Gvermi12503.t1 (mRNA) Gracilaria vermiculophylla HapMaleFtJ_2017 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGvermi12503.t1
Unique NameGvermi12503.t1
TypemRNA
OrganismGracilaria vermiculophylla HapMaleFtJ_2017 male (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
Sequence length306
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
ScGOVlb_3404contigScGOVlb_3404:5671602..5672629 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria vermiculophylla HapMaleFtJ_2017 male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog223926.28809933
PFAMsTrypsin
Max annot lvl135623|Vibrionales
Evalue2.12e-15
EggNOG OGsCOG5640@1|root,COG5640@2|Bacteria,1R5CZ@1224|Proteobacteria,1S0JW@1236|Gammaproteobacteria,1XT1R@135623|Vibrionales
Descriptiontrypsin-like serine protease
COG categoryM
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Gvermi12503Gvermi12503Gracilaria vermiculophylla HapMaleFtJ_2017 malegeneScGOVlb_3404 5671602..5672629 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi12503.t1Gvermi12503.t1Gracilaria vermiculophylla HapMaleFtJ_2017 malepolypeptideScGOVlb_3404 5671602..5672629 +


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi12503.t1.start1Gvermi12503.t1.start1Gracilaria vermiculophylla HapMaleFtJ_2017 malestart_codonScGOVlb_3404 5671602..5671604 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi12503.t1.CDS1Gvermi12503.t1.CDS1Gracilaria vermiculophylla HapMaleFtJ_2017 maleCDSScGOVlb_3404 5671602..5672213 +
Gvermi12503.t1.CDS2Gvermi12503.t1.CDS2Gracilaria vermiculophylla HapMaleFtJ_2017 maleCDSScGOVlb_3404 5672324..5672629 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi12503.t1.exon1Gvermi12503.t1.exon1Gracilaria vermiculophylla HapMaleFtJ_2017 maleexonScGOVlb_3404 5671602..5672213 +
Gvermi12503.t1.exon2Gvermi12503.t1.exon2Gracilaria vermiculophylla HapMaleFtJ_2017 maleexonScGOVlb_3404 5672324..5672629 +


The following intron feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi12503.t1.intron1Gvermi12503.t1.intron1Gracilaria vermiculophylla HapMaleFtJ_2017 maleintronScGOVlb_3404 5672214..5672323 +


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi12503.t1.stop1Gvermi12503.t1.stop1Gracilaria vermiculophylla HapMaleFtJ_2017 malestop_codonScGOVlb_3404 5672627..5672629 +


Sequences
The following sequences are available for this feature:

mRNA sequence

>Gvermi12503.t1 ID=Gvermi12503.t1|Name=Gvermi12503.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=306bp
MKCASVLSATTLALLALLIAPHALAQQVVFAEADASSQAPVVVSSHQSDP
ASNAAAQPRREGPVIHHGRAANLPRDDEQPPAAPTIVGGKRVPAKLRKHL
ARVVIETSDGGIVSCSGSVLSPTFVLSAAHCFVDPGRIDVSRSYVLVAER
TTNIRYFSSPPNKIFMRNVFVHRRYRDNGFFADDVALVELQQPIPQRFLS
PVSLRWSVCDDFAGLPVANNRRREMCYTSLDFPDRGRTGTCFGDSGGPIM
KREGGQFKQVGITSYFVGDRCESAGSVMVAMQVSRYRQMIRRKVLRGRNR
GWRRL*
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spliced messenger RNA

>Gvermi12503.t1 ID=Gvermi12503.t1|Name=Gvermi12503.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=918bp|location=Sequence derived from alignment at ScGOVlb_3404:5671602..5672629+ (Gracilaria vermiculophylla HapMaleFtJ_2017 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGAAGTGCGCGTCCGTCCTGAGCGCCACGACGCTCGCGCTGCTCGCTCT
CCTCATTGCGCCGCACGCCCTTGCGCAGCAGGTCGTCTTCGCAGAGGCTG
ACGCTTCCTCTCAAGCGCCCGTCGTCGTCTCCTCGCACCAATCAGACCCC
GCTTCCAACGCCGCCGCCCAGCCGCGCCGTGAGGGTCCCGTCATCCACCA
CGGCCGCGCCGCAAACCTTCCCCGCGATGATGAGCAACCGCCCGCCGCGC
CCACCATCGTCGGCGGTAAGAGAGTCCCCGCCAAGCTGCGCAAGCACCTC
GCCCGCGTCGTCATTGAAACCTCCGACGGGGGAATCGTCTCCTGTTCCGG
CTCCGTGCTGTCGCCCACCTTCGTGCTCTCCGCCGCGCACTGTTTCGTCG
ACCCGGGCCGCATCGACGTCTCGCGCTCCTACGTGCTCGTGGCCGAGCGC
ACGACCAACATCAGGTACTTTTCCTCGCCGCCGAACAAGATCTTCATGCG
AAACGTGTTTGTGCACCGTCGCTACCGAGACAACGGCTTCTTCGCGGACG
ATGTGGCGCTCGTCGAGCTGCAGCAACCCATTCCGCAGCGCTTTCTGAGC
CCCGTTTCGCTCCGCTGGTCTGTGTGCGATGATTTTGCGGGCTTGCCTGT
CGCAAACAATCGCCGCCGCGAGATGTGCTACACCTCGTTGGATTTCCCGG
ATCGGGGGAGGACTGGTACGTGCTTCGGGGATTCGGGCGGCCCCATCATG
AAACGGGAGGGCGGCCAGTTCAAGCAGGTCGGTATTACGAGCTATTTCGT
GGGCGACCGTTGTGAAAGCGCGGGCTCTGTCATGGTCGCTATGCAAGTGA
GCAGGTATCGACAGATGATTCGTCGAAAGGTGCTTAGAGGTCGCAATCGC
GGATGGCGCCGTCTGTGA
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protein sequence of Gvermi12503.t1

>Gvermi12503.t1 ID=Gvermi12503.t1|Name=Gvermi12503.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=polypeptide|length=306bp
MKCASVLSATTLALLALLIAPHALAQQVVFAEADASSQAPVVVSSHQSDP
ASNAAAQPRREGPVIHHGRAANLPRDDEQPPAAPTIVGGKRVPAKLRKHL
ARVVIETSDGGIVSCSGSVLSPTFVLSAAHCFVDPGRIDVSRSYVLVAER
TTNIRYFSSPPNKIFMRNVFVHRRYRDNGFFADDVALVELQQPIPQRFLS
PVSLRWSVCDDFAGLPVANNRRREMCYTSLDFPDRGRTGTCFGDSGGPIM
KREGGQFKQVGITSYFVGDRCESAGSVMVAMQVSRYRQMIRRKVLRGRNR
GWRRL*
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mRNA from alignment at ScGOVlb_3404:5671602..5672629+

Legend: polypeptidestart_codonCDSexonintronstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Gvermi12503.t1 ID=Gvermi12503.t1|Name=Gvermi12503.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=1028bp|location=Sequence derived from alignment at ScGOVlb_3404:5671602..5672629+ (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
ATGAAGTGCGCGTCCGTCCTGAGCGCCACGACGCTCGCGCTGCTCGCTCT
CCTCATTGCGCCGCACGCCCTTGCGCAGCAGGTCGTCTTCGCAGAGGCTG
ACGCTTCCTCTCAAGCGCCCGTCGTCGTCTCCTCGCACCAATCAGACCCC
GCTTCCAACGCCGCCGCCCAGCCGCGCCGTGAGGGTCCCGTCATCCACCA
CGGCCGCGCCGCAAACCTTCCCCGCGATGATGAGCAACCGCCCGCCGCGC
CCACCATCGTCGGCGGTAAGAGAGTCCCCGCCAAGCTGCGCAAGCACCTC
GCCCGCGTCGTCATTGAAACCTCCGACGGGGGAATCGTCTCCTGTTCCGG
CTCCGTGCTGTCGCCCACCTTCGTGCTCTCCGCCGCGCACTGTTTCGTCG
ACCCGGGCCGCATCGACGTCTCGCGCTCCTACGTGCTCGTGGCCGAGCGC
ACGACCAACATCAGGTACTTTTCCTCGCCGCCGAACAAGATCTTCATGCG
AAACGTGTTTGTGCACCGTCGCTACCGAGACAACGGCTTCTTCGCGGACG
ATGTGGCGCTCGTCGAGCTGCAGCAACCCATTCCGCAGCGCTTTCTGAGC
CCCGTTTCGCTCGTCAGCCCGCCATCGCAGTCGGGGCGAAGCTGCAGGCC
GCCGGTTACGGCGTCAGTGCGTCCAACGGCAACCAGCCGCGTCGCGTGCG
TCGCACCGACGTCCTGTTTCAGCGCTGGTCTGTGTGCGATGATTTTGCGG
GCTTGCCTGTCGCAAACAATCGCCGCCGCGAGATGTGCTACACCTCGTTG
GATTTCCCGGATCGGGGGAGGACTGGTACGTGCTTCGGGGATTCGGGCGG
CCCCATCATGAAACGGGAGGGCGGCCAGTTCAAGCAGGTCGGTATTACGA
GCTATTTCGTGGGCGACCGTTGTGAAAGCGCGGGCTCTGTCATGGTCGCT
ATGCAAGTGAGCAGGTATCGACAGATGATTCGTCGAAAGGTGCTTAGAGG
TCGCAATCGCGGATGGCGCCGTCTGTGA
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Coding sequence (CDS) from alignment at ScGOVlb_3404:5671602..5672629+

>Gvermi12503.t1 ID=Gvermi12503.t1|Name=Gvermi12503.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=CDS|length=918bp|location=Sequence derived from alignment at ScGOVlb_3404:5671602..5672629+ (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
ATGAAGTGCGCGTCCGTCCTGAGCGCCACGACGCTCGCGCTGCTCGCTCT
CCTCATTGCGCCGCACGCCCTTGCGCAGCAGGTCGTCTTCGCAGAGGCTG
ACGCTTCCTCTCAAGCGCCCGTCGTCGTCTCCTCGCACCAATCAGACCCC
GCTTCCAACGCCGCCGCCCAGCCGCGCCGTGAGGGTCCCGTCATCCACCA
CGGCCGCGCCGCAAACCTTCCCCGCGATGATGAGCAACCGCCCGCCGCGC
CCACCATCGTCGGCGGTAAGAGAGTCCCCGCCAAGCTGCGCAAGCACCTC
GCCCGCGTCGTCATTGAAACCTCCGACGGGGGAATCGTCTCCTGTTCCGG
CTCCGTGCTGTCGCCCACCTTCGTGCTCTCCGCCGCGCACTGTTTCGTCG
ACCCGGGCCGCATCGACGTCTCGCGCTCCTACGTGCTCGTGGCCGAGCGC
ACGACCAACATCAGGTACTTTTCCTCGCCGCCGAACAAGATCTTCATGCG
AAACGTGTTTGTGCACCGTCGCTACCGAGACAACGGCTTCTTCGCGGACG
ATGTGGCGCTCGTCGAGCTGCAGCAACCCATTCCGCAGCGCTTTCTGAGC
CCCGTTTCGCTCCGCTGGTCTGTGTGCGATGATTTTGCGGGCTTGCCTGT
CGCAAACAATCGCCGCCGCGAGATGTGCTACACCTCGTTGGATTTCCCGG
ATCGGGGGAGGACTGGTACGTGCTTCGGGGATTCGGGCGGCCCCATCATG
AAACGGGAGGGCGGCCAGTTCAAGCAGGTCGGTATTACGAGCTATTTCGT
GGGCGACCGTTGTGAAAGCGCGGGCTCTGTCATGGTCGCTATGCAAGTGA
GCAGGTATCGACAGATGATTCGTCGAAAGGTGCTTAGAGGTCGCAATCGC
GGATGGCGCCGTCTGTGA
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