Gvermi12302.t1 (mRNA) Gracilaria vermiculophylla HapMaleFtJ_2017 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	Gvermi12302.t1
Unique Name	Gvermi12302.t1
Type	mRNA
Organism	Gracilaria vermiculophylla HapMaleFtJ_2017 male (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
Sequence length	441

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
ScGOVlb_3404	contig	ScGOVlb_3404:4139891..4141213 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gracilaria vermiculophylla HapMaleFtJ_2017 male OGS1.0	2022-05-09

Properties


Property Name	Value
Seed ortholog	395019.Bmul_0148
Max annot lvl	28216\|Betaproteobacteria
Evalue	7.4e-06
EggNOG OGs	COG4278@1\|root,COG4278@2\|Bacteria,1RI3P@1224\|Proteobacteria,2W0YI@28216\|Betaproteobacteria,1K6BC@119060\|Burkholderiaceae
Description	phenylacetate-CoA ligase activity
COG category	H

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
Gvermi12302	Gvermi12302	Gracilaria vermiculophylla HapMaleFtJ_2017 male	gene	ScGOVlb_3404 4139891..4141213 +

The following start_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gvermi12302.t1.start1	Gvermi12302.t1.start1	Gracilaria vermiculophylla HapMaleFtJ_2017 male	start_codon	ScGOVlb_3404 4139891..4139893 +

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gvermi12302.t1.CDS1	Gvermi12302.t1.CDS1	Gracilaria vermiculophylla HapMaleFtJ_2017 male	CDS	ScGOVlb_3404 4139891..4141213 +

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gvermi12302.t1.exon1	Gvermi12302.t1.exon1	Gracilaria vermiculophylla HapMaleFtJ_2017 male	exon	ScGOVlb_3404 4139891..4141213 +

The following stop_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gvermi12302.t1.stop1	Gvermi12302.t1.stop1	Gracilaria vermiculophylla HapMaleFtJ_2017 male	stop_codon	ScGOVlb_3404 4141211..4141213 +

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gvermi12302.t1	Gvermi12302.t1	Gracilaria vermiculophylla HapMaleFtJ_2017 male	polypeptide	ScGOVlb_3404 4139891..4141213 +

Sequences

The following sequences are available for this feature:

mRNA sequence
mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at ScGOVlb_3404:4139891..4141213+
coding sequence from alignment at ScGOVlb_3404:4139891..4141213+

mRNA sequence

>Gvermi12302.t1 ID=Gvermi12302.t1|Name=Gvermi12302.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=441bp
MGFLGFDLVYELQVELGWEKEFATAARKEYLRYLELRAKAQDHRACKLTP
SRVIAIVWNLHRQWTVDYENTCAALGGYIHHYPPAMRLGLPSEQTYANTV
EMYKTHFNENPPDAYWGLPICSTKPSSSNVDYLSPLKVADRTDALIQPGT
KLKRRSQAVGSSRVLAPAMARTIDATNPTASVAMGHTKSEPKSPTSKRTS
GTIRVRQGYVLRPMPPGEKRKRGRPSMSEYIPAAQATSQLQDYVGNATPL
EGPIKPATSGAVSVPGRGSAAMLKSRRQQGKPLDAKDVNVNGRTASDVPA
AAAMFKRPRGRPRKDGSWPVPRTRPGPVMKQKIEPITSADAQMSTESDQP
PTSAQPIAVQDSTDQTPKGTSGDEAGKGEEMAQRVATGSGDNEMIDVSEN
AQKKELVSTPQSSPTHLVPQATMPAAAPQPMETDKGPTAV*

spliced messenger RNA

>Gvermi12302.t1 ID=Gvermi12302.t1|Name=Gvermi12302.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=1323bp|location=Sequence derived from alignment at ScGOVlb_3404:4139891..4141213+ (Gracilaria vermiculophylla HapMaleFtJ_2017 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGGGTTTCCTAGGATTCGATTTGGTTTACGAGCTTCAAGTGGAGCTTGG
GTGGGAGAAGGAATTTGCCACAGCTGCTCGCAAGGAATATTTGAGGTATT
TGGAGCTTCGAGCAAAGGCCCAGGACCATCGAGCATGCAAGTTGACCCCC
AGCAGAGTGATTGCCATCGTATGGAATTTGCATCGCCAGTGGACCGTAGA
CTATGAAAACACCTGTGCCGCTCTAGGAGGTTACATACATCACTACCCCC
CTGCCATGCGCTTGGGGCTTCCCAGCGAGCAGACATATGCCAACACTGTC
GAGATGTACAAAACCCACTTCAATGAGAACCCCCCTGATGCGTACTGGGG
ACTCCCCATATGTTCCACCAAACCTTCGTCTTCGAACGTTGACTACCTTA
GCCCTCTCAAAGTAGCTGATCGCACGGATGCACTAATACAGCCTGGAACC
AAGTTGAAGAGGCGGTCTCAAGCCGTTGGCAGCAGCCGTGTGCTTGCGCC
TGCAATGGCTCGAACCATCGATGCTACCAATCCCACTGCTAGTGTCGCCA
TGGGTCACACCAAATCGGAGCCCAAATCGCCAACGTCAAAGCGAACATCC
GGAACAATTCGTGTTCGACAAGGATATGTGCTCCGTCCGATGCCTCCTGG
AGAGAAACGGAAAAGGGGTCGTCCAAGCATGTCCGAGTATATTCCTGCAG
CTCAGGCCACCTCGCAGTTGCAAGATTATGTTGGAAATGCGACACCGTTG
GAAGGACCAATAAAACCTGCAACCTCCGGGGCTGTGTCTGTGCCAGGCCG
TGGAAGTGCTGCCATGCTGAAAAGCCGACGTCAGCAAGGTAAACCGCTCG
ACGCTAAAGATGTCAACGTCAACGGTCGTACCGCGAGCGACGTTCCGGCT
GCGGCGGCTATGTTCAAAAGACCAAGAGGACGCCCTCGTAAGGATGGATC
ATGGCCTGTTCCACGCACCCGCCCAGGACCGGTCATGAAGCAAAAAATTG
AGCCGATCACCTCTGCCGACGCACAAATGTCAACTGAGTCAGATCAGCCG
CCCACCAGTGCTCAGCCCATTGCTGTGCAGGACAGCACAGATCAGACCCC
TAAGGGCACCTCTGGTGATGAAGCGGGAAAAGGTGAGGAAATGGCGCAGA
GGGTGGCCACTGGCTCAGGAGACAACGAGATGATTGACGTCAGTGAAAAT
GCTCAAAAGAAGGAGCTTGTGTCAACACCACAGAGTTCTCCCACTCACTT
AGTTCCGCAAGCCACGATGCCAGCTGCTGCCCCCCAACCAATGGAAACCG
ATAAGGGTCCCACTGCGGTGTGA

protein sequence of Gvermi12302.t1

>Gvermi12302.t1 ID=Gvermi12302.t1|Name=Gvermi12302.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=polypeptide|length=441bp
MGFLGFDLVYELQVELGWEKEFATAARKEYLRYLELRAKAQDHRACKLTP
SRVIAIVWNLHRQWTVDYENTCAALGGYIHHYPPAMRLGLPSEQTYANTV
EMYKTHFNENPPDAYWGLPICSTKPSSSNVDYLSPLKVADRTDALIQPGT
KLKRRSQAVGSSRVLAPAMARTIDATNPTASVAMGHTKSEPKSPTSKRTS
GTIRVRQGYVLRPMPPGEKRKRGRPSMSEYIPAAQATSQLQDYVGNATPL
EGPIKPATSGAVSVPGRGSAAMLKSRRQQGKPLDAKDVNVNGRTASDVPA
AAAMFKRPRGRPRKDGSWPVPRTRPGPVMKQKIEPITSADAQMSTESDQP
PTSAQPIAVQDSTDQTPKGTSGDEAGKGEEMAQRVATGSGDNEMIDVSEN
AQKKELVSTPQSSPTHLVPQATMPAAAPQPMETDKGPTAV*

mRNA from alignment at ScGOVlb_3404:4139891..4141213+

Legend: start_codonpolypeptideCDSexonstop_codon

Hold the cursor over a type above to highlight its positions in the sequence below.

>Gvermi12302.t1 ID=Gvermi12302.t1|Name=Gvermi12302.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=1323bp|location=Sequence derived from alignment at ScGOVlb_3404:4139891..4141213+ (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
ATGGGTTTCCTAGGATTCGATTTGGTTTACGAGCTTCAAGTGGAGCTTGG
GTGGGAGAAGGAATTTGCCACAGCTGCTCGCAAGGAATATTTGAGGTATT
TGGAGCTTCGAGCAAAGGCCCAGGACCATCGAGCATGCAAGTTGACCCCC
AGCAGAGTGATTGCCATCGTATGGAATTTGCATCGCCAGTGGACCGTAGA
CTATGAAAACACCTGTGCCGCTCTAGGAGGTTACATACATCACTACCCCC
CTGCCATGCGCTTGGGGCTTCCCAGCGAGCAGACATATGCCAACACTGTC
GAGATGTACAAAACCCACTTCAATGAGAACCCCCCTGATGCGTACTGGGG
ACTCCCCATATGTTCCACCAAACCTTCGTCTTCGAACGTTGACTACCTTA
GCCCTCTCAAAGTAGCTGATCGCACGGATGCACTAATACAGCCTGGAACC
AAGTTGAAGAGGCGGTCTCAAGCCGTTGGCAGCAGCCGTGTGCTTGCGCC
TGCAATGGCTCGAACCATCGATGCTACCAATCCCACTGCTAGTGTCGCCA
TGGGTCACACCAAATCGGAGCCCAAATCGCCAACGTCAAAGCGAACATCC
GGAACAATTCGTGTTCGACAAGGATATGTGCTCCGTCCGATGCCTCCTGG
AGAGAAACGGAAAAGGGGTCGTCCAAGCATGTCCGAGTATATTCCTGCAG
CTCAGGCCACCTCGCAGTTGCAAGATTATGTTGGAAATGCGACACCGTTG
GAAGGACCAATAAAACCTGCAACCTCCGGGGCTGTGTCTGTGCCAGGCCG
TGGAAGTGCTGCCATGCTGAAAAGCCGACGTCAGCAAGGTAAACCGCTCG
ACGCTAAAGATGTCAACGTCAACGGTCGTACCGCGAGCGACGTTCCGGCT
GCGGCGGCTATGTTCAAAAGACCAAGAGGACGCCCTCGTAAGGATGGATC
ATGGCCTGTTCCACGCACCCGCCCAGGACCGGTCATGAAGCAAAAAATTG
AGCCGATCACCTCTGCCGACGCACAAATGTCAACTGAGTCAGATCAGCCG
CCCACCAGTGCTCAGCCCATTGCTGTGCAGGACAGCACAGATCAGACCCC
TAAGGGCACCTCTGGTGATGAAGCGGGAAAAGGTGAGGAAATGGCGCAGA
GGGTGGCCACTGGCTCAGGAGACAACGAGATGATTGACGTCAGTGAAAAT
GCTCAAAAGAAGGAGCTTGTGTCAACACCACAGAGTTCTCCCACTCACTT
AGTTCCGCAAGCCACGATGCCAGCTGCTGCCCCCCAACCAATGGAAACCG
ATAAGGGTCCCACTGCGGTGTGA

Coding sequence (CDS) from alignment at ScGOVlb_3404:4139891..4141213+

>Gvermi12302.t1 ID=Gvermi12302.t1|Name=Gvermi12302.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=CDS|length=1323bp|location=Sequence derived from alignment at ScGOVlb_3404:4139891..4141213+ (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
ATGGGTTTCCTAGGATTCGATTTGGTTTACGAGCTTCAAGTGGAGCTTGG
GTGGGAGAAGGAATTTGCCACAGCTGCTCGCAAGGAATATTTGAGGTATT
TGGAGCTTCGAGCAAAGGCCCAGGACCATCGAGCATGCAAGTTGACCCCC
AGCAGAGTGATTGCCATCGTATGGAATTTGCATCGCCAGTGGACCGTAGA
CTATGAAAACACCTGTGCCGCTCTAGGAGGTTACATACATCACTACCCCC
CTGCCATGCGCTTGGGGCTTCCCAGCGAGCAGACATATGCCAACACTGTC
GAGATGTACAAAACCCACTTCAATGAGAACCCCCCTGATGCGTACTGGGG
ACTCCCCATATGTTCCACCAAACCTTCGTCTTCGAACGTTGACTACCTTA
GCCCTCTCAAAGTAGCTGATCGCACGGATGCACTAATACAGCCTGGAACC
AAGTTGAAGAGGCGGTCTCAAGCCGTTGGCAGCAGCCGTGTGCTTGCGCC
TGCAATGGCTCGAACCATCGATGCTACCAATCCCACTGCTAGTGTCGCCA
TGGGTCACACCAAATCGGAGCCCAAATCGCCAACGTCAAAGCGAACATCC
GGAACAATTCGTGTTCGACAAGGATATGTGCTCCGTCCGATGCCTCCTGG
AGAGAAACGGAAAAGGGGTCGTCCAAGCATGTCCGAGTATATTCCTGCAG
CTCAGGCCACCTCGCAGTTGCAAGATTATGTTGGAAATGCGACACCGTTG
GAAGGACCAATAAAACCTGCAACCTCCGGGGCTGTGTCTGTGCCAGGCCG
TGGAAGTGCTGCCATGCTGAAAAGCCGACGTCAGCAAGGTAAACCGCTCG
ACGCTAAAGATGTCAACGTCAACGGTCGTACCGCGAGCGACGTTCCGGCT
GCGGCGGCTATGTTCAAAAGACCAAGAGGACGCCCTCGTAAGGATGGATC
ATGGCCTGTTCCACGCACCCGCCCAGGACCGGTCATGAAGCAAAAAATTG
AGCCGATCACCTCTGCCGACGCACAAATGTCAACTGAGTCAGATCAGCCG
CCCACCAGTGCTCAGCCCATTGCTGTGCAGGACAGCACAGATCAGACCCC
TAAGGGCACCTCTGGTGATGAAGCGGGAAAAGGTGAGGAAATGGCGCAGA
GGGTGGCCACTGGCTCAGGAGACAACGAGATGATTGACGTCAGTGAAAAT
GCTCAAAAGAAGGAGCTTGTGTCAACACCACAGAGTTCTCCCACTCACTT
AGTTCCGCAAGCCACGATGCCAGCTGCTGCCCCCCAACCAATGGAAACCG
ATAAGGGTCCCACTGCGGTGTGA