Gvermi12307.t1 (polypeptide) Gracilaria vermiculophylla HapMaleFtJ_2017 male

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NameGvermi12307.t1
Unique NameGvermi12307.t1
Typepolypeptide
OrganismGracilaria vermiculophylla HapMaleFtJ_2017 male (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
Sequence length194
Homology
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BLAST of Gvermi12307.t1 vs. uniprot
Match: A0A2V3IMQ8_9FLOR (Uncharacterized protein n=1 Tax=Gracilariopsis chorda TaxID=448386 RepID=A0A2V3IMQ8_9FLOR)

HSP 1 Score: 114 bits (284), Expect = 1.480e-28
Identity = 76/176 (43.18%), Postives = 111/176 (63.07%), Query Frame = 0 
Query:   22 MSSSLSLLAKKNDR--LWNDVEHHGKAAEAYPDLQTRSKMSLSLNGSNNQRSKKESPDF--LVSSEKIGMYDDGLDEVSQRMEAKRFKKSNGDDMIPGAILAISAAMACVLSAVGALIMIRGPQSESRKRMLEEIGEYHRTLSDDELAIGLDERTSSSTTSLIKDEDGDIIPEESV 193
            MSSS SLLAKKNDR     +V +H K AE    + T +++S S+N SN+ +  +++ D   +V++E +   +  L+   QR++  +F  S  +++IPGAILA+ AAMAC LSAVGAL +IRGP++E R R LEE+ EYHR  S++E             TSL +DE  +I PE++V
Sbjct:    1 MSSSFSLLAKKNDRKLALRNVLNHVKTAEPSHVVATATRLSSSVNESNSIQQAEDARDIREIVTAEGVRA-NFSLENSVQRLKGSQFHSSKTENIIPGAILALGAAMACALSAVGALAVIRGPRTEDRTRYLEEMREYHRLSSEEEDTFEDPAADYPLQTSLTRDEIDEIKPEDAV 175
The following BLAST results are available for this feature:
BLAST of Gvermi12307.t1 vs. uniprot
Analysis Date: 2022-06-02 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A2V3IMQ8_9FLOR1.480e-2843.18Uncharacterized protein n=1 Tax=Gracilariopsis cho... [more]
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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-06-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 166..193
NoneNo IPR availablePHOBIUSCYTOPLASMIC_DOMAINCytoplasmic domaincoord: 138..193
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDE_H_REGIONSignal peptide H-regioncoord: 9..21
NoneNo IPR availablePHOBIUSNON_CYTOPLASMIC_DOMAINNon cytoplasmic domaincoord: 30..111
NoneNo IPR availablePHOBIUSTRANSMEMBRANETransmembrane regioncoord: 112..137
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDE_N_REGIONSignal peptide N-regioncoord: 1..8
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDESignal Peptidecoord: 1..29
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDE_C_REGIONSignal peptide C-regioncoord: 22..29
NoneNo IPR availableTMHMMTMhelixcoord: 9..30
NoneNo IPR availableTMHMMTMhelixcoord: 115..137

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
ScGOVlb_3404contigScGOVlb_3404:4150600..4151181 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-06-01
Diamond blastp: OGS1.0 vs UniRef902022-06-02
Gracilaria vermiculophylla HapMaleFtJ_2017 male OGS1.02022-05-09
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
Gvermi12307.t1Gvermi12307.t1Gracilaria vermiculophylla HapMaleFtJ_2017 malemRNAScGOVlb_3404 4150600..4151181 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>Gvermi12307.t1 ID=Gvermi12307.t1|Name=Gvermi12307.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=polypeptide|length=194bp
MHQSGRERLLVFLVSVSLCSIMSSSLSLLAKKNDRLWNDVEHHGKAAEAY
PDLQTRSKMSLSLNGSNNQRSKKESPDFLVSSEKIGMYDDGLDEVSQRME
AKRFKKSNGDDMIPGAILAISAAMACVLSAVGALIMIRGPQSESRKRMLE
EIGEYHRTLSDDELAIGLDERTSSSTTSLIKDEDGDIIPEESV*
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