Gvermi12469.t1 (mRNA) Gracilaria vermiculophylla HapMaleFtJ_2017 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGvermi12469.t1
Unique NameGvermi12469.t1
TypemRNA
OrganismGracilaria vermiculophylla HapMaleFtJ_2017 male (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
Sequence length561
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
ScGOVlb_3404contigScGOVlb_3404:4955475..4957269 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria vermiculophylla HapMaleFtJ_2017 male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog130081.XP_005707028.1
Preferred namepfk
PFAMsPFK
Max annot lvl2759|Eukaryota
KEGG rclassRC00002,RC00017
KEGG koko:K00850
KEGG ReactionR00756,R03236,R03237,R03238,R03239,R04779
KEGG Pathwayko00010,ko00030,ko00051,ko00052,ko00680,ko01100,ko01110,ko01120,ko01130,ko01200,ko01230,ko03018,ko04152,ko05230,map00010,map00030,map00051,map00052,map00680,map01100,map01110,map01120,map01130,map01200,map01230,map03018,map04152,map05230
KEGG ModuleM00001,M00345
GOsGO:0000166,GO:0003674,GO:0003824,GO:0003872,GO:0005488,GO:0005524,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005777,GO:0005975,GO:0006082,GO:0006090,GO:0006091,GO:0006096,GO:0006139,GO:0006163,GO:0006164,GO:0006165,GO:0006725,GO:0006732,GO:0006733,GO:0006753,GO:0006754,GO:0006757,GO:0006793,GO:0006796,GO:0006807,GO:0008144,GO:0008150,GO:0008152,GO:0008443,GO:0009056,GO:0009058,GO:0009108,GO:0009117,GO:0009123,GO:0009124,GO:0009126,GO:0009127,GO:0009132,GO:0009135,GO:0009141,GO:0009142,GO:0009144,GO:0009145,GO:0009150,GO:0009152,GO:0009156,GO:0009161,GO:0009165,GO:0009166,GO:0009167,GO:0009168,GO:0009179,GO:0009185,GO:0009199,GO:0009201,GO:0009205,GO:0009206,GO:0009259,GO:0009260,GO:0009987,GO:0016052,GO:0016053,GO:0016301,GO:0016310,GO:0016740,GO:0016772,GO:0016773,GO:0017076,GO:0017144,GO:0018130,GO:0019200,GO:0019359,GO:0019362,GO:0019363,GO:0019438,GO:0019439,GO:0019637,GO:0019693,GO:0019752,GO:0020015,GO:0030554,GO:0032553,GO:0032555,GO:0032559,GO:0032787,GO:0034404,GO:0034641,GO:0034654,GO:0034655,GO:0035639,GO:0036094,GO:0042579,GO:0042866,GO:0043167,GO:0043168,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043436,GO:0044237,GO:0044238,GO:0044248,GO:0044249,GO:0044262,GO:0044270,GO:0044271,GO:0044281,GO:0044283,GO:0044424,GO:0044444,GO:0044464,GO:0046031,GO:0046034,GO:0046390,GO:0046394,GO:0046434,GO:0046483,GO:0046496,GO:0046700,GO:0046835,GO:0046939,GO:0051186,GO:0051188,GO:0055086,GO:0061615,GO:0071704,GO:0072330,GO:0072521,GO:0072522,GO:0072524,GO:0072525,GO:0090407,GO:0097159,GO:0097367,GO:1901135,GO:1901137,GO:1901265,GO:1901292,GO:1901293,GO:1901360,GO:1901361,GO:1901362,GO:1901363,GO:1901564,GO:1901566,GO:1901575,GO:1901576
Evalue2.94e-187
EggNOG OGsCOG0205@1|root,KOG2440@2759|Eukaryota
EC2.7.1.11
Description6-phosphofructokinase activity
COG categoryG
BRITEko00000,ko00001,ko00002,ko01000,ko01009,ko03019
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Gvermi12469Gvermi12469Gracilaria vermiculophylla HapMaleFtJ_2017 malegeneScGOVlb_3404 4955475..4957269 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi12469.t1Gvermi12469.t1Gracilaria vermiculophylla HapMaleFtJ_2017 malepolypeptideScGOVlb_3404 4955475..4957269 +


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi12469.t1.start1Gvermi12469.t1.start1Gracilaria vermiculophylla HapMaleFtJ_2017 malestart_codonScGOVlb_3404 4955475..4955477 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi12469.t1.CDS1Gvermi12469.t1.CDS1Gracilaria vermiculophylla HapMaleFtJ_2017 maleCDSScGOVlb_3404 4955475..4956930 +
Gvermi12469.t1.CDS2Gvermi12469.t1.CDS2Gracilaria vermiculophylla HapMaleFtJ_2017 maleCDSScGOVlb_3404 4957043..4957269 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi12469.t1.exon1Gvermi12469.t1.exon1Gracilaria vermiculophylla HapMaleFtJ_2017 maleexonScGOVlb_3404 4955475..4956930 +
Gvermi12469.t1.exon2Gvermi12469.t1.exon2Gracilaria vermiculophylla HapMaleFtJ_2017 maleexonScGOVlb_3404 4957043..4957269 +


The following intron feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi12469.t1.intron1Gvermi12469.t1.intron1Gracilaria vermiculophylla HapMaleFtJ_2017 maleintronScGOVlb_3404 4956931..4957042 +


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi12469.t1.stop1Gvermi12469.t1.stop1Gracilaria vermiculophylla HapMaleFtJ_2017 malestop_codonScGOVlb_3404 4957267..4957269 +


Sequences
The following sequences are available for this feature:

mRNA sequence

>Gvermi12469.t1 ID=Gvermi12469.t1|Name=Gvermi12469.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=561bp
MSRPPTSAAPIVRTRTLDSVVIDPDDPLQSRQDLPKVIHHARVTYDNANT
PITSPRLDRFSKIVLSRPCRGLQPARVSDWTPVGSFPSPLQNNPAQLNLG
LSFVGSRETILVDIISDAENTTMSREFVRAGPRSELAFHPANQARPCIVT
CGGLCPGLNSVIRELVITLKKMYRVPRVDGIPFGYRGFYSTHLSITELTE
QRVMDIHHEGGSIIGSSRGGHDTKRICDSIVAMGYNQIFIIGGDGTHRGA
VKIFDELKRRRAMVSVVGIPKTIDNDIALIDKSFGFDTAVEEAQRSIKCA
KIEAKSAINGIGLVKLMGRHSGQIAMFATLASRDVDCCLIPEVRFELDGK
SGLFQYVEDTLRSKAHMVIVVAEGAGLDLIEREIPTTGVDASGNKKLSDV
GLWLKRKIDGEFKNRGREINVKLIDPTYEIRSVPANASDNLHCSLLAQSA
VHGAMHGFSGFSVGLINTHFVLIPMEEICRRGRTRVDVKSRMWHRVIATT
MQPSLSGQLPVSQSLMEALDGSLRMGNSTEPLIVDSKQQQPTVFEPEDEW
EQDRRDAAGS*
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spliced messenger RNA

>Gvermi12469.t1 ID=Gvermi12469.t1|Name=Gvermi12469.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=1683bp|location=Sequence derived from alignment at ScGOVlb_3404:4955475..4957269+ (Gracilaria vermiculophylla HapMaleFtJ_2017 male)|Notes=Excludes all bases but those of type(s): exon.  
atgtcgcgcccgcccacgtccgccgcccccatcgtgcgcacccgcaccct
cgactccgtcgtcatcgaccccgacgacccgctgcagtcgcgccaggacc
tgcccaaggtcatccaccatgcgcgcgtcacctacgacaacgccaacacc
cccatcacctcgccgcgcctcgaccgcttctccaagatcgtgctgtcgcg
cccgtgccgcggcctgcagcccgcccgcgtctccgactggacgcccgtcg
gctccttcccgtccccgctgcAGAACAACCCCGCGCAGCTCAACCTGGGC
CTCAGCTTCGTCGGCTCGCGCGAGACCATCCTCGTCGACATCATCTCCGA
CGCCGAGAACACCACGATGAGCCGCGAGTTTGTGCGCGCCGGCCCGCGCA
GCGAGCTCGCCTTCCACCCGGCCAACCAGGCGCGCCCGTGCATCGTCACC
TGCGGCGGGCTGTGCCCGGGGCTCAACTCGGTCATCCGCGAGCTCGTCAT
CACGCTCAAGAAGATGTACCGCGTGCCGCGCGTCGACGGCATCCCGTTCG
GCTACCGCGGCTTCTACAGCACGCACCTGTCCATCACCGAGCTCACCGAG
CAGCGTGTGATGGACATCCACCACGAGGGCGGCTCCATCATCGGCTCCTC
GCGCGGCGGCCACGACACCAAGCGCATCTGCGACAGCATCGTCGCCATGG
GCTACAACCAGATTTTCATCATTGGCGGCGACGGCACGCACCGCGGCGCC
GTCAAGATCTTCGACGAGCTCAAGCGCCGCCGCGCCATGGTGAGCGTGGT
CGGCATCCCCAAGACGATCGACAACGACATTGCGCTCATCGACAAGAGCT
TCGGCTTCGACACCGCCGTGGAGGAGGCGCAGCGCAGCATCAAGTGCGCC
AAGATCGAGGCCAAGAGCGCCATCAACGGCATCGGGCTGGTCAAGCTCAT
GGGGCGCCACTCGGGGCAGATTGCCATGTTTGCCACGCTGGCGTCGCGCG
ACGTGGACTGCTGCCTCATCCCGGAGGTGCGCTTCGAGCTGGACGGCAAG
TCGGGGCTGTTCCAGTACGTGGAGGACACGCTGCGCTCCAAGGCGCACAT
GGTGATTGTGGTGGCCGAGGGCGCCGGGCTGGACCTCATTGAGCGCGAGA
TTCCGACGACGGGCGTGGACGCGTCGGGCAACAAGAAACTGTCCGACGTG
GGGCTGTGGCTCAAGCGCAAGATTGACGGCGAGTTCAAGAACCGCGGCCG
CGAGATCAACGTGAAGCTGATCGACCCCACGTACGAGATTCGCAGCGTTC
CGGCCAACGCCAGCGACAACCTGCACTGCAGCCTGCTGGCGCAGTCTGCC
GTGCACGGCGCCATGCACGGCTTTTCGGGCTTCTCGGTAGGCCTCATCAA
CACGCACTTTGTTCTGATCCCCATGGAGGAGATATGCCGCCGGGGGCGCA
CGAGAGTTGACGTGAAGAGTAGAATGTGGCACCGCGTGATCGCGACGACG
ATGCAGCCGAGTTTGTCGGGACAGCTGCCCGTGTCGCAAAGCCTGATGGA
GGCGCTGGACGGGTCGCTGAGGATGGGCAACTCGACGGAGCCGCTGATAG
TGGACAGCAAGCAGCAGCAACCGACCGTGTTTGAGCCCGAAGACGAATGG
GAGCAGGACAGGCGCGACGCGGCAGGGTCGTAG
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protein sequence of Gvermi12469.t1

>Gvermi12469.t1 ID=Gvermi12469.t1|Name=Gvermi12469.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=polypeptide|length=561bp
MSRPPTSAAPIVRTRTLDSVVIDPDDPLQSRQDLPKVIHHARVTYDNANT
PITSPRLDRFSKIVLSRPCRGLQPARVSDWTPVGSFPSPLQNNPAQLNLG
LSFVGSRETILVDIISDAENTTMSREFVRAGPRSELAFHPANQARPCIVT
CGGLCPGLNSVIRELVITLKKMYRVPRVDGIPFGYRGFYSTHLSITELTE
QRVMDIHHEGGSIIGSSRGGHDTKRICDSIVAMGYNQIFIIGGDGTHRGA
VKIFDELKRRRAMVSVVGIPKTIDNDIALIDKSFGFDTAVEEAQRSIKCA
KIEAKSAINGIGLVKLMGRHSGQIAMFATLASRDVDCCLIPEVRFELDGK
SGLFQYVEDTLRSKAHMVIVVAEGAGLDLIEREIPTTGVDASGNKKLSDV
GLWLKRKIDGEFKNRGREINVKLIDPTYEIRSVPANASDNLHCSLLAQSA
VHGAMHGFSGFSVGLINTHFVLIPMEEICRRGRTRVDVKSRMWHRVIATT
MQPSLSGQLPVSQSLMEALDGSLRMGNSTEPLIVDSKQQQPTVFEPEDEW
EQDRRDAAGS*
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mRNA from alignment at ScGOVlb_3404:4955475..4957269+

Legend: polypeptidestart_codonCDSexonintronstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Gvermi12469.t1 ID=Gvermi12469.t1|Name=Gvermi12469.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=1795bp|location=Sequence derived from alignment at ScGOVlb_3404:4955475..4957269+ (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
atgtcgcgcccgcccacgtccgccgcccccatcgtgcgcacccgcaccct
cgactccgtcgtcatcgaccccgacgacccgctgcagtcgcgccaggacc
tgcccaaggtcatccaccatgcgcgcgtcacctacgacaacgccaacacc
cccatcacctcgccgcgcctcgaccgcttctccaagatcgtgctgtcgcg
cccgtgccgcggcctgcagcccgcccgcgtctccgactggacgcccgtcg
gctccttcccgtccccgctgcAGAACAACCCCGCGCAGCTCAACCTGGGC
CTCAGCTTCGTCGGCTCGCGCGAGACCATCCTCGTCGACATCATCTCCGA
CGCCGAGAACACCACGATGAGCCGCGAGTTTGTGCGCGCCGGCCCGCGCA
GCGAGCTCGCCTTCCACCCGGCCAACCAGGCGCGCCCGTGCATCGTCACC
TGCGGCGGGCTGTGCCCGGGGCTCAACTCGGTCATCCGCGAGCTCGTCAT
CACGCTCAAGAAGATGTACCGCGTGCCGCGCGTCGACGGCATCCCGTTCG
GCTACCGCGGCTTCTACAGCACGCACCTGTCCATCACCGAGCTCACCGAG
CAGCGTGTGATGGACATCCACCACGAGGGCGGCTCCATCATCGGCTCCTC
GCGCGGCGGCCACGACACCAAGCGCATCTGCGACAGCATCGTCGCCATGG
GCTACAACCAGATTTTCATCATTGGCGGCGACGGCACGCACCGCGGCGCC
GTCAAGATCTTCGACGAGCTCAAGCGCCGCCGCGCCATGGTGAGCGTGGT
CGGCATCCCCAAGACGATCGACAACGACATTGCGCTCATCGACAAGAGCT
TCGGCTTCGACACCGCCGTGGAGGAGGCGCAGCGCAGCATCAAGTGCGCC
AAGATCGAGGCCAAGAGCGCCATCAACGGCATCGGGCTGGTCAAGCTCAT
GGGGCGCCACTCGGGGCAGATTGCCATGTTTGCCACGCTGGCGTCGCGCG
ACGTGGACTGCTGCCTCATCCCGGAGGTGCGCTTCGAGCTGGACGGCAAG
TCGGGGCTGTTCCAGTACGTGGAGGACACGCTGCGCTCCAAGGCGCACAT
GGTGATTGTGGTGGCCGAGGGCGCCGGGCTGGACCTCATTGAGCGCGAGA
TTCCGACGACGGGCGTGGACGCGTCGGGCAACAAGAAACTGTCCGACGTG
GGGCTGTGGCTCAAGCGCAAGATTGACGGCGAGTTCAAGAACCGCGGCCG
CGAGATCAACGTGAAGCTGATCGACCCCACGTACGAGATTCGCAGCGTTC
CGGCCAACGCCAGCGACAACCTGCACTGCAGCCTGCTGGCGCAGTCTGCC
GTGCACGGCGCCATGCACGGCTTTTCGGGCTTCTCGGTAGGCCTCATCAA
CACGCACTTTGTTCTGATCCCCATGGAGGAGATATGCCGCCGGGGGCGCA
CGAGAGGTACGTTGCACGGCTGCAGAgcgcggagcggcgcagcgcggagc
ggcgcagcgcggAGGCGCGTTCTAACGGCGTTGTGCGTGTGACATTGTAC
GCGGGCGCGCGCGCGCAGTTGACGTGAAGAGTAGAATGTGGCACCGCGTG
ATCGCGACGACGATGCAGCCGAGTTTGTCGGGACAGCTGCCCGTGTCGCA
AAGCCTGATGGAGGCGCTGGACGGGTCGCTGAGGATGGGCAACTCGACGG
AGCCGCTGATAGTGGACAGCAAGCAGCAGCAACCGACCGTGTTTGAGCCC
GAAGACGAATGGGAGCAGGACAGGCGCGACGCGGCAGGGTCGTAG
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Coding sequence (CDS) from alignment at ScGOVlb_3404:4955475..4957269+

>Gvermi12469.t1 ID=Gvermi12469.t1|Name=Gvermi12469.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=CDS|length=1683bp|location=Sequence derived from alignment at ScGOVlb_3404:4955475..4957269+ (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
atgtcgcgcccgcccacgtccgccgcccccatcgtgcgcacccgcaccct
cgactccgtcgtcatcgaccccgacgacccgctgcagtcgcgccaggacc
tgcccaaggtcatccaccatgcgcgcgtcacctacgacaacgccaacacc
cccatcacctcgccgcgcctcgaccgcttctccaagatcgtgctgtcgcg
cccgtgccgcggcctgcagcccgcccgcgtctccgactggacgcccgtcg
gctccttcccgtccccgctgcAGAACAACCCCGCGCAGCTCAACCTGGGC
CTCAGCTTCGTCGGCTCGCGCGAGACCATCCTCGTCGACATCATCTCCGA
CGCCGAGAACACCACGATGAGCCGCGAGTTTGTGCGCGCCGGCCCGCGCA
GCGAGCTCGCCTTCCACCCGGCCAACCAGGCGCGCCCGTGCATCGTCACC
TGCGGCGGGCTGTGCCCGGGGCTCAACTCGGTCATCCGCGAGCTCGTCAT
CACGCTCAAGAAGATGTACCGCGTGCCGCGCGTCGACGGCATCCCGTTCG
GCTACCGCGGCTTCTACAGCACGCACCTGTCCATCACCGAGCTCACCGAG
CAGCGTGTGATGGACATCCACCACGAGGGCGGCTCCATCATCGGCTCCTC
GCGCGGCGGCCACGACACCAAGCGCATCTGCGACAGCATCGTCGCCATGG
GCTACAACCAGATTTTCATCATTGGCGGCGACGGCACGCACCGCGGCGCC
GTCAAGATCTTCGACGAGCTCAAGCGCCGCCGCGCCATGGTGAGCGTGGT
CGGCATCCCCAAGACGATCGACAACGACATTGCGCTCATCGACAAGAGCT
TCGGCTTCGACACCGCCGTGGAGGAGGCGCAGCGCAGCATCAAGTGCGCC
AAGATCGAGGCCAAGAGCGCCATCAACGGCATCGGGCTGGTCAAGCTCAT
GGGGCGCCACTCGGGGCAGATTGCCATGTTTGCCACGCTGGCGTCGCGCG
ACGTGGACTGCTGCCTCATCCCGGAGGTGCGCTTCGAGCTGGACGGCAAG
TCGGGGCTGTTCCAGTACGTGGAGGACACGCTGCGCTCCAAGGCGCACAT
GGTGATTGTGGTGGCCGAGGGCGCCGGGCTGGACCTCATTGAGCGCGAGA
TTCCGACGACGGGCGTGGACGCGTCGGGCAACAAGAAACTGTCCGACGTG
GGGCTGTGGCTCAAGCGCAAGATTGACGGCGAGTTCAAGAACCGCGGCCG
CGAGATCAACGTGAAGCTGATCGACCCCACGTACGAGATTCGCAGCGTTC
CGGCCAACGCCAGCGACAACCTGCACTGCAGCCTGCTGGCGCAGTCTGCC
GTGCACGGCGCCATGCACGGCTTTTCGGGCTTCTCGGTAGGCCTCATCAA
CACGCACTTTGTTCTGATCCCCATGGAGGAGATATGCCGCCGGGGGCGCA
CGAGAGTTGACGTGAAGAGTAGAATGTGGCACCGCGTGATCGCGACGACG
ATGCAGCCGAGTTTGTCGGGACAGCTGCCCGTGTCGCAAAGCCTGATGGA
GGCGCTGGACGGGTCGCTGAGGATGGGCAACTCGACGGAGCCGCTGATAG
TGGACAGCAAGCAGCAGCAACCGACCGTGTTTGAGCCCGAAGACGAATGG
GAGCAGGACAGGCGCGACGCGGCAGGGTCGTAG
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