.t1|Name=Gvermi12195.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=1279bp|location=Sequence derived from alignment at ScGOVlb_3404:3804341..3805619+ (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
TTGAGCGTCGCCACCGTCTACAGCGATGTCAACGTCCGACGTTCACCAGA
CTACTGGGATTACGACAATCTACAAGTTCGGTGGGGGTAAGTTGTACGAA
TTTCCCATATCTCAATCAATTCGAAACCTACGCGCAGCGACCCTAGAAAA
TTCTCATCCGCTTCGATGGTATTTTTCGACATTTTGCCGCTGAAGCCAAG
CAGTTTTCGTTGTGTGTAGCCATACTGAATACTAACTACCGATGTCTGTT
TGCACGTTGTTCCAATTTTATGCGAACTTTTTGTTTCTTTCAATCGTTTC
CAGAAATCAAGATGACTACGAAGTCGTACGAAAAGTAGGCCGTGGAAAGT
ACTCGGACGTGTTTGAAGGTGTCAACGTTCTCAAGAATGAGAAATGTGTA
ATAAAAATTCTCAAACCTGTCAAGAAGAAGAAGATAAAGCGTGAGATAAA
AATCCTACAAAGCCTTTGTGGAGGCACAAATATCGTCCAGTTGAAGGATA
TTTGCCGGGATCCGCATTCAAAAGTACCTTCTCTCATCTTCGAGTACATT
AACAACCAGGACTTCAAGACATTATTCCCTAAATTTACTTCCGCTGATGT
GCGCTACTATATCTATGAAGTACTCAAAGCATTGGAATATGCGCACTCAA
ATGGAGTGATGCACCGCGATGTGAAACCGCACAATATCGTGGTAGACCAT
GAAAACAAGAGGCTGCGTCTAATTGACTGGGGTCTCGCTGAATTCTACTT
CCCGCACAAAGAGTACAATGTGCGGGTTGCATCCCGGTACTTCAAAGGCC
CAGAGTTACTGGTGGATTTGCAAGACTATGATTATTCTCTGGACATATGG
TCCCTTGGATGCATGTTTGCAGGAATGATCTTCCGAAAAGAACCTTTCTT
TCACGGTCACGACAATCAAGACCAGCTGGTGAAGATTGCAAAGGTTCTGG
GCACTAGAGATCTACAGGATTATCTTACCAAGTATGGGTTACAACTAGAC
GAGAACTTCACAGCCATGATAGGCTCTCATCAGAGAAAGTCGTGGGAGAG
CTTTATCAGAGACGAAAACCGGCATTTAGCAACTGCGGACGCACTTGATT
TGCTCAGTCATATGTTAGTATATGACCATCAGAAACGAATCACCGCAAAG
GAAGCAATGGCGCATCATTTCTTTGCATCTGTTCGGCAAGCAGAAGCGAA
GGCTCGAGAGCTTGAAAAAGCTGGGAATGGCACCGCTGAAATTGGATCGG
GGAGTGATGCCATGAGCATAGTTTCGTAG
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Coding sequence (CDS) from alignment at ScGOVlb_3404:3804341..3805619+

>Gvermi12195.t1 ID=Gvermi12195.t1|Name=Gvermi12195.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=CDS|length=1062bp|location=Sequence derived from alignment at ScGOVlb_3404:3804341..3805619+ (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
TTGAGCGTCGCCACCGTCTACAGCGATGTCAACGTCCGACGTTCACCAGA
CTACTGGGATTACGACAATCTACAAGTTCGGTGGGGAAATCAAGATGACT
ACGAAGTCGTACGAAAAGTAGGCCGTGGAAAGTACTCGGACGTGTTTGAA
GGTGTCAACGTTCTCAAGAATGAGAAATGTGTAATAAAAATTCTCAAACC
TGTCAAGAAGAAGAAGATAAAGCGTGAGATAAAAATCCTACAAAGCCTTT
GTGGAGGCACAAATATCGTCCAGTTGAAGGATATTTGCCGGGATCCGCAT
TCAAAAGTACCTTCTCTCATCTTCGAGTACATTAACAACCAGGACTTCAA
GACATTATTCCCTAAATTTACTTCCGCTGATGTGCGCTACTATATCTATG
AAGTACTCAAAGCATTGGAATATGCGCACTCAAATGGAGTGATGCACCGC
GATGTGAAACCGCACAATATCGTGGTAGACCATGAAAACAAGAGGCTGCG
TCTAATTGACTGGGGTCTCGCTGAATTCTACTTCCCGCACAAAGAGTACA
ATGTGCGGGTTGCATCCCGGTACTTCAAAGGCCCAGAGTTACTGGTGGAT
TTGCAAGACTATGATTATTCTCTGGACATATGGTCCCTTGGATGCATGTT
TGCAGGAATGATCTTCCGAAAAGAACCTTTCTTTCACGGTCACGACAATC
AAGACCAGCTGGTGAAGATTGCAAAGGTTCTGGGCACTAGAGATCTACAG
GATTATCTTACCAAGTATGGGTTACAACTAGACGAGAACTTCACAGCCAT
GATAGGCTCTCATCAGAGAAAGTCGTGGGAGAGCTTTATCAGAGACGAAA
ACCGGCATTTAGCAACTGCGGACGCACTTGATTTGCTCAGTCATATGTTA
GTATATGACCATCAGAAACGAATCACCGCAAAGGAAGCAATGGCGCATCA
TTTCTTTGCATCTGTTCGGCAAGCAGAAGCGAAGGCTCGAGAGCTTGAAA
AAGCTGGGAATGGCACCGCTGAAATTGGATCGGGGAGTGATGCCATGAGC
ATAGTTTCGTAG
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