Gvermi12249.t1 (mRNA) Gracilaria vermiculophylla HapMaleFtJ_2017 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGvermi12249.t1
Unique NameGvermi12249.t1
TypemRNA
OrganismGracilaria vermiculophylla HapMaleFtJ_2017 male (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
Sequence length153
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
ScGOVlb_3404contigScGOVlb_3404:3972908..3973595 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria vermiculophylla HapMaleFtJ_2017 male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog69293.ENSGACP00000011929
Preferred namePOLR2H
PFAMsRNA_pol_Rpb8
Max annot lvl33208|Metazoa
KEGG rclassRC02795
KEGG koko:K03016
KEGG ReactionR00435,R00441,R00442,R00443
KEGG Pathwayko00230,ko00240,ko01100,ko03020,ko04623,ko05016,ko05169,map00230,map00240,map01100,map03020,map04623,map05016,map05169
KEGG ModuleM00180,M00181,M00182
GOsGO:0000375,GO:0000377,GO:0000398,GO:0000428,GO:0003674,GO:0003676,GO:0003677,GO:0003697,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005654,GO:0005665,GO:0005666,GO:0005730,GO:0005736,GO:0005737,GO:0005829,GO:0006139,GO:0006259,GO:0006281,GO:0006283,GO:0006289,GO:0006351,GO:0006352,GO:0006353,GO:0006354,GO:0006360,GO:0006361,GO:0006363,GO:0006366,GO:0006367,GO:0006368,GO:0006370,GO:0006396,GO:0006397,GO:0006725,GO:0006807,GO:0006950,GO:0006974,GO:0007154,GO:0007165,GO:0007166,GO:0007167,GO:0007169,GO:0008150,GO:0008152,GO:0008380,GO:0008543,GO:0009058,GO:0009059,GO:0009301,GO:0009452,GO:0009719,GO:0009893,GO:0009987,GO:0010033,GO:0010467,GO:0010468,GO:0010604,GO:0010628,GO:0016070,GO:0016071,GO:0016073,GO:0016591,GO:0018130,GO:0019222,GO:0019438,GO:0023052,GO:0030880,GO:0031974,GO:0031981,GO:0032774,GO:0032991,GO:0032993,GO:0033554,GO:0034641,GO:0034645,GO:0034654,GO:0034660,GO:0036260,GO:0040029,GO:0042221,GO:0042795,GO:0043170,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043233,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044271,GO:0044344,GO:0044422,GO:0044424,GO:0044428,GO:0044444,GO:0044446,GO:0044451,GO:0044452,GO:0044464,GO:0045815,GO:0046483,GO:0048518,GO:0050789,GO:0050794,GO:0050896,GO:0051716,GO:0055029,GO:0060147,GO:0060255,GO:0060964,GO:0060966,GO:0060968,GO:0061695,GO:0065007,GO:0070013,GO:0070848,GO:0070887,GO:0071310,GO:0071363,GO:0071495,GO:0071704,GO:0071774,GO:0090304,GO:0097159,GO:0097659,GO:0098781,GO:1901360,GO:1901362,GO:1901363,GO:1901576,GO:1902494,GO:1990234
Evalue1.88e-29
EggNOG OGsKOG3400@1|root,KOG3400@2759|Eukaryota,3A3E0@33154|Opisthokonta,3BPWR@33208|Metazoa,3CYHY@33213|Bilateria,487S3@7711|Chordata,48UW8@7742|Vertebrata,49W9C@7898|Actinopterygii
DescriptionInfo polymerase (RNA) II (DNA directed) polypeptide H
COG categoryK
BRITEbr01611,ko00000,ko00001,ko00002,ko03021,ko03400
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Gvermi12249Gvermi12249Gracilaria vermiculophylla HapMaleFtJ_2017 malegeneScGOVlb_3404 3972908..3973595 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi12249.t1Gvermi12249.t1Gracilaria vermiculophylla HapMaleFtJ_2017 malepolypeptideScGOVlb_3404 3972908..3973595 +


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi12249.t1.start1Gvermi12249.t1.start1Gracilaria vermiculophylla HapMaleFtJ_2017 malestart_codonScGOVlb_3404 3972908..3972910 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi12249.t1.CDS1Gvermi12249.t1.CDS1Gracilaria vermiculophylla HapMaleFtJ_2017 maleCDSScGOVlb_3404 3972908..3972998 +
Gvermi12249.t1.CDS2Gvermi12249.t1.CDS2Gracilaria vermiculophylla HapMaleFtJ_2017 maleCDSScGOVlb_3404 3973096..3973345 +
Gvermi12249.t1.CDS3Gvermi12249.t1.CDS3Gracilaria vermiculophylla HapMaleFtJ_2017 maleCDSScGOVlb_3404 3973478..3973595 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi12249.t1.exon1Gvermi12249.t1.exon1Gracilaria vermiculophylla HapMaleFtJ_2017 maleexonScGOVlb_3404 3972908..3972998 +
Gvermi12249.t1.exon2Gvermi12249.t1.exon2Gracilaria vermiculophylla HapMaleFtJ_2017 maleexonScGOVlb_3404 3973096..3973345 +
Gvermi12249.t1.exon3Gvermi12249.t1.exon3Gracilaria vermiculophylla HapMaleFtJ_2017 maleexonScGOVlb_3404 3973478..3973595 +


The following intron feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi12249.t1.intron1Gvermi12249.t1.intron1Gracilaria vermiculophylla HapMaleFtJ_2017 maleintronScGOVlb_3404 3972999..3973095 +
Gvermi12249.t1.intron2Gvermi12249.t1.intron2Gracilaria vermiculophylla HapMaleFtJ_2017 maleintronScGOVlb_3404 3973346..3973477 +


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi12249.t1.stop1Gvermi12249.t1.stop1Gracilaria vermiculophylla HapMaleFtJ_2017 malestop_codonScGOVlb_3404 3973593..3973595 +


Sequences
The following sequences are available for this feature:

mRNA sequence

>Gvermi12249.t1 ID=Gvermi12249.t1|Name=Gvermi12249.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=153bp
MAGIIFSDSFNIWRLDWDEKTKSVAKKFDKVSRIEGKSEAYETEVTLDVN
TEVYPMGVGETIEMLITERLEEGPPNPDETKGYNPIKPLGDRANMYDYIM
RGKIFKYTEDMQRADIYFSFGGLLMKLHGESNILLSHIFQVDADVYLFIR
KK*
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spliced messenger RNA

>Gvermi12249.t1 ID=Gvermi12249.t1|Name=Gvermi12249.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=459bp|location=Sequence derived from alignment at ScGOVlb_3404:3972908..3973595+ (Gracilaria vermiculophylla HapMaleFtJ_2017 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGGCTGGAATTATCTTTTCGGATTCATTCAACATATGGCGCTTAGATTG
GGATGAAAAGACAAAATCTGTTGCTAAAAAGTTCGACAAAGTGTCAAGAA
TTGAAGGCAAGAGCGAGGCATACGAAACGGAAGTGACACTCGATGTAAAT
ACTGAAGTATATCCGATGGGGGTGGGCGAAACTATCGAAATGCTCATAAC
GGAGCGCTTGGAAGAAGGCCCGCCGAACCCTGATGAAACAAAAGGATACA
ATCCAATAAAGCCTCTTGGAGATCGCGCAAATATGTACGATTACATCATG
CGAGGCAAGATATTCAAGTACACGGAGGACATGCAAAGAGCTGATATATA
CTTTTCTTTTGGTGGCTTGTTAATGAAATTGCACGGCGAGTCAAACATTC
TGCTTTCCCACATCTTTCAAGTGGATGCAGATGTATACCTATTCATAAGG
AAAAAGTAG
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protein sequence of Gvermi12249.t1

>Gvermi12249.t1 ID=Gvermi12249.t1|Name=Gvermi12249.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=polypeptide|length=153bp
MAGIIFSDSFNIWRLDWDEKTKSVAKKFDKVSRIEGKSEAYETEVTLDVN
TEVYPMGVGETIEMLITERLEEGPPNPDETKGYNPIKPLGDRANMYDYIM
RGKIFKYTEDMQRADIYFSFGGLLMKLHGESNILLSHIFQVDADVYLFIR
KK*
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mRNA from alignment at ScGOVlb_3404:3972908..3973595+

Legend: polypeptidestart_codonCDSexonintronstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Gvermi12249.t1 ID=Gvermi12249.t1|Name=Gvermi12249.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=688bp|location=Sequence derived from alignment at ScGOVlb_3404:3972908..3973595+ (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
ATGGCTGGAATTATCTTTTCGGATTCATTCAACATATGGCGCTTAGATTG
GGATGAAAAGACAAAATCTGTTGCTAAAAAGTTCGACAAAGGTACGTGCA
AACTACGAAAACAACACAGGCCTTTCAAAATATCACAACAGCTTGCACTT
TACTGACCTCAATTCATTCCATCTCGCGTATCTTGAAGTGTCAAGAATTG
AAGGCAAGAGCGAGGCATACGAAACGGAAGTGACACTCGATGTAAATACT
GAAGTATATCCGATGGGGGTGGGCGAAACTATCGAAATGCTCATAACGGA
GCGCTTGGAAGAAGGCCCGCCGAACCCTGATGAAACAAAAGGATACAATC
CAATAAAGCCTCTTGGAGATCGCGCAAATATGTACGATTACATCATGCGA
GGCAAGATATTCAAGTACACGGAGGACATGCAAAGAGCGTAAGTTGTGAT
ACATTCCTGGAAGTGTGCGTCAAAGACAGGGCCAAGATTGAGTCGCACAT
CATTTTAGACCACTATGACGATGAATATTTGCTAACCGTAGCTCCATCAC
TGCATGATTCGCAATGCAAGTGATATATACTTTTCTTTTGGTGGCTTGTT
AATGAAATTGCACGGCGAGTCAAACATTCTGCTTTCCCACATCTTTCAAG
TGGATGCAGATGTATACCTATTCATAAGGAAAAAGTAG
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Coding sequence (CDS) from alignment at ScGOVlb_3404:3972908..3973595+

>Gvermi12249.t1 ID=Gvermi12249.t1|Name=Gvermi12249.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=CDS|length=459bp|location=Sequence derived from alignment at ScGOVlb_3404:3972908..3973595+ (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
ATGGCTGGAATTATCTTTTCGGATTCATTCAACATATGGCGCTTAGATTG
GGATGAAAAGACAAAATCTGTTGCTAAAAAGTTCGACAAAGTGTCAAGAA
TTGAAGGCAAGAGCGAGGCATACGAAACGGAAGTGACACTCGATGTAAAT
ACTGAAGTATATCCGATGGGGGTGGGCGAAACTATCGAAATGCTCATAAC
GGAGCGCTTGGAAGAAGGCCCGCCGAACCCTGATGAAACAAAAGGATACA
ATCCAATAAAGCCTCTTGGAGATCGCGCAAATATGTACGATTACATCATG
CGAGGCAAGATATTCAAGTACACGGAGGACATGCAAAGAGCTGATATATA
CTTTTCTTTTGGTGGCTTGTTAATGAAATTGCACGGCGAGTCAAACATTC
TGCTTTCCCACATCTTTCAAGTGGATGCAGATGTATACCTATTCATAAGG
AAAAAGTAG
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