Gvermi12273.t1 (mRNA) Gracilaria vermiculophylla HapMaleFtJ_2017 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGvermi12273.t1
Unique NameGvermi12273.t1
TypemRNA
OrganismGracilaria vermiculophylla HapMaleFtJ_2017 male (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
Sequence length645
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
ScGOVlb_3404contigScGOVlb_3404:4074421..4076457 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria vermiculophylla HapMaleFtJ_2017 male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog3847.GLYMA06G18170.2
PFAMsDUF4110,Kelch_3,Kelch_4,Kelch_5
Max annot lvl35493|Streptophyta
Evalue1.03e-114
EggNOG OGsKOG1230@1|root,KOG1230@2759|Eukaryota,37P82@33090|Viridiplantae,3GE0M@35493|Streptophyta,4JFII@91835|fabids
DescriptionKelch domain-containing protein
COG categoryS
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Gvermi12273Gvermi12273Gracilaria vermiculophylla HapMaleFtJ_2017 malegeneScGOVlb_3404 4074421..4076457 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi12273.t1Gvermi12273.t1Gracilaria vermiculophylla HapMaleFtJ_2017 malepolypeptideScGOVlb_3404 4074421..4076457 -


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi12273.t1.stop1Gvermi12273.t1.stop1Gracilaria vermiculophylla HapMaleFtJ_2017 malestop_codonScGOVlb_3404 4074421..4074423 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi12273.t1.CDS1Gvermi12273.t1.CDS1Gracilaria vermiculophylla HapMaleFtJ_2017 maleCDSScGOVlb_3404 4074421..4076244 -
Gvermi12273.t1.CDS2Gvermi12273.t1.CDS2Gracilaria vermiculophylla HapMaleFtJ_2017 maleCDSScGOVlb_3404 4076347..4076457 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi12273.t1.exon1Gvermi12273.t1.exon1Gracilaria vermiculophylla HapMaleFtJ_2017 maleexonScGOVlb_3404 4074421..4076244 -
Gvermi12273.t1.exon2Gvermi12273.t1.exon2Gracilaria vermiculophylla HapMaleFtJ_2017 maleexonScGOVlb_3404 4076347..4076457 -


The following intron feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi12273.t1.intron1Gvermi12273.t1.intron1Gracilaria vermiculophylla HapMaleFtJ_2017 maleintronScGOVlb_3404 4076245..4076346 -


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi12273.t1.start1Gvermi12273.t1.start1Gracilaria vermiculophylla HapMaleFtJ_2017 malestart_codonScGOVlb_3404 4076455..4076457 -


Sequences
The following sequences are available for this feature:

mRNA sequence

>Gvermi12273.t1 ID=Gvermi12273.t1|Name=Gvermi12273.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=645bp
MGKKGKKKQGIGKAKTEAKAAKKTQKAAKKARETDGEDVEAILAEILAKE
AEAVKVAELQDVKPPSPRAAFTLVANPRDENELILFGGERYTGERAEFFS
DLFVFNVLKTTWNRYDSPNRPPPRSSHAAAVHKNMMYIFGGEFSNPSLTQ
YRHYRDLWRLDLEDMSWERIDLRGGPSGRSGHRMCVANNRLIVFGGFFDT
GFENKYLNDMYYIDLTLDELKWVKVETSAVDIVPSRRSGFQWVVYGTDVI
LYGGYCKEALKKAKAVSHKGKKKGGTAIEESLVAQGMVLSDMYKLSGVSM
KWSKIKRSGYGPSRRAGFSMVLHKANAVVFGGVEDDEMEENMSSEFYNDL
FALNLEKKKWYPMTLRQKKAKKGKRRKGRSKDEGTDEHVSSEAGPAPEVD
TTMTDIDDSLTLEEDDDKEFDTDTLEAALMSGRSESAPCPRFNAAVAVQK
NIMYIIGGVVEKEQQEITLDDIWAVDLNKLEEYREVKPLSPDCLEWMESD
GEDEKEEWESDNEDDNDSMPEEMDVEDEEEVDEKQRRRGGRRERLRARVQ
SGENEHFTPLVNESLKDFFERTKSYWIGEVHEALGESGKALRRVAFEWAF
RRYWEIKPTLKELEEIEAQIAREEVLEQEFQKAQIEQKRIRGRR*
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spliced messenger RNA

>Gvermi12273.t1 ID=Gvermi12273.t1|Name=Gvermi12273.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=1935bp|location=Sequence derived from alignment at ScGOVlb_3404:4074421..4076457- (Gracilaria vermiculophylla HapMaleFtJ_2017 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGGGAAAAAAGGGAAAGAAGAAGCAGGGTATTGGGAAAGCAAAGACGGA
AGCAAAGGCAGCAAAAAAAACTCAGAAGGCTGCGAAAAAAGCTCGTGAAA
CAGACGGAGAAGATGTTGAAGCAATTTTGGCAGAGATTCTAGCCAAAGAA
GCTGAAGCCGTGAAAGTAGCTGAGCTTCAAGATGTTAAACCACCGTCACC
ACGTGCTGCCTTTACACTTGTAGCAAATCCTCGAGACGAGAATGAACTAA
TTCTCTTTGGAGGTGAGCGATACACAGGGGAAAGAGCTGAATTCTTCAGT
GACCTATTCGTCTTCAATGTTTTGAAGACTACATGGAACAGGTACGATTC
GCCAAATAGGCCGCCACCGCGGAGTTCGCATGCAGCGGCAGTTCATAAGA
ACATGATGTATATTTTCGGAGGTGAATTCAGTAATCCAAGTTTGACCCAA
TACCGTCATTATCGTGATCTCTGGCGACTTGACCTCGAAGATATGAGTTG
GGAGCGCATTGATCTTCGTGGTGGACCTTCTGGACGTTCTGGCCATCGCA
TGTGCGTGGCTAACAACAGGTTGATCGTGTTTGGTGGCTTTTTTGACACG
GGCTTCGAGAACAAATACCTAAACGACATGTATTACATAGATTTGACTTT
GGATGAGCTGAAATGGGTGAAAGTCGAAACAAGTGCCGTTGACATTGTTC
CATCGAGAAGATCTGGGTTTCAATGGGTTGTTTACGGTACTGACGTGATA
CTGTACGGTGGATATTGCAAGGAAGCTCTAAAGAAGGCTAAGGCTGTTTC
CCACAAAGGAAAGAAGAAAGGGGGTACAGCTATTGAAGAATCTCTAGTCG
CACAGGGAATGGTACTTTCCGACATGTATAAATTGTCTGGGGTAAGCATG
AAATGGTCAAAGATTAAGCGAAGTGGGTATGGTCCTTCACGACGTGCTGG
TTTCTCTATGGTTCTTCATAAGGCGAATGCTGTGGTTTTTGGAGGCGTTG
AAGATGATGAAATGGAGGAGAATATGTCATCCGAATTTTACAACGATCTG
TTTGCTCTGAATCTGGAAAAGAAGAAATGGTACCCCATGACTTTGAGACA
AAAGAAAGCCAAAAAGGGGAAACGTCGTAAAGGACGTAGTAAGGATGAAG
GCACGGATGAACATGTCTCTTCTGAGGCAGGTCCGGCTCCAGAGGTTGAC
ACGACAATGACGGACATTGATGATTCTCTGACTTTGGAAGAAGATGATGA
TAAAGAATTTGACACTGACACACTTGAAGCCGCCCTTATGTCTGGGCGAA
GTGAGTCGGCACCATGTCCGAGATTCAATGCAGCTGTTGCTGTGCAGAAA
AATATCATGTACATCATAGGTGGTGTTGTTGAAAAAGAGCAACAGGAGAT
TACACTAGACGATATTTGGGCTGTGGATCTCAATAAACTCGAGGAATACA
GAGAAGTGAAGCCCTTGAGCCCGGATTGTTTGGAGTGGATGGAATCGGAT
GGTGAAGACGAGAAAGAAGAGTGGGAAAGTGACAATGAGGATGACAACGA
TTCAATGCCTGAAGAAATGGATGTGGAAGACGAAGAAGAGGTAGATGAAA
AGCAACGTCGAAGAGGTGGCAGACGTGAAAGGCTTCGCGCCCGTGTGCAA
AGTGGGGAGAATGAACATTTTACCCCGCTAGTCAATGAGTCCTTAAAAGA
CTTTTTCGAACGTACGAAATCGTACTGGATCGGGGAAGTTCATGAGGCAC
TCGGAGAAAGTGGCAAAGCCCTGCGAAGAGTTGCCTTTGAATGGGCGTTT
CGAAGATATTGGGAGATAAAGCCCACTCTAAAAGAGCTTGAGGAAATAGA
AGCACAAATAGCCCGAGAGGAAGTTCTGGAGCAAGAATTTCAGAAAGCTC
AAATAGAACAAAAACGTATCCGAGGAAGGCGTTGA
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protein sequence of Gvermi12273.t1

>Gvermi12273.t1 ID=Gvermi12273.t1|Name=Gvermi12273.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=polypeptide|length=645bp
MGKKGKKKQGIGKAKTEAKAAKKTQKAAKKARETDGEDVEAILAEILAKE
AEAVKVAELQDVKPPSPRAAFTLVANPRDENELILFGGERYTGERAEFFS
DLFVFNVLKTTWNRYDSPNRPPPRSSHAAAVHKNMMYIFGGEFSNPSLTQ
YRHYRDLWRLDLEDMSWERIDLRGGPSGRSGHRMCVANNRLIVFGGFFDT
GFENKYLNDMYYIDLTLDELKWVKVETSAVDIVPSRRSGFQWVVYGTDVI
LYGGYCKEALKKAKAVSHKGKKKGGTAIEESLVAQGMVLSDMYKLSGVSM
KWSKIKRSGYGPSRRAGFSMVLHKANAVVFGGVEDDEMEENMSSEFYNDL
FALNLEKKKWYPMTLRQKKAKKGKRRKGRSKDEGTDEHVSSEAGPAPEVD
TTMTDIDDSLTLEEDDDKEFDTDTLEAALMSGRSESAPCPRFNAAVAVQK
NIMYIIGGVVEKEQQEITLDDIWAVDLNKLEEYREVKPLSPDCLEWMESD
GEDEKEEWESDNEDDNDSMPEEMDVEDEEEVDEKQRRRGGRRERLRARVQ
SGENEHFTPLVNESLKDFFERTKSYWIGEVHEALGESGKALRRVAFEWAF
RRYWEIKPTLKELEEIEAQIAREEVLEQEFQKAQIEQKRIRGRR*
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mRNA from alignment at ScGOVlb_3404:4074421..4076457-

Legend: polypeptideCDSexonstart_codonintronstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Gvermi12273.t1 ID=Gvermi12273.t1|Name=Gvermi12273.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=2037bp|location=Sequence derived from alignment at ScGOVlb_3404:4074421..4076457- (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
ATGGGAAAAAAGGGAAAGAAGAAGCAGGGTATTGGGAAAGCAAAGACGGA
AGCAAAGGCAGCAAAAAAAACTCAGAAGGCTGCGAAAAAAGCTCGTGAAA
CAGACGGAGAAGTATGTATGGAAAGCCATCTCATTAATTCCTGATATTTG
TGCTCCAAAGGGCAAGTAATACATGTTCATCGTTTCTAACCACTTTTTTA
CGATTATGTGCAGGATGTTGAAGCAATTTTGGCAGAGATTCTAGCCAAAG
AAGCTGAAGCCGTGAAAGTAGCTGAGCTTCAAGATGTTAAACCACCGTCA
CCACGTGCTGCCTTTACACTTGTAGCAAATCCTCGAGACGAGAATGAACT
AATTCTCTTTGGAGGTGAGCGATACACAGGGGAAAGAGCTGAATTCTTCA
GTGACCTATTCGTCTTCAATGTTTTGAAGACTACATGGAACAGGTACGAT
TCGCCAAATAGGCCGCCACCGCGGAGTTCGCATGCAGCGGCAGTTCATAA
GAACATGATGTATATTTTCGGAGGTGAATTCAGTAATCCAAGTTTGACCC
AATACCGTCATTATCGTGATCTCTGGCGACTTGACCTCGAAGATATGAGT
TGGGAGCGCATTGATCTTCGTGGTGGACCTTCTGGACGTTCTGGCCATCG
CATGTGCGTGGCTAACAACAGGTTGATCGTGTTTGGTGGCTTTTTTGACA
CGGGCTTCGAGAACAAATACCTAAACGACATGTATTACATAGATTTGACT
TTGGATGAGCTGAAATGGGTGAAAGTCGAAACAAGTGCCGTTGACATTGT
TCCATCGAGAAGATCTGGGTTTCAATGGGTTGTTTACGGTACTGACGTGA
TACTGTACGGTGGATATTGCAAGGAAGCTCTAAAGAAGGCTAAGGCTGTT
TCCCACAAAGGAAAGAAGAAAGGGGGTACAGCTATTGAAGAATCTCTAGT
CGCACAGGGAATGGTACTTTCCGACATGTATAAATTGTCTGGGGTAAGCA
TGAAATGGTCAAAGATTAAGCGAAGTGGGTATGGTCCTTCACGACGTGCT
GGTTTCTCTATGGTTCTTCATAAGGCGAATGCTGTGGTTTTTGGAGGCGT
TGAAGATGATGAAATGGAGGAGAATATGTCATCCGAATTTTACAACGATC
TGTTTGCTCTGAATCTGGAAAAGAAGAAATGGTACCCCATGACTTTGAGA
CAAAAGAAAGCCAAAAAGGGGAAACGTCGTAAAGGACGTAGTAAGGATGA
AGGCACGGATGAACATGTCTCTTCTGAGGCAGGTCCGGCTCCAGAGGTTG
ACACGACAATGACGGACATTGATGATTCTCTGACTTTGGAAGAAGATGAT
GATAAAGAATTTGACACTGACACACTTGAAGCCGCCCTTATGTCTGGGCG
AAGTGAGTCGGCACCATGTCCGAGATTCAATGCAGCTGTTGCTGTGCAGA
AAAATATCATGTACATCATAGGTGGTGTTGTTGAAAAAGAGCAACAGGAG
ATTACACTAGACGATATTTGGGCTGTGGATCTCAATAAACTCGAGGAATA
CAGAGAAGTGAAGCCCTTGAGCCCGGATTGTTTGGAGTGGATGGAATCGG
ATGGTGAAGACGAGAAAGAAGAGTGGGAAAGTGACAATGAGGATGACAAC
GATTCAATGCCTGAAGAAATGGATGTGGAAGACGAAGAAGAGGTAGATGA
AAAGCAACGTCGAAGAGGTGGCAGACGTGAAAGGCTTCGCGCCCGTGTGC
AAAGTGGGGAGAATGAACATTTTACCCCGCTAGTCAATGAGTCCTTAAAA
GACTTTTTCGAACGTACGAAATCGTACTGGATCGGGGAAGTTCATGAGGC
ACTCGGAGAAAGTGGCAAAGCCCTGCGAAGAGTTGCCTTTGAATGGGCGT
TTCGAAGATATTGGGAGATAAAGCCCACTCTAAAAGAGCTTGAGGAAATA
GAAGCACAAATAGCCCGAGAGGAAGTTCTGGAGCAAGAATTTCAGAAAGC
TCAAATAGAACAAAAACGTATCCGAGGAAGGCGTTGA
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Coding sequence (CDS) from alignment at ScGOVlb_3404:4074421..4076457-

>Gvermi12273.t1 ID=Gvermi12273.t1|Name=Gvermi12273.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=CDS|length=1935bp|location=Sequence derived from alignment at ScGOVlb_3404:4074421..4076457- (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
ATGGGAAAAAAGGGAAAGAAGAAGCAGGGTATTGGGAAAGCAAAGACGGA
AGCAAAGGCAGCAAAAAAAACTCAGAAGGCTGCGAAAAAAGCTCGTGAAA
CAGACGGAGAAGATGTTGAAGCAATTTTGGCAGAGATTCTAGCCAAAGAA
GCTGAAGCCGTGAAAGTAGCTGAGCTTCAAGATGTTAAACCACCGTCACC
ACGTGCTGCCTTTACACTTGTAGCAAATCCTCGAGACGAGAATGAACTAA
TTCTCTTTGGAGGTGAGCGATACACAGGGGAAAGAGCTGAATTCTTCAGT
GACCTATTCGTCTTCAATGTTTTGAAGACTACATGGAACAGGTACGATTC
GCCAAATAGGCCGCCACCGCGGAGTTCGCATGCAGCGGCAGTTCATAAGA
ACATGATGTATATTTTCGGAGGTGAATTCAGTAATCCAAGTTTGACCCAA
TACCGTCATTATCGTGATCTCTGGCGACTTGACCTCGAAGATATGAGTTG
GGAGCGCATTGATCTTCGTGGTGGACCTTCTGGACGTTCTGGCCATCGCA
TGTGCGTGGCTAACAACAGGTTGATCGTGTTTGGTGGCTTTTTTGACACG
GGCTTCGAGAACAAATACCTAAACGACATGTATTACATAGATTTGACTTT
GGATGAGCTGAAATGGGTGAAAGTCGAAACAAGTGCCGTTGACATTGTTC
CATCGAGAAGATCTGGGTTTCAATGGGTTGTTTACGGTACTGACGTGATA
CTGTACGGTGGATATTGCAAGGAAGCTCTAAAGAAGGCTAAGGCTGTTTC
CCACAAAGGAAAGAAGAAAGGGGGTACAGCTATTGAAGAATCTCTAGTCG
CACAGGGAATGGTACTTTCCGACATGTATAAATTGTCTGGGGTAAGCATG
AAATGGTCAAAGATTAAGCGAAGTGGGTATGGTCCTTCACGACGTGCTGG
TTTCTCTATGGTTCTTCATAAGGCGAATGCTGTGGTTTTTGGAGGCGTTG
AAGATGATGAAATGGAGGAGAATATGTCATCCGAATTTTACAACGATCTG
TTTGCTCTGAATCTGGAAAAGAAGAAATGGTACCCCATGACTTTGAGACA
AAAGAAAGCCAAAAAGGGGAAACGTCGTAAAGGACGTAGTAAGGATGAAG
GCACGGATGAACATGTCTCTTCTGAGGCAGGTCCGGCTCCAGAGGTTGAC
ACGACAATGACGGACATTGATGATTCTCTGACTTTGGAAGAAGATGATGA
TAAAGAATTTGACACTGACACACTTGAAGCCGCCCTTATGTCTGGGCGAA
GTGAGTCGGCACCATGTCCGAGATTCAATGCAGCTGTTGCTGTGCAGAAA
AATATCATGTACATCATAGGTGGTGTTGTTGAAAAAGAGCAACAGGAGAT
TACACTAGACGATATTTGGGCTGTGGATCTCAATAAACTCGAGGAATACA
GAGAAGTGAAGCCCTTGAGCCCGGATTGTTTGGAGTGGATGGAATCGGAT
GGTGAAGACGAGAAAGAAGAGTGGGAAAGTGACAATGAGGATGACAACGA
TTCAATGCCTGAAGAAATGGATGTGGAAGACGAAGAAGAGGTAGATGAAA
AGCAACGTCGAAGAGGTGGCAGACGTGAAAGGCTTCGCGCCCGTGTGCAA
AGTGGGGAGAATGAACATTTTACCCCGCTAGTCAATGAGTCCTTAAAAGA
CTTTTTCGAACGTACGAAATCGTACTGGATCGGGGAAGTTCATGAGGCAC
TCGGAGAAAGTGGCAAAGCCCTGCGAAGAGTTGCCTTTGAATGGGCGTTT
CGAAGATATTGGGAGATAAAGCCCACTCTAAAAGAGCTTGAGGAAATAGA
AGCACAAATAGCCCGAGAGGAAGTTCTGGAGCAAGAATTTCAGAAAGCTC
AAATAGAACAAAAACGTATCCGAGGAAGGCGTTGA
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