Gvermi12292.t2 (mRNA) Gracilaria vermiculophylla HapMaleFtJ_2017 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGvermi12292.t2
Unique NameGvermi12292.t2
TypemRNA
OrganismGracilaria vermiculophylla HapMaleFtJ_2017 male (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
Sequence length610
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
ScGOVlb_3404contigScGOVlb_3404:4110821..4112650 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria vermiculophylla HapMaleFtJ_2017 male OGS1.02022-05-09
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Gvermi12292Gvermi12292Gracilaria vermiculophylla HapMaleFtJ_2017 malegeneScGOVlb_3404 4110821..4113751 -


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi12292.t2.stop1Gvermi12292.t2.stop1Gracilaria vermiculophylla HapMaleFtJ_2017 malestop_codonScGOVlb_3404 4110821..4110823 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi12292.t2.CDS1Gvermi12292.t2.CDS1Gracilaria vermiculophylla HapMaleFtJ_2017 maleCDSScGOVlb_3404 4110821..4112650 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi12292.t2.exon1Gvermi12292.t2.exon1Gracilaria vermiculophylla HapMaleFtJ_2017 maleexonScGOVlb_3404 4110821..4112650 -


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi12292.t2.start1Gvermi12292.t2.start1Gracilaria vermiculophylla HapMaleFtJ_2017 malestart_codonScGOVlb_3404 4112648..4112650 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi12292.t2Gvermi12292.t2Gracilaria vermiculophylla HapMaleFtJ_2017 malepolypeptideScGOVlb_3404 4110821..4112650 -


Sequences
The following sequences are available for this feature:

mRNA sequence

>Gvermi12292.t2 ID=Gvermi12292.t2|Name=Gvermi12292.t2|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=610bp
MKIFSETEGRIKNDAIETKLEVGESQNNMKKEAHSKSCKTLFPSLESCRA
SLTTLSEDDGEVQRDELMEKKKHLVVSADVFREMVKYKLDIRNTCRDLGQ
VVAKSVFSALEDSQADFFNREIRRYLELEKKWIDDQLAVAFISISQMESI
MPNLVPTKQSDPKMFHQYVSFYDEATANFKDITLTVIEFTYESICRLSDV
VLSRSQGTQEEIYENCLRPEKFSGKDFLMQCSKPDVDLTSTVLDSSESWP
ELQAEQPKRVSDEENDDGSFGEIPMRGKLVVDVRNVIHEMLRGMMVMYLA
NAETVLQAAAPLLPVCKEDAVNEQLWTMSSSPLTAYTMAVENLVQANELM
ADFLLNLKSSETHVLDSSEFIEPQVATCHLVSQETRDVLHAELVGSLNEL
GAEAQQGVKAAISAMHLRVSAILFAPEATQPYTSTNDHVQAVYDGFEGRQ
EPLDVVKPKPSKAFIEVCEFLDHQIHFIVKNIKSCNRDFILAEVASLTRD
SIMKCWCCSPGHISLSGAMQMIADSRMVFKPFQKHGIPVQTLRCLPSLAQ
LFLESPDGLWACIEGSALVDVDARILVGLLKKRIDFGSREIVKICQSLGA
SEEELLTGL*
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spliced messenger RNA

>Gvermi12292.t2 ID=Gvermi12292.t2|Name=Gvermi12292.t2|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=1830bp|location=Sequence derived from alignment at ScGOVlb_3404:4110821..4112650- (Gracilaria vermiculophylla HapMaleFtJ_2017 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGAAGATCTTCAGCGAGACCGAAGGAAGAATAAAAAATGACGCGATTGA
AACTAAGTTGGAAGTCGGAGAGTCACAGAACAACATGAAGAAAGAAGCAC
ATTCGAAGAGCTGCAAAACTCTTTTTCCAAGCCTGGAATCATGCCGTGCA
TCCCTCACTACTTTATCAGAAGACGACGGCGAAGTGCAGCGCGATGAACT
CATGGAAAAAAAGAAACATCTTGTTGTTTCAGCGGATGTGTTCAGAGAGA
TGGTCAAATACAAATTAGATATTCGCAACACTTGTCGTGATCTAGGACAA
GTAGTTGCAAAGTCGGTTTTTTCTGCTTTGGAAGATTCCCAGGCGGATTT
CTTTAATAGGGAAATCCGACGCTATTTAGAATTGGAGAAGAAATGGATTG
ACGATCAGTTAGCAGTTGCGTTCATCAGTATATCGCAAATGGAATCAATC
ATGCCGAATTTGGTGCCAACCAAGCAAAGCGATCCGAAGATGTTCCACCA
ATATGTTAGCTTTTATGATGAAGCAACTGCGAATTTTAAGGATATAACTT
TGACTGTTATTGAATTTACTTATGAATCTATTTGTCGTCTATCTGATGTT
GTATTGTCTCGTTCACAAGGCACACAAGAAGAAATATATGAAAACTGCTT
AAGACCGGAAAAGTTTTCTGGAAAAGACTTTTTGATGCAGTGTTCAAAAC
CCGACGTTGATCTAACTTCCACAGTTTTGGATTCTTCGGAATCATGGCCC
GAACTTCAAGCAGAGCAACCGAAAAGAGTATCGGATGAGGAGAACGACGA
TGGCTCATTTGGCGAAATCCCAATGCGAGGAAAATTAGTGGTAGACGTCA
GAAATGTCATCCACGAGATGCTGAGAGGCATGATGGTTATGTATTTGGCG
AACGCTGAGACTGTTTTACAAGCAGCGGCTCCTTTGCTCCCGGTTTGCAA
AGAAGATGCCGTCAATGAACAGTTATGGACGATGAGCTCCTCTCCTCTAA
CAGCGTATACGATGGCGGTTGAAAATCTTGTTCAAGCGAATGAACTCATG
GCTGACTTTTTACTTAACTTGAAAAGTTCCGAAACGCATGTATTGGATTC
TAGCGAATTTATCGAGCCGCAAGTAGCTACATGTCATTTAGTTTCACAAG
AAACTCGAGATGTGCTCCATGCTGAACTGGTCGGGAGTTTAAATGAGCTT
GGAGCAGAGGCTCAACAAGGCGTAAAGGCAGCAATTAGTGCTATGCATCT
CCGCGTGTCCGCGATTCTTTTTGCGCCAGAAGCTACCCAGCCGTACACAA
GCACCAACGACCACGTTCAGGCCGTATATGACGGCTTCGAAGGAAGGCAA
GAACCTTTGGACGTTGTGAAACCCAAACCTTCGAAAGCCTTTATCGAGGT
GTGCGAGTTCTTGGATCATCAAATACATTTCATCGTGAAGAATATCAAGA
GTTGCAATCGTGACTTCATTTTAGCCGAAGTGGCATCTTTAACCCGAGAT
TCCATCATGAAGTGTTGGTGCTGTAGTCCTGGTCACATATCCTTATCGGG
GGCAATGCAGATGATCGCAGACAGTCGAATGGTCTTTAAACCGTTTCAAA
AACATGGAATACCAGTTCAAACGCTTCGCTGCTTGCCATCATTAGCCCAA
CTATTTTTGGAATCTCCTGATGGGCTGTGGGCGTGTATCGAAGGATCAGC
ATTGGTTGATGTTGATGCCAGGATACTCGTAGGTCTGCTTAAGAAGAGAA
TTGACTTTGGATCCCGAGAGATCGTCAAAATATGTCAATCTCTAGGTGCA
AGTGAGGAAGAGCTCCTAACGGGACTATAG
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protein sequence of Gvermi12292.t2

>Gvermi12292.t2 ID=Gvermi12292.t2|Name=Gvermi12292.t2|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=polypeptide|length=610bp
MKIFSETEGRIKNDAIETKLEVGESQNNMKKEAHSKSCKTLFPSLESCRA
SLTTLSEDDGEVQRDELMEKKKHLVVSADVFREMVKYKLDIRNTCRDLGQ
VVAKSVFSALEDSQADFFNREIRRYLELEKKWIDDQLAVAFISISQMESI
MPNLVPTKQSDPKMFHQYVSFYDEATANFKDITLTVIEFTYESICRLSDV
VLSRSQGTQEEIYENCLRPEKFSGKDFLMQCSKPDVDLTSTVLDSSESWP
ELQAEQPKRVSDEENDDGSFGEIPMRGKLVVDVRNVIHEMLRGMMVMYLA
NAETVLQAAAPLLPVCKEDAVNEQLWTMSSSPLTAYTMAVENLVQANELM
ADFLLNLKSSETHVLDSSEFIEPQVATCHLVSQETRDVLHAELVGSLNEL
GAEAQQGVKAAISAMHLRVSAILFAPEATQPYTSTNDHVQAVYDGFEGRQ
EPLDVVKPKPSKAFIEVCEFLDHQIHFIVKNIKSCNRDFILAEVASLTRD
SIMKCWCCSPGHISLSGAMQMIADSRMVFKPFQKHGIPVQTLRCLPSLAQ
LFLESPDGLWACIEGSALVDVDARILVGLLKKRIDFGSREIVKICQSLGA
SEEELLTGL*
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mRNA from alignment at ScGOVlb_3404:4110821..4112650-

Legend: polypeptideCDSexonstart_codonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Gvermi12292.t2 ID=Gvermi12292.t2|Name=Gvermi12292.t2|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=1830bp|location=Sequence derived from alignment at ScGOVlb_3404:4110821..4112650- (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
ATGAAGATCTTCAGCGAGACCGAAGGAAGAATAAAAAATGACGCGATTGA
AACTAAGTTGGAAGTCGGAGAGTCACAGAACAACATGAAGAAAGAAGCAC
ATTCGAAGAGCTGCAAAACTCTTTTTCCAAGCCTGGAATCATGCCGTGCA
TCCCTCACTACTTTATCAGAAGACGACGGCGAAGTGCAGCGCGATGAACT
CATGGAAAAAAAGAAACATCTTGTTGTTTCAGCGGATGTGTTCAGAGAGA
TGGTCAAATACAAATTAGATATTCGCAACACTTGTCGTGATCTAGGACAA
GTAGTTGCAAAGTCGGTTTTTTCTGCTTTGGAAGATTCCCAGGCGGATTT
CTTTAATAGGGAAATCCGACGCTATTTAGAATTGGAGAAGAAATGGATTG
ACGATCAGTTAGCAGTTGCGTTCATCAGTATATCGCAAATGGAATCAATC
ATGCCGAATTTGGTGCCAACCAAGCAAAGCGATCCGAAGATGTTCCACCA
ATATGTTAGCTTTTATGATGAAGCAACTGCGAATTTTAAGGATATAACTT
TGACTGTTATTGAATTTACTTATGAATCTATTTGTCGTCTATCTGATGTT
GTATTGTCTCGTTCACAAGGCACACAAGAAGAAATATATGAAAACTGCTT
AAGACCGGAAAAGTTTTCTGGAAAAGACTTTTTGATGCAGTGTTCAAAAC
CCGACGTTGATCTAACTTCCACAGTTTTGGATTCTTCGGAATCATGGCCC
GAACTTCAAGCAGAGCAACCGAAAAGAGTATCGGATGAGGAGAACGACGA
TGGCTCATTTGGCGAAATCCCAATGCGAGGAAAATTAGTGGTAGACGTCA
GAAATGTCATCCACGAGATGCTGAGAGGCATGATGGTTATGTATTTGGCG
AACGCTGAGACTGTTTTACAAGCAGCGGCTCCTTTGCTCCCGGTTTGCAA
AGAAGATGCCGTCAATGAACAGTTATGGACGATGAGCTCCTCTCCTCTAA
CAGCGTATACGATGGCGGTTGAAAATCTTGTTCAAGCGAATGAACTCATG
GCTGACTTTTTACTTAACTTGAAAAGTTCCGAAACGCATGTATTGGATTC
TAGCGAATTTATCGAGCCGCAAGTAGCTACATGTCATTTAGTTTCACAAG
AAACTCGAGATGTGCTCCATGCTGAACTGGTCGGGAGTTTAAATGAGCTT
GGAGCAGAGGCTCAACAAGGCGTAAAGGCAGCAATTAGTGCTATGCATCT
CCGCGTGTCCGCGATTCTTTTTGCGCCAGAAGCTACCCAGCCGTACACAA
GCACCAACGACCACGTTCAGGCCGTATATGACGGCTTCGAAGGAAGGCAA
GAACCTTTGGACGTTGTGAAACCCAAACCTTCGAAAGCCTTTATCGAGGT
GTGCGAGTTCTTGGATCATCAAATACATTTCATCGTGAAGAATATCAAGA
GTTGCAATCGTGACTTCATTTTAGCCGAAGTGGCATCTTTAACCCGAGAT
TCCATCATGAAGTGTTGGTGCTGTAGTCCTGGTCACATATCCTTATCGGG
GGCAATGCAGATGATCGCAGACAGTCGAATGGTCTTTAAACCGTTTCAAA
AACATGGAATACCAGTTCAAACGCTTCGCTGCTTGCCATCATTAGCCCAA
CTATTTTTGGAATCTCCTGATGGGCTGTGGGCGTGTATCGAAGGATCAGC
ATTGGTTGATGTTGATGCCAGGATACTCGTAGGTCTGCTTAAGAAGAGAA
TTGACTTTGGATCCCGAGAGATCGTCAAAATATGTCAATCTCTAGGTGCA
AGTGAGGAAGAGCTCCTAACGGGACTATAG
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Coding sequence (CDS) from alignment at ScGOVlb_3404:4110821..4112650-

>Gvermi12292.t2 ID=Gvermi12292.t2|Name=Gvermi12292.t2|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=CDS|length=1830bp|location=Sequence derived from alignment at ScGOVlb_3404:4110821..4112650- (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
ATGAAGATCTTCAGCGAGACCGAAGGAAGAATAAAAAATGACGCGATTGA
AACTAAGTTGGAAGTCGGAGAGTCACAGAACAACATGAAGAAAGAAGCAC
ATTCGAAGAGCTGCAAAACTCTTTTTCCAAGCCTGGAATCATGCCGTGCA
TCCCTCACTACTTTATCAGAAGACGACGGCGAAGTGCAGCGCGATGAACT
CATGGAAAAAAAGAAACATCTTGTTGTTTCAGCGGATGTGTTCAGAGAGA
TGGTCAAATACAAATTAGATATTCGCAACACTTGTCGTGATCTAGGACAA
GTAGTTGCAAAGTCGGTTTTTTCTGCTTTGGAAGATTCCCAGGCGGATTT
CTTTAATAGGGAAATCCGACGCTATTTAGAATTGGAGAAGAAATGGATTG
ACGATCAGTTAGCAGTTGCGTTCATCAGTATATCGCAAATGGAATCAATC
ATGCCGAATTTGGTGCCAACCAAGCAAAGCGATCCGAAGATGTTCCACCA
ATATGTTAGCTTTTATGATGAAGCAACTGCGAATTTTAAGGATATAACTT
TGACTGTTATTGAATTTACTTATGAATCTATTTGTCGTCTATCTGATGTT
GTATTGTCTCGTTCACAAGGCACACAAGAAGAAATATATGAAAACTGCTT
AAGACCGGAAAAGTTTTCTGGAAAAGACTTTTTGATGCAGTGTTCAAAAC
CCGACGTTGATCTAACTTCCACAGTTTTGGATTCTTCGGAATCATGGCCC
GAACTTCAAGCAGAGCAACCGAAAAGAGTATCGGATGAGGAGAACGACGA
TGGCTCATTTGGCGAAATCCCAATGCGAGGAAAATTAGTGGTAGACGTCA
GAAATGTCATCCACGAGATGCTGAGAGGCATGATGGTTATGTATTTGGCG
AACGCTGAGACTGTTTTACAAGCAGCGGCTCCTTTGCTCCCGGTTTGCAA
AGAAGATGCCGTCAATGAACAGTTATGGACGATGAGCTCCTCTCCTCTAA
CAGCGTATACGATGGCGGTTGAAAATCTTGTTCAAGCGAATGAACTCATG
GCTGACTTTTTACTTAACTTGAAAAGTTCCGAAACGCATGTATTGGATTC
TAGCGAATTTATCGAGCCGCAAGTAGCTACATGTCATTTAGTTTCACAAG
AAACTCGAGATGTGCTCCATGCTGAACTGGTCGGGAGTTTAAATGAGCTT
GGAGCAGAGGCTCAACAAGGCGTAAAGGCAGCAATTAGTGCTATGCATCT
CCGCGTGTCCGCGATTCTTTTTGCGCCAGAAGCTACCCAGCCGTACACAA
GCACCAACGACCACGTTCAGGCCGTATATGACGGCTTCGAAGGAAGGCAA
GAACCTTTGGACGTTGTGAAACCCAAACCTTCGAAAGCCTTTATCGAGGT
GTGCGAGTTCTTGGATCATCAAATACATTTCATCGTGAAGAATATCAAGA
GTTGCAATCGTGACTTCATTTTAGCCGAAGTGGCATCTTTAACCCGAGAT
TCCATCATGAAGTGTTGGTGCTGTAGTCCTGGTCACATATCCTTATCGGG
GGCAATGCAGATGATCGCAGACAGTCGAATGGTCTTTAAACCGTTTCAAA
AACATGGAATACCAGTTCAAACGCTTCGCTGCTTGCCATCATTAGCCCAA
CTATTTTTGGAATCTCCTGATGGGCTGTGGGCGTGTATCGAAGGATCAGC
ATTGGTTGATGTTGATGCCAGGATACTCGTAGGTCTGCTTAAGAAGAGAA
TTGACTTTGGATCCCGAGAGATCGTCAAAATATGTCAATCTCTAGGTGCA
AGTGAGGAAGAGCTCCTAACGGGACTATAG
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