Gvermi12427.t1 (mRNA) Gracilaria vermiculophylla HapMaleFtJ_2017 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGvermi12427.t1
Unique NameGvermi12427.t1
TypemRNA
OrganismGracilaria vermiculophylla HapMaleFtJ_2017 male (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
Sequence length281
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
ScGOVlb_3404contigScGOVlb_3404:4688970..4689812 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria vermiculophylla HapMaleFtJ_2017 male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog1150469.RSPPHO_02653
Preferred namelpxC
PFAMsLpxC
Max annot lvl204441|Rhodospirillales
KEGG rclassRC00166,RC00300
KEGG koko:K02535
KEGG ReactionR04587
KEGG Pathwayko00540,ko01100,map00540,map01100
KEGG ModuleM00060
Evalue3e-46
EggNOG OGsCOG0774@1|root,COG0774@2|Bacteria,1MV6T@1224|Proteobacteria,2TUHH@28211|Alphaproteobacteria,2JPDC@204441|Rhodospirillales
EC3.5.1.108
DescriptionCatalyzes the hydrolysis of UDP-3-O-myristoyl-N- acetylglucosamine to form UDP-3-O-myristoylglucosamine and acetate, the committed step in lipid A biosynthesis
COG categoryM
BRITEko00000,ko00001,ko00002,ko01000,ko01005
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Gvermi12427Gvermi12427Gracilaria vermiculophylla HapMaleFtJ_2017 malegeneScGOVlb_3404 4688970..4689812 -


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi12427.t1.stop1Gvermi12427.t1.stop1Gracilaria vermiculophylla HapMaleFtJ_2017 malestop_codonScGOVlb_3404 4688970..4688972 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi12427.t1.CDS1Gvermi12427.t1.CDS1Gracilaria vermiculophylla HapMaleFtJ_2017 maleCDSScGOVlb_3404 4688970..4689812 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi12427.t1.exon1Gvermi12427.t1.exon1Gracilaria vermiculophylla HapMaleFtJ_2017 maleexonScGOVlb_3404 4688970..4689812 -


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi12427.t1.start1Gvermi12427.t1.start1Gracilaria vermiculophylla HapMaleFtJ_2017 malestart_codonScGOVlb_3404 4689810..4689812 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi12427.t1Gvermi12427.t1Gracilaria vermiculophylla HapMaleFtJ_2017 malepolypeptideScGOVlb_3404 4688970..4689812 -


Sequences
The following sequences are available for this feature:

mRNA sequence

>Gvermi12427.t1 ID=Gvermi12427.t1|Name=Gvermi12427.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=281bp
MRFVSTALHTGAPSVLTLRPAPANAGITFHHRNDCIPATFENVADATLCT
TLRAPSSSATTVSSVEHLLAALSAAGVDNVQAHTSCAELPIMDGSAWAFT
LALKGQVVPLNAAKRLTIVRRAVRVDSRDGKAHASLWPLPGVRSLDVEVV
TFVHGMSRSNLGTQRVAFTLSEGAFRRHVARARTFWSRTELERWRKKGLI
LGGGMDNSLLYEEGGKVLNSDGLRYSDEICRHLAVDCIGDLRLGGVVLGR
YTAVRPEHWLNVELLRKLYRNPENYVLEGD*
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spliced messenger RNA

>Gvermi12427.t1 ID=Gvermi12427.t1|Name=Gvermi12427.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=843bp|location=Sequence derived from alignment at ScGOVlb_3404:4688970..4689812- (Gracilaria vermiculophylla HapMaleFtJ_2017 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGCGCTTCGTAAGCACTGCGCTTCATACAGGCGCACCTTCGGTTTTAAC
CTTGCGCCCAGCTCCAGCAAACGCCGGGATCACCTTTCATCACCGCAATG
ACTGCATCCCCGCCACCTTTGAAAACGTAGCAGATGCTACATTGTGCACA
ACGTTGCGCGCGCCGTCCTCATCTGCAACAACCGTCTCAAGCGTAGAACA
TCTGCTTGCAGCCTTATCTGCAGCTGGAGTGGACAACGTACAAGCTCATA
CGTCGTGCGCAGAACTGCCAATCATGGACGGCTCGGCATGGGCGTTCACA
CTCGCACTGAAAGGACAGGTCGTACCCTTGAATGCGGCAAAGCGCCTAAC
AATTGTACGGCGAGCGGTACGCGTTGACTCAAGAGACGGGAAGGCACACG
CCTCGCTCTGGCCACTTCCTGGAGTAAGATCGTTAGACGTGGAGGTAGTG
ACGTTTGTCCATGGCATGTCGCGTTCAAACCTCGGTACGCAGAGAGTGGC
TTTCACGCTCTCCGAGGGAGCGTTCCGAAGGCACGTGGCTCGGGCTCGAA
CTTTCTGGTCCAGGACTGAGCTGGAGCGATGGCGCAAGAAAGGACTGATC
CTGGGAGGTGGAATGGACAACTCTCTCTTGTACGAAGAAGGAGGGAAAGT
GCTCAACTCAGATGGGCTGCGGTACTCGGACGAGATCTGTCGTCATCTTG
CAGTGGATTGCATCGGAGACTTGAGATTAGGTGGTGTCGTGTTGGGTAGA
TATACAGCGGTGAGACCGGAGCATTGGCTAAACGTTGAGTTGTTGAGAAA
GCTTTACAGAAATCCGGAGAACTATGTCCTAGAGGGTGACTGA
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protein sequence of Gvermi12427.t1

>Gvermi12427.t1 ID=Gvermi12427.t1|Name=Gvermi12427.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=polypeptide|length=281bp
MRFVSTALHTGAPSVLTLRPAPANAGITFHHRNDCIPATFENVADATLCT
TLRAPSSSATTVSSVEHLLAALSAAGVDNVQAHTSCAELPIMDGSAWAFT
LALKGQVVPLNAAKRLTIVRRAVRVDSRDGKAHASLWPLPGVRSLDVEVV
TFVHGMSRSNLGTQRVAFTLSEGAFRRHVARARTFWSRTELERWRKKGLI
LGGGMDNSLLYEEGGKVLNSDGLRYSDEICRHLAVDCIGDLRLGGVVLGR
YTAVRPEHWLNVELLRKLYRNPENYVLEGD*
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mRNA from alignment at ScGOVlb_3404:4688970..4689812-

Legend: polypeptideCDSexonstart_codonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Gvermi12427.t1 ID=Gvermi12427.t1|Name=Gvermi12427.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=843bp|location=Sequence derived from alignment at ScGOVlb_3404:4688970..4689812- (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
ATGCGCTTCGTAAGCACTGCGCTTCATACAGGCGCACCTTCGGTTTTAAC
CTTGCGCCCAGCTCCAGCAAACGCCGGGATCACCTTTCATCACCGCAATG
ACTGCATCCCCGCCACCTTTGAAAACGTAGCAGATGCTACATTGTGCACA
ACGTTGCGCGCGCCGTCCTCATCTGCAACAACCGTCTCAAGCGTAGAACA
TCTGCTTGCAGCCTTATCTGCAGCTGGAGTGGACAACGTACAAGCTCATA
CGTCGTGCGCAGAACTGCCAATCATGGACGGCTCGGCATGGGCGTTCACA
CTCGCACTGAAAGGACAGGTCGTACCCTTGAATGCGGCAAAGCGCCTAAC
AATTGTACGGCGAGCGGTACGCGTTGACTCAAGAGACGGGAAGGCACACG
CCTCGCTCTGGCCACTTCCTGGAGTAAGATCGTTAGACGTGGAGGTAGTG
ACGTTTGTCCATGGCATGTCGCGTTCAAACCTCGGTACGCAGAGAGTGGC
TTTCACGCTCTCCGAGGGAGCGTTCCGAAGGCACGTGGCTCGGGCTCGAA
CTTTCTGGTCCAGGACTGAGCTGGAGCGATGGCGCAAGAAAGGACTGATC
CTGGGAGGTGGAATGGACAACTCTCTCTTGTACGAAGAAGGAGGGAAAGT
GCTCAACTCAGATGGGCTGCGGTACTCGGACGAGATCTGTCGTCATCTTG
CAGTGGATTGCATCGGAGACTTGAGATTAGGTGGTGTCGTGTTGGGTAGA
TATACAGCGGTGAGACCGGAGCATTGGCTAAACGTTGAGTTGTTGAGAAA
GCTTTACAGAAATCCGGAGAACTATGTCCTAGAGGGTGACTGA
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Coding sequence (CDS) from alignment at ScGOVlb_3404:4688970..4689812-

>Gvermi12427.t1 ID=Gvermi12427.t1|Name=Gvermi12427.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=CDS|length=843bp|location=Sequence derived from alignment at ScGOVlb_3404:4688970..4689812- (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
ATGCGCTTCGTAAGCACTGCGCTTCATACAGGCGCACCTTCGGTTTTAAC
CTTGCGCCCAGCTCCAGCAAACGCCGGGATCACCTTTCATCACCGCAATG
ACTGCATCCCCGCCACCTTTGAAAACGTAGCAGATGCTACATTGTGCACA
ACGTTGCGCGCGCCGTCCTCATCTGCAACAACCGTCTCAAGCGTAGAACA
TCTGCTTGCAGCCTTATCTGCAGCTGGAGTGGACAACGTACAAGCTCATA
CGTCGTGCGCAGAACTGCCAATCATGGACGGCTCGGCATGGGCGTTCACA
CTCGCACTGAAAGGACAGGTCGTACCCTTGAATGCGGCAAAGCGCCTAAC
AATTGTACGGCGAGCGGTACGCGTTGACTCAAGAGACGGGAAGGCACACG
CCTCGCTCTGGCCACTTCCTGGAGTAAGATCGTTAGACGTGGAGGTAGTG
ACGTTTGTCCATGGCATGTCGCGTTCAAACCTCGGTACGCAGAGAGTGGC
TTTCACGCTCTCCGAGGGAGCGTTCCGAAGGCACGTGGCTCGGGCTCGAA
CTTTCTGGTCCAGGACTGAGCTGGAGCGATGGCGCAAGAAAGGACTGATC
CTGGGAGGTGGAATGGACAACTCTCTCTTGTACGAAGAAGGAGGGAAAGT
GCTCAACTCAGATGGGCTGCGGTACTCGGACGAGATCTGTCGTCATCTTG
CAGTGGATTGCATCGGAGACTTGAGATTAGGTGGTGTCGTGTTGGGTAGA
TATACAGCGGTGAGACCGGAGCATTGGCTAAACGTTGAGTTGTTGAGAAA
GCTTTACAGAAATCCGGAGAACTATGTCCTAGAGGGTGACTGA
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