Gvermi12255.t1 (mRNA) Gracilaria vermiculophylla HapMaleFtJ_2017 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGvermi12255.t1
Unique NameGvermi12255.t1
TypemRNA
OrganismGracilaria vermiculophylla HapMaleFtJ_2017 male (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
Sequence length428
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
ScGOVlb_3404contigScGOVlb_3404:3983502..3984785 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria vermiculophylla HapMaleFtJ_2017 male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog55529.EKX39002
PFAMsHis_Phos_1
Max annot lvl2759|Eukaryota
KEGG koko:K22200
GOsGO:0003674,GO:0003824,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0006793,GO:0006796,GO:0008150,GO:0008152,GO:0009507,GO:0009532,GO:0009536,GO:0009570,GO:0009987,GO:0016311,GO:0016787,GO:0016788,GO:0016791,GO:0042578,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0044237,GO:0044422,GO:0044424,GO:0044434,GO:0044435,GO:0044444,GO:0044446,GO:0044464,GO:0047538
Evalue8.23e-31
EggNOG OGsCOG0588@1|root,KOG0235@2759|Eukaryota
EC3.1.3.63
Descriptionregulation of pentose-phosphate shunt
COG categoryG
BRITEko00000,ko01000
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Gvermi12255Gvermi12255Gracilaria vermiculophylla HapMaleFtJ_2017 malegeneScGOVlb_3404 3983502..3984785 -


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi12255.t1.stop1Gvermi12255.t1.stop1Gracilaria vermiculophylla HapMaleFtJ_2017 malestop_codonScGOVlb_3404 3983502..3983504 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi12255.t1.CDS1Gvermi12255.t1.CDS1Gracilaria vermiculophylla HapMaleFtJ_2017 maleCDSScGOVlb_3404 3983502..3984785 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi12255.t1.exon1Gvermi12255.t1.exon1Gracilaria vermiculophylla HapMaleFtJ_2017 maleexonScGOVlb_3404 3983502..3984785 -


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi12255.t1.start1Gvermi12255.t1.start1Gracilaria vermiculophylla HapMaleFtJ_2017 malestart_codonScGOVlb_3404 3984783..3984785 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi12255.t1Gvermi12255.t1Gracilaria vermiculophylla HapMaleFtJ_2017 malepolypeptideScGOVlb_3404 3983502..3984785 -


Sequences
The following sequences are available for this feature:

mRNA sequence

>Gvermi12255.t1 ID=Gvermi12255.t1|Name=Gvermi12255.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=428bp
MKALGFGSFPSFTTILCAQSDAQRTPETREVRRPLAPTENGSPKFVILMR
HGMTDWNQDGRIQGSLDRSRLNSTGVKQARHAGRFLSGIPFDNILCSPLH
RARQTLELVASVSQNPRLQRLRPELLEDLKEIQVPWQGALRKEVPHGDFR
DFYVMYKHNPYSFSYMGFSPMEDLTRRAQHAWEIIKRSSGNFHLIVAHNQ
MNKALICTALGIQTSLKSWNQGNCCFNLLVLQTNKPPILRLCNGNGLGNL
HYAPKRAFLRPKWTRVFLYQAGNVYGLRQEVRKLPVSRFFCVNHEVHEVD
FEALRKRYLRKKCTSIYLNGEDMSSLYRECHEFLEHIRTKCVGEYIIVRI
KNPRLTSLLFTAALGLEPHESIRFHADTGGVSVIDFNSESGLGAENIRVD
SFNAHANSTNGPLLGYTFGFRRPNEQV*
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spliced messenger RNA

>Gvermi12255.t1 ID=Gvermi12255.t1|Name=Gvermi12255.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=1284bp|location=Sequence derived from alignment at ScGOVlb_3404:3983502..3984785- (Gracilaria vermiculophylla HapMaleFtJ_2017 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGAAGGCTTTGGGATTCGGCTCCTTTCCATCCTTCACCACGATATTATG
CGCTCAATCCGATGCACAGAGGACGCCTGAAACCAGAGAAGTGAGGAGAC
CCTTGGCACCGACCGAAAATGGAAGCCCGAAATTTGTCATTCTGATGCGT
CATGGAATGACCGATTGGAATCAAGACGGTCGAATCCAAGGAAGTCTGGA
CAGGTCTCGACTGAACAGCACAGGAGTGAAGCAAGCCAGGCATGCGGGAA
GGTTTCTCAGCGGAATTCCTTTTGACAACATTTTATGTTCCCCTCTTCAT
CGGGCTCGACAAACTCTTGAGCTCGTTGCTTCTGTATCACAGAATCCTCG
GCTTCAACGACTGCGGCCGGAACTACTGGAGGATTTGAAAGAAATCCAAG
TTCCATGGCAAGGAGCACTAAGAAAGGAAGTGCCTCACGGCGATTTTCGT
GACTTCTATGTCATGTACAAACACAACCCATATTCGTTTTCCTACATGGG
ATTTAGTCCCATGGAGGATCTTACCCGAAGAGCTCAACATGCATGGGAAA
TCATAAAGCGAAGCAGCGGGAACTTTCATCTGATCGTCGCTCATAACCAA
ATGAACAAGGCCTTAATCTGCACGGCACTTGGCATTCAAACGAGTCTAAA
ATCCTGGAACCAAGGCAACTGCTGCTTCAACCTGCTTGTTCTGCAAACAA
ACAAACCCCCCATATTGAGGCTGTGCAACGGGAATGGATTAGGAAATTTG
CACTATGCCCCAAAGCGAGCATTTCTTCGGCCAAAGTGGACTAGAGTGTT
TCTTTACCAAGCAGGAAATGTTTACGGTTTACGTCAAGAAGTGCGCAAGC
TGCCAGTATCAAGATTCTTTTGTGTTAATCACGAAGTTCACGAGGTGGAC
TTTGAAGCGCTGCGCAAACGATATTTGAGGAAGAAGTGCACTTCAATTTA
CTTAAACGGAGAAGATATGAGCTCTCTTTATCGAGAATGCCACGAGTTCT
TGGAGCACATTCGCACAAAATGCGTGGGTGAGTACATCATTGTTCGAATA
AAGAACCCGCGATTGACCTCCCTTCTTTTCACGGCTGCATTGGGATTGGA
GCCACACGAAAGCATTAGATTTCACGCAGATACGGGCGGGGTGAGTGTTA
TCGATTTCAACTCGGAGTCTGGTCTTGGCGCTGAAAATATCCGCGTGGAT
AGTTTCAATGCGCACGCCAATTCAACAAATGGGCCTCTTCTCGGGTACAC
GTTTGGATTTAGGAGACCGAATGAGCAAGTTTGA
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protein sequence of Gvermi12255.t1

>Gvermi12255.t1 ID=Gvermi12255.t1|Name=Gvermi12255.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=polypeptide|length=428bp
MKALGFGSFPSFTTILCAQSDAQRTPETREVRRPLAPTENGSPKFVILMR
HGMTDWNQDGRIQGSLDRSRLNSTGVKQARHAGRFLSGIPFDNILCSPLH
RARQTLELVASVSQNPRLQRLRPELLEDLKEIQVPWQGALRKEVPHGDFR
DFYVMYKHNPYSFSYMGFSPMEDLTRRAQHAWEIIKRSSGNFHLIVAHNQ
MNKALICTALGIQTSLKSWNQGNCCFNLLVLQTNKPPILRLCNGNGLGNL
HYAPKRAFLRPKWTRVFLYQAGNVYGLRQEVRKLPVSRFFCVNHEVHEVD
FEALRKRYLRKKCTSIYLNGEDMSSLYRECHEFLEHIRTKCVGEYIIVRI
KNPRLTSLLFTAALGLEPHESIRFHADTGGVSVIDFNSESGLGAENIRVD
SFNAHANSTNGPLLGYTFGFRRPNEQV*
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mRNA from alignment at ScGOVlb_3404:3983502..3984785-

Legend: polypeptideCDSexonstart_codonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Gvermi12255.t1 ID=Gvermi12255.t1|Name=Gvermi12255.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=1284bp|location=Sequence derived from alignment at ScGOVlb_3404:3983502..3984785- (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
ATGAAGGCTTTGGGATTCGGCTCCTTTCCATCCTTCACCACGATATTATG
CGCTCAATCCGATGCACAGAGGACGCCTGAAACCAGAGAAGTGAGGAGAC
CCTTGGCACCGACCGAAAATGGAAGCCCGAAATTTGTCATTCTGATGCGT
CATGGAATGACCGATTGGAATCAAGACGGTCGAATCCAAGGAAGTCTGGA
CAGGTCTCGACTGAACAGCACAGGAGTGAAGCAAGCCAGGCATGCGGGAA
GGTTTCTCAGCGGAATTCCTTTTGACAACATTTTATGTTCCCCTCTTCAT
CGGGCTCGACAAACTCTTGAGCTCGTTGCTTCTGTATCACAGAATCCTCG
GCTTCAACGACTGCGGCCGGAACTACTGGAGGATTTGAAAGAAATCCAAG
TTCCATGGCAAGGAGCACTAAGAAAGGAAGTGCCTCACGGCGATTTTCGT
GACTTCTATGTCATGTACAAACACAACCCATATTCGTTTTCCTACATGGG
ATTTAGTCCCATGGAGGATCTTACCCGAAGAGCTCAACATGCATGGGAAA
TCATAAAGCGAAGCAGCGGGAACTTTCATCTGATCGTCGCTCATAACCAA
ATGAACAAGGCCTTAATCTGCACGGCACTTGGCATTCAAACGAGTCTAAA
ATCCTGGAACCAAGGCAACTGCTGCTTCAACCTGCTTGTTCTGCAAACAA
ACAAACCCCCCATATTGAGGCTGTGCAACGGGAATGGATTAGGAAATTTG
CACTATGCCCCAAAGCGAGCATTTCTTCGGCCAAAGTGGACTAGAGTGTT
TCTTTACCAAGCAGGAAATGTTTACGGTTTACGTCAAGAAGTGCGCAAGC
TGCCAGTATCAAGATTCTTTTGTGTTAATCACGAAGTTCACGAGGTGGAC
TTTGAAGCGCTGCGCAAACGATATTTGAGGAAGAAGTGCACTTCAATTTA
CTTAAACGGAGAAGATATGAGCTCTCTTTATCGAGAATGCCACGAGTTCT
TGGAGCACATTCGCACAAAATGCGTGGGTGAGTACATCATTGTTCGAATA
AAGAACCCGCGATTGACCTCCCTTCTTTTCACGGCTGCATTGGGATTGGA
GCCACACGAAAGCATTAGATTTCACGCAGATACGGGCGGGGTGAGTGTTA
TCGATTTCAACTCGGAGTCTGGTCTTGGCGCTGAAAATATCCGCGTGGAT
AGTTTCAATGCGCACGCCAATTCAACAAATGGGCCTCTTCTCGGGTACAC
GTTTGGATTTAGGAGACCGAATGAGCAAGTTTGA
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Coding sequence (CDS) from alignment at ScGOVlb_3404:3983502..3984785-

>Gvermi12255.t1 ID=Gvermi12255.t1|Name=Gvermi12255.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=CDS|length=1284bp|location=Sequence derived from alignment at ScGOVlb_3404:3983502..3984785- (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
ATGAAGGCTTTGGGATTCGGCTCCTTTCCATCCTTCACCACGATATTATG
CGCTCAATCCGATGCACAGAGGACGCCTGAAACCAGAGAAGTGAGGAGAC
CCTTGGCACCGACCGAAAATGGAAGCCCGAAATTTGTCATTCTGATGCGT
CATGGAATGACCGATTGGAATCAAGACGGTCGAATCCAAGGAAGTCTGGA
CAGGTCTCGACTGAACAGCACAGGAGTGAAGCAAGCCAGGCATGCGGGAA
GGTTTCTCAGCGGAATTCCTTTTGACAACATTTTATGTTCCCCTCTTCAT
CGGGCTCGACAAACTCTTGAGCTCGTTGCTTCTGTATCACAGAATCCTCG
GCTTCAACGACTGCGGCCGGAACTACTGGAGGATTTGAAAGAAATCCAAG
TTCCATGGCAAGGAGCACTAAGAAAGGAAGTGCCTCACGGCGATTTTCGT
GACTTCTATGTCATGTACAAACACAACCCATATTCGTTTTCCTACATGGG
ATTTAGTCCCATGGAGGATCTTACCCGAAGAGCTCAACATGCATGGGAAA
TCATAAAGCGAAGCAGCGGGAACTTTCATCTGATCGTCGCTCATAACCAA
ATGAACAAGGCCTTAATCTGCACGGCACTTGGCATTCAAACGAGTCTAAA
ATCCTGGAACCAAGGCAACTGCTGCTTCAACCTGCTTGTTCTGCAAACAA
ACAAACCCCCCATATTGAGGCTGTGCAACGGGAATGGATTAGGAAATTTG
CACTATGCCCCAAAGCGAGCATTTCTTCGGCCAAAGTGGACTAGAGTGTT
TCTTTACCAAGCAGGAAATGTTTACGGTTTACGTCAAGAAGTGCGCAAGC
TGCCAGTATCAAGATTCTTTTGTGTTAATCACGAAGTTCACGAGGTGGAC
TTTGAAGCGCTGCGCAAACGATATTTGAGGAAGAAGTGCACTTCAATTTA
CTTAAACGGAGAAGATATGAGCTCTCTTTATCGAGAATGCCACGAGTTCT
TGGAGCACATTCGCACAAAATGCGTGGGTGAGTACATCATTGTTCGAATA
AAGAACCCGCGATTGACCTCCCTTCTTTTCACGGCTGCATTGGGATTGGA
GCCACACGAAAGCATTAGATTTCACGCAGATACGGGCGGGGTGAGTGTTA
TCGATTTCAACTCGGAGTCTGGTCTTGGCGCTGAAAATATCCGCGTGGAT
AGTTTCAATGCGCACGCCAATTCAACAAATGGGCCTCTTCTCGGGTACAC
GTTTGGATTTAGGAGACCGAATGAGCAAGTTTGA
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