Gvermi12401.t1 (mRNA) Gracilaria vermiculophylla HapMaleFtJ_2017 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGvermi12401.t1
Unique NameGvermi12401.t1
TypemRNA
OrganismGracilaria vermiculophylla HapMaleFtJ_2017 male (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
Sequence length414
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
ScGOVlb_3404contigScGOVlb_3404:4564228..4565469 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria vermiculophylla HapMaleFtJ_2017 male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog529818.AMSG_01875T0
PFAMsAminotran_1_2
Max annot lvl2759|Eukaryota
Evalue1.57e-139
EggNOG OGsCOG0436@1|root,KOG0257@2759|Eukaryota
Descriptiontransferase activity, transferring nitrogenous groups
COG categoryE
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Gvermi12401Gvermi12401Gracilaria vermiculophylla HapMaleFtJ_2017 malegeneScGOVlb_3404 4564228..4565469 -


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi12401.t1.stop1Gvermi12401.t1.stop1Gracilaria vermiculophylla HapMaleFtJ_2017 malestop_codonScGOVlb_3404 4564228..4564230 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi12401.t1.CDS1Gvermi12401.t1.CDS1Gracilaria vermiculophylla HapMaleFtJ_2017 maleCDSScGOVlb_3404 4564228..4565469 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi12401.t1.exon1Gvermi12401.t1.exon1Gracilaria vermiculophylla HapMaleFtJ_2017 maleexonScGOVlb_3404 4564228..4565469 -


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi12401.t1.start1Gvermi12401.t1.start1Gracilaria vermiculophylla HapMaleFtJ_2017 malestart_codonScGOVlb_3404 4565467..4565469 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi12401.t1Gvermi12401.t1Gracilaria vermiculophylla HapMaleFtJ_2017 malepolypeptideScGOVlb_3404 4564228..4565469 -


Sequences
The following sequences are available for this feature:

mRNA sequence

>Gvermi12401.t1 ID=Gvermi12401.t1|Name=Gvermi12401.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=414bp
MGSVANYRDPLADRLGRLGTETAYAVALEAGQIKATGKTVYPFHIGDLNF
RTPKVVVDACKQALDDGFTGYCPAAGIPSLRAALADHYNQVFGLEYSASN
VSIQSGGKPGIGKFLMCVCNEGDEVLFPSPGYPIYESMARFLNTKPVPYC
YKETENGFELDISELESKVTSRTKAIFLNNFQNPMGVAHSLNELEDIAAL
CIEKDLFVFSDDPYYQIVFSDFPQNDFVHIAKLPGMLSRTVCDYTFSKSF
AMTGWRLGGVLGPKWLIDQVTKINTNDEACTTHFVQVAGVTALTDPAAAQ
FTKDMVAELEQRRDVLYEVLNDVPGFKAIKPKATFYMMCNVTEAMSMMGV
TSIEEFRSKVLQTTGVSFCTRAHFGTPIPGETEKYVRFAFSGVTIDQIKE
AGKSLKPYMAQFC*
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spliced messenger RNA

>Gvermi12401.t1 ID=Gvermi12401.t1|Name=Gvermi12401.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=1242bp|location=Sequence derived from alignment at ScGOVlb_3404:4564228..4565469- (Gracilaria vermiculophylla HapMaleFtJ_2017 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGGGATCCGTCGCTAACTATCGTGACCCTTTGGCAGACCGCCTTGGCCG
TTTGGGCACTGAGACTGCATACGCCGTCGCACTTGAGGCTGGTCAAATTA
AGGCTACCGGCAAGACCGTCTATCCTTTCCATATTGGCGACCTTAACTTC
CGAACTCCCAAAGTCGTTGTCGACGCCTGCAAGCAGGCTCTTGATGACGG
TTTCACTGGCTATTGCCCCGCGGCCGGAATCCCATCGCTTCGCGCCGCAC
TGGCTGACCATTACAATCAAGTGTTCGGCCTCGAGTACTCCGCCTCAAAT
GTGTCCATTCAGAGCGGCGGTAAACCAGGTATTGGAAAATTCCTCATGTG
CGTGTGTAACGAGGGTGATGAAGTGCTATTCCCCAGCCCAGGCTACCCCA
TATACGAAAGCATGGCGCGCTTCCTGAATACGAAGCCGGTGCCGTACTGT
TACAAGGAAACTGAGAACGGCTTCGAGTTAGATATCTCGGAACTGGAGTC
GAAGGTGACCAGCCGTACGAAGGCTATTTTTCTAAATAACTTCCAGAACC
CCATGGGTGTAGCTCACAGCCTGAACGAGCTTGAGGACATCGCTGCCCTA
TGCATTGAGAAGGATCTATTCGTGTTCTCTGATGACCCGTATTACCAGAT
TGTGTTCTCGGACTTTCCCCAAAATGACTTTGTGCACATAGCCAAGCTTC
CCGGAATGCTGTCTCGCACTGTGTGTGACTACACTTTTTCGAAAAGCTTC
GCCATGACTGGATGGCGACTTGGGGGAGTGCTCGGCCCGAAGTGGTTGAT
TGACCAAGTGACCAAGATCAATACAAACGACGAGGCCTGCACCACGCACT
TCGTGCAGGTGGCGGGCGTGACGGCTCTGACCGACCCAGCTGCAGCCCAA
TTTACGAAGGACATGGTTGCCGAACTCGAGCAACGTCGAGATGTTTTGTA
TGAAGTGCTAAACGATGTACCGGGCTTCAAGGCCATCAAGCCCAAAGCCA
CGTTCTACATGATGTGCAATGTAACGGAGGCCATGAGCATGATGGGAGTT
ACCAGCATTGAAGAGTTCAGATCAAAGGTGCTTCAAACCACTGGCGTGTC
GTTCTGCACACGAGCACATTTCGGTACACCCATTCCCGGGGAGACTGAGA
AATATGTTCGATTTGCTTTCTCTGGCGTCACTATTGACCAAATTAAGGAG
GCAGGCAAATCGCTTAAGCCTTACATGGCCCAGTTCTGTTAA
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protein sequence of Gvermi12401.t1

>Gvermi12401.t1 ID=Gvermi12401.t1|Name=Gvermi12401.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=polypeptide|length=414bp
MGSVANYRDPLADRLGRLGTETAYAVALEAGQIKATGKTVYPFHIGDLNF
RTPKVVVDACKQALDDGFTGYCPAAGIPSLRAALADHYNQVFGLEYSASN
VSIQSGGKPGIGKFLMCVCNEGDEVLFPSPGYPIYESMARFLNTKPVPYC
YKETENGFELDISELESKVTSRTKAIFLNNFQNPMGVAHSLNELEDIAAL
CIEKDLFVFSDDPYYQIVFSDFPQNDFVHIAKLPGMLSRTVCDYTFSKSF
AMTGWRLGGVLGPKWLIDQVTKINTNDEACTTHFVQVAGVTALTDPAAAQ
FTKDMVAELEQRRDVLYEVLNDVPGFKAIKPKATFYMMCNVTEAMSMMGV
TSIEEFRSKVLQTTGVSFCTRAHFGTPIPGETEKYVRFAFSGVTIDQIKE
AGKSLKPYMAQFC*
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mRNA from alignment at ScGOVlb_3404:4564228..4565469-

Legend: polypeptideCDSexonstart_codonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Gvermi12401.t1 ID=Gvermi12401.t1|Name=Gvermi12401.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=1242bp|location=Sequence derived from alignment at ScGOVlb_3404:4564228..4565469- (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
ATGGGATCCGTCGCTAACTATCGTGACCCTTTGGCAGACCGCCTTGGCCG
TTTGGGCACTGAGACTGCATACGCCGTCGCACTTGAGGCTGGTCAAATTA
AGGCTACCGGCAAGACCGTCTATCCTTTCCATATTGGCGACCTTAACTTC
CGAACTCCCAAAGTCGTTGTCGACGCCTGCAAGCAGGCTCTTGATGACGG
TTTCACTGGCTATTGCCCCGCGGCCGGAATCCCATCGCTTCGCGCCGCAC
TGGCTGACCATTACAATCAAGTGTTCGGCCTCGAGTACTCCGCCTCAAAT
GTGTCCATTCAGAGCGGCGGTAAACCAGGTATTGGAAAATTCCTCATGTG
CGTGTGTAACGAGGGTGATGAAGTGCTATTCCCCAGCCCAGGCTACCCCA
TATACGAAAGCATGGCGCGCTTCCTGAATACGAAGCCGGTGCCGTACTGT
TACAAGGAAACTGAGAACGGCTTCGAGTTAGATATCTCGGAACTGGAGTC
GAAGGTGACCAGCCGTACGAAGGCTATTTTTCTAAATAACTTCCAGAACC
CCATGGGTGTAGCTCACAGCCTGAACGAGCTTGAGGACATCGCTGCCCTA
TGCATTGAGAAGGATCTATTCGTGTTCTCTGATGACCCGTATTACCAGAT
TGTGTTCTCGGACTTTCCCCAAAATGACTTTGTGCACATAGCCAAGCTTC
CCGGAATGCTGTCTCGCACTGTGTGTGACTACACTTTTTCGAAAAGCTTC
GCCATGACTGGATGGCGACTTGGGGGAGTGCTCGGCCCGAAGTGGTTGAT
TGACCAAGTGACCAAGATCAATACAAACGACGAGGCCTGCACCACGCACT
TCGTGCAGGTGGCGGGCGTGACGGCTCTGACCGACCCAGCTGCAGCCCAA
TTTACGAAGGACATGGTTGCCGAACTCGAGCAACGTCGAGATGTTTTGTA
TGAAGTGCTAAACGATGTACCGGGCTTCAAGGCCATCAAGCCCAAAGCCA
CGTTCTACATGATGTGCAATGTAACGGAGGCCATGAGCATGATGGGAGTT
ACCAGCATTGAAGAGTTCAGATCAAAGGTGCTTCAAACCACTGGCGTGTC
GTTCTGCACACGAGCACATTTCGGTACACCCATTCCCGGGGAGACTGAGA
AATATGTTCGATTTGCTTTCTCTGGCGTCACTATTGACCAAATTAAGGAG
GCAGGCAAATCGCTTAAGCCTTACATGGCCCAGTTCTGTTAA
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Coding sequence (CDS) from alignment at ScGOVlb_3404:4564228..4565469-

>Gvermi12401.t1 ID=Gvermi12401.t1|Name=Gvermi12401.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=CDS|length=1242bp|location=Sequence derived from alignment at ScGOVlb_3404:4564228..4565469- (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
ATGGGATCCGTCGCTAACTATCGTGACCCTTTGGCAGACCGCCTTGGCCG
TTTGGGCACTGAGACTGCATACGCCGTCGCACTTGAGGCTGGTCAAATTA
AGGCTACCGGCAAGACCGTCTATCCTTTCCATATTGGCGACCTTAACTTC
CGAACTCCCAAAGTCGTTGTCGACGCCTGCAAGCAGGCTCTTGATGACGG
TTTCACTGGCTATTGCCCCGCGGCCGGAATCCCATCGCTTCGCGCCGCAC
TGGCTGACCATTACAATCAAGTGTTCGGCCTCGAGTACTCCGCCTCAAAT
GTGTCCATTCAGAGCGGCGGTAAACCAGGTATTGGAAAATTCCTCATGTG
CGTGTGTAACGAGGGTGATGAAGTGCTATTCCCCAGCCCAGGCTACCCCA
TATACGAAAGCATGGCGCGCTTCCTGAATACGAAGCCGGTGCCGTACTGT
TACAAGGAAACTGAGAACGGCTTCGAGTTAGATATCTCGGAACTGGAGTC
GAAGGTGACCAGCCGTACGAAGGCTATTTTTCTAAATAACTTCCAGAACC
CCATGGGTGTAGCTCACAGCCTGAACGAGCTTGAGGACATCGCTGCCCTA
TGCATTGAGAAGGATCTATTCGTGTTCTCTGATGACCCGTATTACCAGAT
TGTGTTCTCGGACTTTCCCCAAAATGACTTTGTGCACATAGCCAAGCTTC
CCGGAATGCTGTCTCGCACTGTGTGTGACTACACTTTTTCGAAAAGCTTC
GCCATGACTGGATGGCGACTTGGGGGAGTGCTCGGCCCGAAGTGGTTGAT
TGACCAAGTGACCAAGATCAATACAAACGACGAGGCCTGCACCACGCACT
TCGTGCAGGTGGCGGGCGTGACGGCTCTGACCGACCCAGCTGCAGCCCAA
TTTACGAAGGACATGGTTGCCGAACTCGAGCAACGTCGAGATGTTTTGTA
TGAAGTGCTAAACGATGTACCGGGCTTCAAGGCCATCAAGCCCAAAGCCA
CGTTCTACATGATGTGCAATGTAACGGAGGCCATGAGCATGATGGGAGTT
ACCAGCATTGAAGAGTTCAGATCAAAGGTGCTTCAAACCACTGGCGTGTC
GTTCTGCACACGAGCACATTTCGGTACACCCATTCCCGGGGAGACTGAGA
AATATGTTCGATTTGCTTTCTCTGGCGTCACTATTGACCAAATTAAGGAG
GCAGGCAAATCGCTTAAGCCTTACATGGCCCAGTTCTGTTAA
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