Gvermi12444.t1 (mRNA) Gracilaria vermiculophylla HapMaleFtJ_2017 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	Gvermi12444.t1
Unique Name	Gvermi12444.t1
Type	mRNA
Organism	Gracilaria vermiculophylla HapMaleFtJ_2017 male (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
Sequence length	551

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
ScGOVlb_3404	contig	ScGOVlb_3404:4812951..4814603 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gracilaria vermiculophylla HapMaleFtJ_2017 male OGS1.0	2022-05-09

Properties


Property Name	Value
Seed ortholog	373994.Riv7116_4850
Preferred name	efeO
PFAMs	Cupredoxin_1,Peptidase_M75
Max annot lvl	2\|Bacteria
KEGG ko	ko:K07224
KEGG TC	2.A.108.2.3
Evalue	1.88e-43
EggNOG OGs	COG2822@1\|root,COG2822@2\|Bacteria
Description	iron ion transport
COG category	P
BRITE	ko00000,ko02000

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
Gvermi12444	Gvermi12444	Gracilaria vermiculophylla HapMaleFtJ_2017 male	gene	ScGOVlb_3404 4812951..4814603 +

The following start_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gvermi12444.t1.start1	Gvermi12444.t1.start1	Gracilaria vermiculophylla HapMaleFtJ_2017 male	start_codon	ScGOVlb_3404 4812951..4812953 +

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gvermi12444.t1.CDS1	Gvermi12444.t1.CDS1	Gracilaria vermiculophylla HapMaleFtJ_2017 male	CDS	ScGOVlb_3404 4812951..4814603 +

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gvermi12444.t1.exon1	Gvermi12444.t1.exon1	Gracilaria vermiculophylla HapMaleFtJ_2017 male	exon	ScGOVlb_3404 4812951..4814603 +

The following stop_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gvermi12444.t1.stop1	Gvermi12444.t1.stop1	Gracilaria vermiculophylla HapMaleFtJ_2017 male	stop_codon	ScGOVlb_3404 4814601..4814603 +

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gvermi12444.t1	Gvermi12444.t1	Gracilaria vermiculophylla HapMaleFtJ_2017 male	polypeptide	ScGOVlb_3404 4812951..4814603 +

Sequences

The following sequences are available for this feature:

mRNA sequence
mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at ScGOVlb_3404:4812951..4814603+
coding sequence from alignment at ScGOVlb_3404:4812951..4814603+

mRNA sequence

>Gvermi12444.t1 ID=Gvermi12444.t1|Name=Gvermi12444.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=551bp
MMITFFLSIVFVSSVAFAHEASISEAANAARQSFIDQCHLQQKLMRPLLI
AIRNQDLSAAKTAYVAARPPYEQIETLAPIFPELDAAIDARPYVYEKGED
DERFAGFHVLERALYRDQDLRQMYQRATALNDSINTLCTFLSNAADVYTP
GAILAGSIALAFEVPAKKVASEEETWSDLSLMIFRNNWKGIWSQVSPFLH
VANVRPETLSAVSAAYDDVQRTYRIIDPENDFSSDKGDARLYSSVPVSQK
KLIVESGYKFAVALEQLRTDLNASFGEDGGEDDENVTEAEKQFLRDALVA
GLKEFVGFCEEQQESVAKLRSVLQQRNVTWAQMAYTAARPEYERIEVLAL
DFADLDTNIDARPYALGRGEVDERWRGFHAIERALYRDDDVDSAIRYADV
LKGDVDSLCETLRKGVSGGGTFSARRAFGGMITLAYEVPAKKISSEEESW
SDLSVLIFRENLKGIWTLVQPFLEDMPEKNANRVRGAYRSARDTLEHVVD
AGNEWGSGLEFTMYSGVAVYERRRISDNFYELGRALVAARDVVFAGDHQQ
*

spliced messenger RNA

>Gvermi12444.t1 ID=Gvermi12444.t1|Name=Gvermi12444.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=1653bp|location=Sequence derived from alignment at ScGOVlb_3404:4812951..4814603+ (Gracilaria vermiculophylla HapMaleFtJ_2017 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGATGATAACCTTCTTTCTTTCGATTGTGTTTGTTTCGTCTGTTGCGTT
TGCTCATGAAGCTTCCATTTCAGAAGCTGCTAATGCCGCCCGCCAATCGT
TCATTGACCAATGCCACCTTCAACAGAAACTCATGAGGCCTCTTCTCATT
GCGATCCGCAACCAAGACTTATCAGCAGCAAAGACCGCCTATGTTGCTGC
TCGTCCACCATATGAGCAGATCGAAACCCTTGCACCAATATTCCCGGAAC
TAGATGCTGCGATTGACGCTCGTCCGTATGTTTACGAAAAGGGTGAAGAT
GACGAGAGATTTGCTGGCTTTCACGTGTTGGAGCGCGCTCTTTACCGGGA
TCAGGACTTGAGGCAAATGTATCAAAGGGCCACTGCTCTTAATGACAGCA
TCAACACGCTGTGCACGTTCCTGTCCAATGCCGCTGACGTGTACACTCCA
GGAGCCATATTGGCGGGCTCCATTGCGCTTGCATTCGAGGTACCGGCGAA
AAAGGTTGCGAGCGAGGAGGAGACATGGTCTGATCTGTCGCTAATGATTT
TCAGGAATAACTGGAAGGGTATTTGGTCGCAAGTGTCGCCGTTCCTGCAT
GTTGCGAATGTGCGACCGGAAACATTGAGCGCCGTTAGTGCCGCATACGA
CGATGTGCAGCGCACTTACCGAATAATCGATCCAGAAAACGACTTCTCCA
GCGACAAGGGTGATGCCAGACTTTACAGCTCTGTGCCAGTTTCGCAAAAG
AAGCTGATTGTAGAATCTGGGTACAAGTTTGCGGTTGCGCTCGAGCAACT
CAGGACCGACTTGAACGCGTCCTTTGGAGAAGACGGCGGAGAAGATGACG
AGAACGTGACAGAGGCGGAAAAGCAGTTTTTAAGAGATGCTCTGGTGGCC
GGGTTGAAAGAATTCGTTGGATTCTGTGAGGAGCAGCAAGAAAGTGTAGC
AAAGCTGCGTTCCGTGCTGCAGCAGCGCAACGTGACTTGGGCGCAGATGG
CGTACACAGCGGCGCGGCCCGAGTACGAGCGCATAGAAGTGCTTGCATTG
GACTTTGCGGATCTGGACACCAACATCGACGCGCGGCCGTACGCGCTCGG
GCGGGGGGAAGTGGATGAGAGATGGAGAGGATTCCACGCCATTGAACGCG
CGCTGTACCGGGATGACGACGTAGACAGTGCGATTCGGTACGCGGATGTG
TTGAAGGGGGACGTGGACAGTCTTTGTGAGACGCTGCGGAAGGGGGTGAG
CGGCGGGGGCACTTTTTCTGCGAGGCGGGCGTTTGGCGGCATGATCACGC
TTGCATACGAGGTGCCGGCCAAGAAAATAAGCTCTGAGGAAGAAAGCTGG
TCCGACCTGTCGGTGCTCATCTTTCGTGAAAACCTGAAGGGTATCTGGAC
GCTTGTGCAGCCGTTTTTGGAGGACATGCCCGAGAAGAACGCAAACAGGG
TGAGGGGGGCTTACCGCTCCGCTCGAGACACTCTGGAGCACGTTGTAGAT
GCGGGCAATGAGTGGGGAAGCGGATTGGAGTTCACGATGTACTCGGGCGT
GGCGGTCTACGAGAGGAGGCGCATTTCGGACAACTTTTACGAGTTGGGAC
GCGCCCTTGTGGCTGCACGTGATGTTGTGTTTGCGGGAGATCACCAGCAG
tga

protein sequence of Gvermi12444.t1

>Gvermi12444.t1 ID=Gvermi12444.t1|Name=Gvermi12444.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=polypeptide|length=551bp
MMITFFLSIVFVSSVAFAHEASISEAANAARQSFIDQCHLQQKLMRPLLI
AIRNQDLSAAKTAYVAARPPYEQIETLAPIFPELDAAIDARPYVYEKGED
DERFAGFHVLERALYRDQDLRQMYQRATALNDSINTLCTFLSNAADVYTP
GAILAGSIALAFEVPAKKVASEEETWSDLSLMIFRNNWKGIWSQVSPFLH
VANVRPETLSAVSAAYDDVQRTYRIIDPENDFSSDKGDARLYSSVPVSQK
KLIVESGYKFAVALEQLRTDLNASFGEDGGEDDENVTEAEKQFLRDALVA
GLKEFVGFCEEQQESVAKLRSVLQQRNVTWAQMAYTAARPEYERIEVLAL
DFADLDTNIDARPYALGRGEVDERWRGFHAIERALYRDDDVDSAIRYADV
LKGDVDSLCETLRKGVSGGGTFSARRAFGGMITLAYEVPAKKISSEEESW
SDLSVLIFRENLKGIWTLVQPFLEDMPEKNANRVRGAYRSARDTLEHVVD
AGNEWGSGLEFTMYSGVAVYERRRISDNFYELGRALVAARDVVFAGDHQQ
*

mRNA from alignment at ScGOVlb_3404:4812951..4814603+

Legend: start_codonpolypeptideCDSexonstop_codon

Hold the cursor over a type above to highlight its positions in the sequence below.

>Gvermi12444.t1 ID=Gvermi12444.t1|Name=Gvermi12444.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=1653bp|location=Sequence derived from alignment at ScGOVlb_3404:4812951..4814603+ (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
ATGATGATAACCTTCTTTCTTTCGATTGTGTTTGTTTCGTCTGTTGCGTT
TGCTCATGAAGCTTCCATTTCAGAAGCTGCTAATGCCGCCCGCCAATCGT
TCATTGACCAATGCCACCTTCAACAGAAACTCATGAGGCCTCTTCTCATT
GCGATCCGCAACCAAGACTTATCAGCAGCAAAGACCGCCTATGTTGCTGC
TCGTCCACCATATGAGCAGATCGAAACCCTTGCACCAATATTCCCGGAAC
TAGATGCTGCGATTGACGCTCGTCCGTATGTTTACGAAAAGGGTGAAGAT
GACGAGAGATTTGCTGGCTTTCACGTGTTGGAGCGCGCTCTTTACCGGGA
TCAGGACTTGAGGCAAATGTATCAAAGGGCCACTGCTCTTAATGACAGCA
TCAACACGCTGTGCACGTTCCTGTCCAATGCCGCTGACGTGTACACTCCA
GGAGCCATATTGGCGGGCTCCATTGCGCTTGCATTCGAGGTACCGGCGAA
AAAGGTTGCGAGCGAGGAGGAGACATGGTCTGATCTGTCGCTAATGATTT
TCAGGAATAACTGGAAGGGTATTTGGTCGCAAGTGTCGCCGTTCCTGCAT
GTTGCGAATGTGCGACCGGAAACATTGAGCGCCGTTAGTGCCGCATACGA
CGATGTGCAGCGCACTTACCGAATAATCGATCCAGAAAACGACTTCTCCA
GCGACAAGGGTGATGCCAGACTTTACAGCTCTGTGCCAGTTTCGCAAAAG
AAGCTGATTGTAGAATCTGGGTACAAGTTTGCGGTTGCGCTCGAGCAACT
CAGGACCGACTTGAACGCGTCCTTTGGAGAAGACGGCGGAGAAGATGACG
AGAACGTGACAGAGGCGGAAAAGCAGTTTTTAAGAGATGCTCTGGTGGCC
GGGTTGAAAGAATTCGTTGGATTCTGTGAGGAGCAGCAAGAAAGTGTAGC
AAAGCTGCGTTCCGTGCTGCAGCAGCGCAACGTGACTTGGGCGCAGATGG
CGTACACAGCGGCGCGGCCCGAGTACGAGCGCATAGAAGTGCTTGCATTG
GACTTTGCGGATCTGGACACCAACATCGACGCGCGGCCGTACGCGCTCGG
GCGGGGGGAAGTGGATGAGAGATGGAGAGGATTCCACGCCATTGAACGCG
CGCTGTACCGGGATGACGACGTAGACAGTGCGATTCGGTACGCGGATGTG
TTGAAGGGGGACGTGGACAGTCTTTGTGAGACGCTGCGGAAGGGGGTGAG
CGGCGGGGGCACTTTTTCTGCGAGGCGGGCGTTTGGCGGCATGATCACGC
TTGCATACGAGGTGCCGGCCAAGAAAATAAGCTCTGAGGAAGAAAGCTGG
TCCGACCTGTCGGTGCTCATCTTTCGTGAAAACCTGAAGGGTATCTGGAC
GCTTGTGCAGCCGTTTTTGGAGGACATGCCCGAGAAGAACGCAAACAGGG
TGAGGGGGGCTTACCGCTCCGCTCGAGACACTCTGGAGCACGTTGTAGAT
GCGGGCAATGAGTGGGGAAGCGGATTGGAGTTCACGATGTACTCGGGCGT
GGCGGTCTACGAGAGGAGGCGCATTTCGGACAACTTTTACGAGTTGGGAC
GCGCCCTTGTGGCTGCACGTGATGTTGTGTTTGCGGGAGATCACCAGCAG
tga

Coding sequence (CDS) from alignment at ScGOVlb_3404:4812951..4814603+

>Gvermi12444.t1 ID=Gvermi12444.t1|Name=Gvermi12444.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=CDS|length=1653bp|location=Sequence derived from alignment at ScGOVlb_3404:4812951..4814603+ (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
ATGATGATAACCTTCTTTCTTTCGATTGTGTTTGTTTCGTCTGTTGCGTT
TGCTCATGAAGCTTCCATTTCAGAAGCTGCTAATGCCGCCCGCCAATCGT
TCATTGACCAATGCCACCTTCAACAGAAACTCATGAGGCCTCTTCTCATT
GCGATCCGCAACCAAGACTTATCAGCAGCAAAGACCGCCTATGTTGCTGC
TCGTCCACCATATGAGCAGATCGAAACCCTTGCACCAATATTCCCGGAAC
TAGATGCTGCGATTGACGCTCGTCCGTATGTTTACGAAAAGGGTGAAGAT
GACGAGAGATTTGCTGGCTTTCACGTGTTGGAGCGCGCTCTTTACCGGGA
TCAGGACTTGAGGCAAATGTATCAAAGGGCCACTGCTCTTAATGACAGCA
TCAACACGCTGTGCACGTTCCTGTCCAATGCCGCTGACGTGTACACTCCA
GGAGCCATATTGGCGGGCTCCATTGCGCTTGCATTCGAGGTACCGGCGAA
AAAGGTTGCGAGCGAGGAGGAGACATGGTCTGATCTGTCGCTAATGATTT
TCAGGAATAACTGGAAGGGTATTTGGTCGCAAGTGTCGCCGTTCCTGCAT
GTTGCGAATGTGCGACCGGAAACATTGAGCGCCGTTAGTGCCGCATACGA
CGATGTGCAGCGCACTTACCGAATAATCGATCCAGAAAACGACTTCTCCA
GCGACAAGGGTGATGCCAGACTTTACAGCTCTGTGCCAGTTTCGCAAAAG
AAGCTGATTGTAGAATCTGGGTACAAGTTTGCGGTTGCGCTCGAGCAACT
CAGGACCGACTTGAACGCGTCCTTTGGAGAAGACGGCGGAGAAGATGACG
AGAACGTGACAGAGGCGGAAAAGCAGTTTTTAAGAGATGCTCTGGTGGCC
GGGTTGAAAGAATTCGTTGGATTCTGTGAGGAGCAGCAAGAAAGTGTAGC
AAAGCTGCGTTCCGTGCTGCAGCAGCGCAACGTGACTTGGGCGCAGATGG
CGTACACAGCGGCGCGGCCCGAGTACGAGCGCATAGAAGTGCTTGCATTG
GACTTTGCGGATCTGGACACCAACATCGACGCGCGGCCGTACGCGCTCGG
GCGGGGGGAAGTGGATGAGAGATGGAGAGGATTCCACGCCATTGAACGCG
CGCTGTACCGGGATGACGACGTAGACAGTGCGATTCGGTACGCGGATGTG
TTGAAGGGGGACGTGGACAGTCTTTGTGAGACGCTGCGGAAGGGGGTGAG
CGGCGGGGGCACTTTTTCTGCGAGGCGGGCGTTTGGCGGCATGATCACGC
TTGCATACGAGGTGCCGGCCAAGAAAATAAGCTCTGAGGAAGAAAGCTGG
TCCGACCTGTCGGTGCTCATCTTTCGTGAAAACCTGAAGGGTATCTGGAC
GCTTGTGCAGCCGTTTTTGGAGGACATGCCCGAGAAGAACGCAAACAGGG
TGAGGGGGGCTTACCGCTCCGCTCGAGACACTCTGGAGCACGTTGTAGAT
GCGGGCAATGAGTGGGGAAGCGGATTGGAGTTCACGATGTACTCGGGCGT
GGCGGTCTACGAGAGGAGGCGCATTTCGGACAACTTTTACGAGTTGGGAC
GCGCCCTTGTGGCTGCACGTGATGTTGTGTTTGCGGGAGATCACCAGCAG
tga