Gvermi12463.t1 (mRNA) Gracilaria vermiculophylla HapMaleFtJ_2017 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGvermi12463.t1
Unique NameGvermi12463.t1
TypemRNA
OrganismGracilaria vermiculophylla HapMaleFtJ_2017 male (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
Sequence length281
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
ScGOVlb_3404contigScGOVlb_3404:4935010..4935852 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria vermiculophylla HapMaleFtJ_2017 male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog130081.XP_005703145.1
PFAMsIPK
Max annot lvl2759|Eukaryota
KEGG rclassRC00002
KEGG koko:K07756
KEGG ReactionR09087,R10548
KEGG Pathwayko04070,ko04138,map04070,map04138
Evalue4.6e-38
EggNOG OGsKOG1620@1|root,KOG1620@2759|Eukaryota
EC2.7.4.21
Descriptioninositol phosphate biosynthetic process
COG categoryG
BRITEko00000,ko00001,ko01000
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Gvermi12463Gvermi12463Gracilaria vermiculophylla HapMaleFtJ_2017 malegeneScGOVlb_3404 4935010..4935852 -


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi12463.t1.stop1Gvermi12463.t1.stop1Gracilaria vermiculophylla HapMaleFtJ_2017 malestop_codonScGOVlb_3404 4935010..4935012 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi12463.t1.CDS1Gvermi12463.t1.CDS1Gracilaria vermiculophylla HapMaleFtJ_2017 maleCDSScGOVlb_3404 4935010..4935852 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi12463.t1.exon1Gvermi12463.t1.exon1Gracilaria vermiculophylla HapMaleFtJ_2017 maleexonScGOVlb_3404 4935010..4935852 -


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi12463.t1.start1Gvermi12463.t1.start1Gracilaria vermiculophylla HapMaleFtJ_2017 malestart_codonScGOVlb_3404 4935850..4935852 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi12463.t1Gvermi12463.t1Gracilaria vermiculophylla HapMaleFtJ_2017 malepolypeptideScGOVlb_3404 4935010..4935852 -


Sequences
The following sequences are available for this feature:

mRNA sequence

>Gvermi12463.t1 ID=Gvermi12463.t1|Name=Gvermi12463.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=281bp
MQRPPSPQRAPGCQYPIQVAGHQRIRQSTVGRILKPWSRKEEAFYRAIND
ERFPAHLHWMRSVTPLFYGVQHAPCGSERWIELQDLNHPFVTPCVMDVKI
GFRHYDDDACAQKRERQIDAANSTTTATCGVRFVGTRSFKRSGGAGGDRG
HFVVRDKWHGRALSEEELLPEVVWFFSDGLSFDARSARLALDALQRICRQ
FARQKQFCFYSSSMLFIYEGAKGSAHYPRVDVRMIDFSHTVDSAGLHDTG
YLKGLEYMVRLLGEAVDTAPRAARSADAQQ*
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spliced messenger RNA

>Gvermi12463.t1 ID=Gvermi12463.t1|Name=Gvermi12463.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=843bp|location=Sequence derived from alignment at ScGOVlb_3404:4935010..4935852- (Gracilaria vermiculophylla HapMaleFtJ_2017 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGCAGCGCCCTCCGTCGCCGCAACGCGCTCCTGGCTGCCAGTACCCCAT
ACAGGTGGCCGGCCACCAGCGCATCAGGCAGAGCACAGTCGGGCGCATTC
TCAAGCCGTGGTCGCGCAAGGAGGAGGCGTTCTACCGCGCAATCAACGAC
GAGCGCTTCCCGGCGCACTTGCATTGGATGCGCTCGGTCACGCCGCTGTT
CTACGGCGTGCAGCACGCGCCGTGCGGCTCCGAGCGCTGGATTGAGCTGC
AGGACTTGAACCACCCTTTTGTGACCCCTTGTGTGATGGACGTGAAGATT
GGCTTTCGACATTACGATGACGATGCGTGTGCGCAGAAGCGCGAGAGGCA
AATCGATGCGGCCAATTCCACCACGACGGCGACGTGCGGCGTGCGCTTCG
TTGGAACCAGGTCGTTCAAACGCAGCGGCGGCGCTGGTGGCGACCGCGGC
CACTTTGTTGTGCGCGACAAATGGCACGGGAGGGCGCTGTCGGAAGAGGA
GCTGCTGCCGGAGGTCGTGTGGTTCTTCAGCGATGGGTTGTCGTTTGACG
CGCGCAGCGCGCGGCTGGCGCTGGACGCGCTGCAGCGCATCTGCCGACAG
TTTGCGCGCCAGAAGCAGTTTTGCTTCTACTCGTCCTCCATGCTGTTCAT
CTACGAGGGGGCCAAGGGCAGCGCGCACTACCCGCGCGTTGACGTTCGAA
TGATTGACTTCTCGCACACGGTGGACTCTGCCGGCCTGCACGACACCGGC
TACCTGAAGGGTCTCGAGTACATGGTGCGGCTCTTGGGCGAAGCAGTGGA
CACAGCGCCACGCGCTGCGCGCAGCGCAGATGCGCAACAGTGA
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protein sequence of Gvermi12463.t1

>Gvermi12463.t1 ID=Gvermi12463.t1|Name=Gvermi12463.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=polypeptide|length=281bp
MQRPPSPQRAPGCQYPIQVAGHQRIRQSTVGRILKPWSRKEEAFYRAIND
ERFPAHLHWMRSVTPLFYGVQHAPCGSERWIELQDLNHPFVTPCVMDVKI
GFRHYDDDACAQKRERQIDAANSTTTATCGVRFVGTRSFKRSGGAGGDRG
HFVVRDKWHGRALSEEELLPEVVWFFSDGLSFDARSARLALDALQRICRQ
FARQKQFCFYSSSMLFIYEGAKGSAHYPRVDVRMIDFSHTVDSAGLHDTG
YLKGLEYMVRLLGEAVDTAPRAARSADAQQ*
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mRNA from alignment at ScGOVlb_3404:4935010..4935852-

Legend: polypeptideCDSexonstart_codonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Gvermi12463.t1 ID=Gvermi12463.t1|Name=Gvermi12463.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=843bp|location=Sequence derived from alignment at ScGOVlb_3404:4935010..4935852- (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
ATGCAGCGCCCTCCGTCGCCGCAACGCGCTCCTGGCTGCCAGTACCCCAT
ACAGGTGGCCGGCCACCAGCGCATCAGGCAGAGCACAGTCGGGCGCATTC
TCAAGCCGTGGTCGCGCAAGGAGGAGGCGTTCTACCGCGCAATCAACGAC
GAGCGCTTCCCGGCGCACTTGCATTGGATGCGCTCGGTCACGCCGCTGTT
CTACGGCGTGCAGCACGCGCCGTGCGGCTCCGAGCGCTGGATTGAGCTGC
AGGACTTGAACCACCCTTTTGTGACCCCTTGTGTGATGGACGTGAAGATT
GGCTTTCGACATTACGATGACGATGCGTGTGCGCAGAAGCGCGAGAGGCA
AATCGATGCGGCCAATTCCACCACGACGGCGACGTGCGGCGTGCGCTTCG
TTGGAACCAGGTCGTTCAAACGCAGCGGCGGCGCTGGTGGCGACCGCGGC
CACTTTGTTGTGCGCGACAAATGGCACGGGAGGGCGCTGTCGGAAGAGGA
GCTGCTGCCGGAGGTCGTGTGGTTCTTCAGCGATGGGTTGTCGTTTGACG
CGCGCAGCGCGCGGCTGGCGCTGGACGCGCTGCAGCGCATCTGCCGACAG
TTTGCGCGCCAGAAGCAGTTTTGCTTCTACTCGTCCTCCATGCTGTTCAT
CTACGAGGGGGCCAAGGGCAGCGCGCACTACCCGCGCGTTGACGTTCGAA
TGATTGACTTCTCGCACACGGTGGACTCTGCCGGCCTGCACGACACCGGC
TACCTGAAGGGTCTCGAGTACATGGTGCGGCTCTTGGGCGAAGCAGTGGA
CACAGCGCCACGCGCTGCGCGCAGCGCAGATGCGCAACAGTGA
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Coding sequence (CDS) from alignment at ScGOVlb_3404:4935010..4935852-

>Gvermi12463.t1 ID=Gvermi12463.t1|Name=Gvermi12463.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=CDS|length=843bp|location=Sequence derived from alignment at ScGOVlb_3404:4935010..4935852- (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
ATGCAGCGCCCTCCGTCGCCGCAACGCGCTCCTGGCTGCCAGTACCCCAT
ACAGGTGGCCGGCCACCAGCGCATCAGGCAGAGCACAGTCGGGCGCATTC
TCAAGCCGTGGTCGCGCAAGGAGGAGGCGTTCTACCGCGCAATCAACGAC
GAGCGCTTCCCGGCGCACTTGCATTGGATGCGCTCGGTCACGCCGCTGTT
CTACGGCGTGCAGCACGCGCCGTGCGGCTCCGAGCGCTGGATTGAGCTGC
AGGACTTGAACCACCCTTTTGTGACCCCTTGTGTGATGGACGTGAAGATT
GGCTTTCGACATTACGATGACGATGCGTGTGCGCAGAAGCGCGAGAGGCA
AATCGATGCGGCCAATTCCACCACGACGGCGACGTGCGGCGTGCGCTTCG
TTGGAACCAGGTCGTTCAAACGCAGCGGCGGCGCTGGTGGCGACCGCGGC
CACTTTGTTGTGCGCGACAAATGGCACGGGAGGGCGCTGTCGGAAGAGGA
GCTGCTGCCGGAGGTCGTGTGGTTCTTCAGCGATGGGTTGTCGTTTGACG
CGCGCAGCGCGCGGCTGGCGCTGGACGCGCTGCAGCGCATCTGCCGACAG
TTTGCGCGCCAGAAGCAGTTTTGCTTCTACTCGTCCTCCATGCTGTTCAT
CTACGAGGGGGCCAAGGGCAGCGCGCACTACCCGCGCGTTGACGTTCGAA
TGATTGACTTCTCGCACACGGTGGACTCTGCCGGCCTGCACGACACCGGC
TACCTGAAGGGTCTCGAGTACATGGTGCGGCTCTTGGGCGAAGCAGTGGA
CACAGCGCCACGCGCTGCGCGCAGCGCAGATGCGCAACAGTGA
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