Gvermi12203.t1 (mRNA) Gracilaria vermiculophylla HapMaleFtJ_2017 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGvermi12203.t1
Unique NameGvermi12203.t1
TypemRNA
OrganismGracilaria vermiculophylla HapMaleFtJ_2017 male (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
Sequence length368
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
ScGOVlb_3404contigScGOVlb_3404:3839691..3840985 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria vermiculophylla HapMaleFtJ_2017 male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog130081.XP_005706493.1
Preferred nameDRG2
PFAMsMMR_HSR1,MMR_HSR1_Xtn,TGS
Max annot lvl2759|Eukaryota
KEGG koko:K06944
GOsGO:0000166,GO:0001882,GO:0001883,GO:0002181,GO:0003674,GO:0003824,GO:0003924,GO:0005488,GO:0005515,GO:0005525,GO:0005543,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005654,GO:0005737,GO:0005829,GO:0006412,GO:0006518,GO:0006807,GO:0007154,GO:0007165,GO:0008150,GO:0008152,GO:0008289,GO:0009058,GO:0009059,GO:0009987,GO:0010467,GO:0010646,GO:0010647,GO:0016462,GO:0016787,GO:0016817,GO:0016818,GO:0017076,GO:0017111,GO:0019001,GO:0019003,GO:0019538,GO:0023052,GO:0031410,GO:0031974,GO:0031981,GO:0031982,GO:0032101,GO:0032103,GO:0032104,GO:0032106,GO:0032107,GO:0032109,GO:0032549,GO:0032550,GO:0032553,GO:0032555,GO:0032561,GO:0034641,GO:0034645,GO:0035639,GO:0036094,GO:0043043,GO:0043167,GO:0043168,GO:0043170,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043233,GO:0043603,GO:0043604,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044267,GO:0044271,GO:0044422,GO:0044424,GO:0044428,GO:0044444,GO:0044446,GO:0044464,GO:0048518,GO:0048522,GO:0048583,GO:0048584,GO:0050789,GO:0050794,GO:0050896,GO:0051716,GO:0065007,GO:0070013,GO:0070300,GO:0071704,GO:0080134,GO:0080135,GO:0097159,GO:0097367,GO:0097708,GO:1901265,GO:1901363,GO:1901564,GO:1901566,GO:1901576,GO:1903832,GO:1903833
Evalue5.37e-195
EggNOG OGsCOG1163@1|root,KOG1486@2759|Eukaryota
DescriptionGTP binding
COG categoryS
BRITEko00000
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Gvermi12203Gvermi12203Gracilaria vermiculophylla HapMaleFtJ_2017 malegeneScGOVlb_3404 3839691..3840985 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi12203.t1Gvermi12203.t1Gracilaria vermiculophylla HapMaleFtJ_2017 malepolypeptideScGOVlb_3404 3839691..3840985 +


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi12203.t1.start1Gvermi12203.t1.start1Gracilaria vermiculophylla HapMaleFtJ_2017 malestart_codonScGOVlb_3404 3839691..3839693 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi12203.t1.CDS1Gvermi12203.t1.CDS1Gracilaria vermiculophylla HapMaleFtJ_2017 maleCDSScGOVlb_3404 3839691..3839765 +
Gvermi12203.t1.CDS2Gvermi12203.t1.CDS2Gracilaria vermiculophylla HapMaleFtJ_2017 maleCDSScGOVlb_3404 3839864..3840065 +
Gvermi12203.t1.CDS3Gvermi12203.t1.CDS3Gracilaria vermiculophylla HapMaleFtJ_2017 maleCDSScGOVlb_3404 3840159..3840985 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi12203.t1.exon1Gvermi12203.t1.exon1Gracilaria vermiculophylla HapMaleFtJ_2017 maleexonScGOVlb_3404 3839691..3839765 +
Gvermi12203.t1.exon2Gvermi12203.t1.exon2Gracilaria vermiculophylla HapMaleFtJ_2017 maleexonScGOVlb_3404 3839864..3840065 +
Gvermi12203.t1.exon3Gvermi12203.t1.exon3Gracilaria vermiculophylla HapMaleFtJ_2017 maleexonScGOVlb_3404 3840159..3840985 +


The following intron feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi12203.t1.intron1Gvermi12203.t1.intron1Gracilaria vermiculophylla HapMaleFtJ_2017 maleintronScGOVlb_3404 3839766..3839863 +
Gvermi12203.t1.intron2Gvermi12203.t1.intron2Gracilaria vermiculophylla HapMaleFtJ_2017 maleintronScGOVlb_3404 3840066..3840158 +


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi12203.t1.stop1Gvermi12203.t1.stop1Gracilaria vermiculophylla HapMaleFtJ_2017 malestop_codonScGOVlb_3404 3840983..3840985 +


Sequences
The following sequences are available for this feature:

mRNA sequence

>Gvermi12203.t1 ID=Gvermi12203.t1|Name=Gvermi12203.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=368bp
MGVQERIKDIEAEMARTQKNKATEGHLGILKAKLAKLRREALDGPKTGGN
SADRGFEVVKHGDARVAVIGFPSTGKSTFLSTVTETKSEAASYEFTTLTC
VPGILEHKGATIQLLDLPGIIEGAAQGKGRGRQVIAVARSADLILLMLDA
TKSDVQRSLLENELESVGIRLNKRPPDVYFRPKQTGGIAFTATVPLTKIT
EKIAMSILKEYKIHNAELLVREDINVDELIDVLDGKRQYIRCLYLYSKID
AVSLEEVDRLAREPNSVVMSCYLKLNLDYVVEQIWEYLQLCRIYTKKQGS
PPDFDEPIVLRGGSKVEDACRAIHRSLADPSQFRYALVWGKSTKHDPQRV
GLSHNLQDEDVVQIVTK*
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spliced messenger RNA

>Gvermi12203.t1 ID=Gvermi12203.t1|Name=Gvermi12203.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=1104bp|location=Sequence derived from alignment at ScGOVlb_3404:3839691..3840985+ (Gracilaria vermiculophylla HapMaleFtJ_2017 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGGGTGTACAAGAAAGAATCAAAGACATTGAGGCCGAAATGGCGCGTAC
TCAGAAGAACAAGGCCACTGAGGGACATCTAGGAATCCTTAAAGCAAAAC
TTGCAAAGTTGCGCCGCGAGGCTCTCGACGGTCCAAAAACAGGTGGCAAC
TCTGCGGATCGCGGGTTTGAGGTTGTCAAACACGGCGACGCGAGGGTCGC
GGTCATAGGGTTTCCATCGACTGGTAAGAGTACTTTCCTGAGTACTGTTA
CTGAAACCAAGAGTGAAGCTGCAAGCTATGAGTTTACCACACTGACGTGC
GTGCCGGGTATCTTGGAGCACAAGGGAGCCACCATTCAGTTGTTGGATTT
GCCAGGCATCATTGAGGGGGCAGCGCAAGGAAAAGGGCGCGGCAGACAGG
TCATTGCGGTGGCTCGCTCCGCAGACCTTATTTTGCTCATGCTTGACGCC
ACAAAGTCAGATGTGCAAAGAAGTCTGTTGGAAAACGAACTGGAGTCTGT
AGGCATCCGCCTGAACAAGAGACCACCGGATGTGTACTTTAGGCCGAAGC
AAACCGGAGGAATCGCCTTCACGGCAACGGTTCCGCTGACCAAAATAACC
GAGAAAATAGCGATGAGCATTCTGAAGGAGTACAAAATACACAACGCGGA
ACTTTTAGTCCGCGAAGACATTAATGTGGATGAGCTCATCGACGTGCTTG
ACGGCAAGCGGCAGTATATCCGGTGTCTGTACCTATACAGCAAGATTGAC
GCTGTCTCGTTGGAGGAAGTTGATCGATTAGCTCGAGAACCGAATTCTGT
GGTTATGTCGTGCTATCTCAAGTTGAATCTCGACTACGTGGTGGAGCAGA
TATGGGAGTATTTGCAGCTGTGCAGAATCTACACTAAGAAGCAAGGTTCA
CCCCCAGACTTTGATGAACCTATTGTACTGCGCGGTGGCAGCAAGGTGGA
AGACGCATGTCGCGCCATCCACAGAAGTCTGGCAGACCCTTCGCAATTCC
GCTATGCACTGGTATGGGGGAAATCAACAAAGCATGATCCACAGCGCGTA
GGTCTCTCTCACAATCTTCAAGACGAAGACGTTGTTCAAATTGTCACTAA
ATGA
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protein sequence of Gvermi12203.t1

>Gvermi12203.t1 ID=Gvermi12203.t1|Name=Gvermi12203.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=polypeptide|length=368bp
MGVQERIKDIEAEMARTQKNKATEGHLGILKAKLAKLRREALDGPKTGGN
SADRGFEVVKHGDARVAVIGFPSTGKSTFLSTVTETKSEAASYEFTTLTC
VPGILEHKGATIQLLDLPGIIEGAAQGKGRGRQVIAVARSADLILLMLDA
TKSDVQRSLLENELESVGIRLNKRPPDVYFRPKQTGGIAFTATVPLTKIT
EKIAMSILKEYKIHNAELLVREDINVDELIDVLDGKRQYIRCLYLYSKID
AVSLEEVDRLAREPNSVVMSCYLKLNLDYVVEQIWEYLQLCRIYTKKQGS
PPDFDEPIVLRGGSKVEDACRAIHRSLADPSQFRYALVWGKSTKHDPQRV
GLSHNLQDEDVVQIVTK*
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mRNA from alignment at ScGOVlb_3404:3839691..3840985+

Legend: polypeptidestart_codonCDSexonintronstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Gvermi12203.t1 ID=Gvermi12203.t1|Name=Gvermi12203.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=1295bp|location=Sequence derived from alignment at ScGOVlb_3404:3839691..3840985+ (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
ATGGGTGTACAAGAAAGAATCAAAGACATTGAGGCCGAAATGGCGCGTAC
TCAGAAGAACAAGGCCACTGAGGGAGTGAGTTACGGCAGCCATCGTTAGC
TGTCGCGTCATAGAGGTGCTTTGGTTTGGCTGCATCAAGTTCGCAGCGGA
CGACTAACCACAGTGAACAAAAGCATCTAGGAATCCTTAAAGCAAAACTT
GCAAAGTTGCGCCGCGAGGCTCTCGACGGTCCAAAAACAGGTGGCAACTC
TGCGGATCGCGGGTTTGAGGTTGTCAAACACGGCGACGCGAGGGTCGCGG
TCATAGGGTTTCCATCGACTGGTAAGAGTACTTTCCTGAGTACTGTTACT
GAAACCAAGAGTGAAGCTGCAAGCTGTACGTGCACCCGGTCGTCTCCATC
CTTACGTCGGCTTCGCGCATCTCTAACAAATTCGCTTCGCTTTTGGTGAC
GCAATGTGCTCACCGCAGATGAGTTTACCACACTGACGTGCGTGCCGGGT
ATCTTGGAGCACAAGGGAGCCACCATTCAGTTGTTGGATTTGCCAGGCAT
CATTGAGGGGGCAGCGCAAGGAAAAGGGCGCGGCAGACAGGTCATTGCGG
TGGCTCGCTCCGCAGACCTTATTTTGCTCATGCTTGACGCCACAAAGTCA
GATGTGCAAAGAAGTCTGTTGGAAAACGAACTGGAGTCTGTAGGCATCCG
CCTGAACAAGAGACCACCGGATGTGTACTTTAGGCCGAAGCAAACCGGAG
GAATCGCCTTCACGGCAACGGTTCCGCTGACCAAAATAACCGAGAAAATA
GCGATGAGCATTCTGAAGGAGTACAAAATACACAACGCGGAACTTTTAGT
CCGCGAAGACATTAATGTGGATGAGCTCATCGACGTGCTTGACGGCAAGC
GGCAGTATATCCGGTGTCTGTACCTATACAGCAAGATTGACGCTGTCTCG
TTGGAGGAAGTTGATCGATTAGCTCGAGAACCGAATTCTGTGGTTATGTC
GTGCTATCTCAAGTTGAATCTCGACTACGTGGTGGAGCAGATATGGGAGT
ATTTGCAGCTGTGCAGAATCTACACTAAGAAGCAAGGTTCACCCCCAGAC
TTTGATGAACCTATTGTACTGCGCGGTGGCAGCAAGGTGGAAGACGCATG
TCGCGCCATCCACAGAAGTCTGGCAGACCCTTCGCAATTCCGCTATGCAC
TGGTATGGGGGAAATCAACAAAGCATGATCCACAGCGCGTAGGTCTCTCT
CACAATCTTCAAGACGAAGACGTTGTTCAAATTGTCACTAAATGA
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Coding sequence (CDS) from alignment at ScGOVlb_3404:3839691..3840985+

>Gvermi12203.t1 ID=Gvermi12203.t1|Name=Gvermi12203.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=CDS|length=1104bp|location=Sequence derived from alignment at ScGOVlb_3404:3839691..3840985+ (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
ATGGGTGTACAAGAAAGAATCAAAGACATTGAGGCCGAAATGGCGCGTAC
TCAGAAGAACAAGGCCACTGAGGGACATCTAGGAATCCTTAAAGCAAAAC
TTGCAAAGTTGCGCCGCGAGGCTCTCGACGGTCCAAAAACAGGTGGCAAC
TCTGCGGATCGCGGGTTTGAGGTTGTCAAACACGGCGACGCGAGGGTCGC
GGTCATAGGGTTTCCATCGACTGGTAAGAGTACTTTCCTGAGTACTGTTA
CTGAAACCAAGAGTGAAGCTGCAAGCTATGAGTTTACCACACTGACGTGC
GTGCCGGGTATCTTGGAGCACAAGGGAGCCACCATTCAGTTGTTGGATTT
GCCAGGCATCATTGAGGGGGCAGCGCAAGGAAAAGGGCGCGGCAGACAGG
TCATTGCGGTGGCTCGCTCCGCAGACCTTATTTTGCTCATGCTTGACGCC
ACAAAGTCAGATGTGCAAAGAAGTCTGTTGGAAAACGAACTGGAGTCTGT
AGGCATCCGCCTGAACAAGAGACCACCGGATGTGTACTTTAGGCCGAAGC
AAACCGGAGGAATCGCCTTCACGGCAACGGTTCCGCTGACCAAAATAACC
GAGAAAATAGCGATGAGCATTCTGAAGGAGTACAAAATACACAACGCGGA
ACTTTTAGTCCGCGAAGACATTAATGTGGATGAGCTCATCGACGTGCTTG
ACGGCAAGCGGCAGTATATCCGGTGTCTGTACCTATACAGCAAGATTGAC
GCTGTCTCGTTGGAGGAAGTTGATCGATTAGCTCGAGAACCGAATTCTGT
GGTTATGTCGTGCTATCTCAAGTTGAATCTCGACTACGTGGTGGAGCAGA
TATGGGAGTATTTGCAGCTGTGCAGAATCTACACTAAGAAGCAAGGTTCA
CCCCCAGACTTTGATGAACCTATTGTACTGCGCGGTGGCAGCAAGGTGGA
AGACGCATGTCGCGCCATCCACAGAAGTCTGGCAGACCCTTCGCAATTCC
GCTATGCACTGGTATGGGGGAAATCAACAAAGCATGATCCACAGCGCGTA
GGTCTCTCTCACAATCTTCAAGACGAAGACGTTGTTCAAATTGTCACTAA
ATGA
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