Gvermi12165.t1 (mRNA) Gracilaria vermiculophylla HapMaleFtJ_2017 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGvermi12165.t1
Unique NameGvermi12165.t1
TypemRNA
OrganismGracilaria vermiculophylla HapMaleFtJ_2017 male (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
Sequence length146
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
ScGOVlb_3404contigScGOVlb_3404:3645382..3645819 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria vermiculophylla HapMaleFtJ_2017 male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog3055.EDO99784
PFAMsHAD_2
Max annot lvl3041|Chlorophyta
Evalue1.21e-34
EggNOG OGsCOG0637@1|root,KOG2914@2759|Eukaryota,37PX8@33090|Viridiplantae,34JGN@3041|Chlorophyta
DescriptionHAD-hyrolase-like
COG categoryS
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Gvermi12165Gvermi12165Gracilaria vermiculophylla HapMaleFtJ_2017 malegeneScGOVlb_3404 3645382..3645819 -


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi12165.t1.stop1Gvermi12165.t1.stop1Gracilaria vermiculophylla HapMaleFtJ_2017 malestop_codonScGOVlb_3404 3645382..3645384 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi12165.t1.CDS1Gvermi12165.t1.CDS1Gracilaria vermiculophylla HapMaleFtJ_2017 maleCDSScGOVlb_3404 3645382..3645819 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi12165.t1.exon1Gvermi12165.t1.exon1Gracilaria vermiculophylla HapMaleFtJ_2017 maleexonScGOVlb_3404 3645382..3645819 -


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi12165.t1.start1Gvermi12165.t1.start1Gracilaria vermiculophylla HapMaleFtJ_2017 malestart_codonScGOVlb_3404 3645817..3645819 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi12165.t1Gvermi12165.t1Gracilaria vermiculophylla HapMaleFtJ_2017 malepolypeptideScGOVlb_3404 3645382..3645819 -


Sequences
The following sequences are available for this feature:

mRNA sequence

>Gvermi12165.t1 ID=Gvermi12165.t1|Name=Gvermi12165.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=146bp
MDDAHRRGLKLAVCSAASAASTRLVLRRVLGDHRVARLHVVLAGDDVPRK
KPHPMIYRVASERMAVAPSDCVVVEDSRIGLSAALHAGMRVVITHTPYTA
AQSFDGAAAVYASLGDPHSHPPADVVTIDALFPELPPAPAAPPSP*
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spliced messenger RNA

>Gvermi12165.t1 ID=Gvermi12165.t1|Name=Gvermi12165.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=438bp|location=Sequence derived from alignment at ScGOVlb_3404:3645382..3645819- (Gracilaria vermiculophylla HapMaleFtJ_2017 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGGACGACGCGCACCGCCGCGGGCTCAAGCTGGCCGTGTGCTCGGCCGC
CAGCGCCGCGTCCACGCGCCTCGTGCTGCGTCGCGTGCTGGGCGACCACC
GCGTCGCCCGCCTGCACGTCGTGCTGGCCGGCGACGACGTGCCGCGCAAG
AAGCCGCACCCCATGATCTACCGCGTCGCCAGCGAGCGCATGGCCGTCGC
CCCGAGCGACTGCGTCGTCGTCGAGGACAGCCGCATCGGCCTGAGCGCCG
CGCTGCACGCCGGCATGCGCGTCGTCATCACCCACACCCCGTACACCGCC
GCCCAGAGCTTCGACGGCGCCGCCGCCGTGTACGCGTCGCTGGGCGACCC
GCACTCGCACCCGCCCGCCGACGTCGTCACCATCGACGCGCTGTTCCCCG
AGCTGCCGCCCGCGCCCGCCGCCCCCCCCTCGCCGTAA
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protein sequence of Gvermi12165.t1

>Gvermi12165.t1 ID=Gvermi12165.t1|Name=Gvermi12165.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=polypeptide|length=146bp
MDDAHRRGLKLAVCSAASAASTRLVLRRVLGDHRVARLHVVLAGDDVPRK
KPHPMIYRVASERMAVAPSDCVVVEDSRIGLSAALHAGMRVVITHTPYTA
AQSFDGAAAVYASLGDPHSHPPADVVTIDALFPELPPAPAAPPSP*
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mRNA from alignment at ScGOVlb_3404:3645382..3645819-

Legend: polypeptideCDSexonstart_codonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Gvermi12165.t1 ID=Gvermi12165.t1|Name=Gvermi12165.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=438bp|location=Sequence derived from alignment at ScGOVlb_3404:3645382..3645819- (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
ATGGACGACGCGCACCGCCGCGGGCTCAAGCTGGCCGTGTGCTCGGCCGC
CAGCGCCGCGTCCACGCGCCTCGTGCTGCGTCGCGTGCTGGGCGACCACC
GCGTCGCCCGCCTGCACGTCGTGCTGGCCGGCGACGACGTGCCGCGCAAG
AAGCCGCACCCCATGATCTACCGCGTCGCCAGCGAGCGCATGGCCGTCGC
CCCGAGCGACTGCGTCGTCGTCGAGGACAGCCGCATCGGCCTGAGCGCCG
CGCTGCACGCCGGCATGCGCGTCGTCATCACCCACACCCCGTACACCGCC
GCCCAGAGCTTCGACGGCGCCGCCGCCGTGTACGCGTCGCTGGGCGACCC
GCACTCGCACCCGCCCGCCGACGTCGTCACCATCGACGCGCTGTTCCCCG
AGCTGCCGCCCGCGCCCGCCGCCCCCCCCTCGCCGTAA
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Coding sequence (CDS) from alignment at ScGOVlb_3404:3645382..3645819-

>Gvermi12165.t1 ID=Gvermi12165.t1|Name=Gvermi12165.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=CDS|length=438bp|location=Sequence derived from alignment at ScGOVlb_3404:3645382..3645819- (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
ATGGACGACGCGCACCGCCGCGGGCTCAAGCTGGCCGTGTGCTCGGCCGC
CAGCGCCGCGTCCACGCGCCTCGTGCTGCGTCGCGTGCTGGGCGACCACC
GCGTCGCCCGCCTGCACGTCGTGCTGGCCGGCGACGACGTGCCGCGCAAG
AAGCCGCACCCCATGATCTACCGCGTCGCCAGCGAGCGCATGGCCGTCGC
CCCGAGCGACTGCGTCGTCGTCGAGGACAGCCGCATCGGCCTGAGCGCCG
CGCTGCACGCCGGCATGCGCGTCGTCATCACCCACACCCCGTACACCGCC
GCCCAGAGCTTCGACGGCGCCGCCGCCGTGTACGCGTCGCTGGGCGACCC
GCACTCGCACCCGCCCGCCGACGTCGTCACCATCGACGCGCTGTTCCCCG
AGCTGCCGCCCGCGCCCGCCGCCCCCCCCTCGCCGTAA
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