Gvermi12255.t1 (mRNA) Gracilaria vermiculophylla HapMaleFtJ_2017 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	Gvermi12255.t1
Unique Name	Gvermi12255.t1
Type	mRNA
Organism	Gracilaria vermiculophylla HapMaleFtJ_2017 male (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
Sequence length	428

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
ScGOVlb_3404	contig	ScGOVlb_3404:3983502..3984785 -

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gracilaria vermiculophylla HapMaleFtJ_2017 male OGS1.0	2022-05-09

Properties


Property Name	Value
Seed ortholog	55529.EKX39002
PFAMs	His_Phos_1
Max annot lvl	2759\|Eukaryota
KEGG ko	ko:K22200
GOs	GO:0003674,GO:0003824,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0006793,GO:0006796,GO:0008150,GO:0008152,GO:0009507,GO:0009532,GO:0009536,GO:0009570,GO:0009987,GO:0016311,GO:0016787,GO:0016788,GO:0016791,GO:0042578,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0044237,GO:0044422,GO:0044424,GO:0044434,GO:0044435,GO:0044444,GO:0044446,GO:0044464,GO:0047538
Evalue	8.23e-31
EggNOG OGs	COG0588@1\|root,KOG0235@2759\|Eukaryota
EC	3.1.3.63
Description	regulation of pentose-phosphate shunt
COG category	G
BRITE	ko00000,ko01000

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
Gvermi12255	Gvermi12255	Gracilaria vermiculophylla HapMaleFtJ_2017 male	gene	ScGOVlb_3404 3983502..3984785 -

The following stop_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gvermi12255.t1.stop1	Gvermi12255.t1.stop1	Gracilaria vermiculophylla HapMaleFtJ_2017 male	stop_codon	ScGOVlb_3404 3983502..3983504 -

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gvermi12255.t1.CDS1	Gvermi12255.t1.CDS1	Gracilaria vermiculophylla HapMaleFtJ_2017 male	CDS	ScGOVlb_3404 3983502..3984785 -

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gvermi12255.t1.exon1	Gvermi12255.t1.exon1	Gracilaria vermiculophylla HapMaleFtJ_2017 male	exon	ScGOVlb_3404 3983502..3984785 -

The following start_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gvermi12255.t1.start1	Gvermi12255.t1.start1	Gracilaria vermiculophylla HapMaleFtJ_2017 male	start_codon	ScGOVlb_3404 3984783..3984785 -

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gvermi12255.t1	Gvermi12255.t1	Gracilaria vermiculophylla HapMaleFtJ_2017 male	polypeptide	ScGOVlb_3404 3983502..3984785 -

Sequences

The following sequences are available for this feature:

mRNA sequence
mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at ScGOVlb_3404:3983502..3984785-
coding sequence from alignment at ScGOVlb_3404:3983502..3984785-

mRNA sequence

>Gvermi12255.t1 ID=Gvermi12255.t1|Name=Gvermi12255.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=428bp
MKALGFGSFPSFTTILCAQSDAQRTPETREVRRPLAPTENGSPKFVILMR
HGMTDWNQDGRIQGSLDRSRLNSTGVKQARHAGRFLSGIPFDNILCSPLH
RARQTLELVASVSQNPRLQRLRPELLEDLKEIQVPWQGALRKEVPHGDFR
DFYVMYKHNPYSFSYMGFSPMEDLTRRAQHAWEIIKRSSGNFHLIVAHNQ
MNKALICTALGIQTSLKSWNQGNCCFNLLVLQTNKPPILRLCNGNGLGNL
HYAPKRAFLRPKWTRVFLYQAGNVYGLRQEVRKLPVSRFFCVNHEVHEVD
FEALRKRYLRKKCTSIYLNGEDMSSLYRECHEFLEHIRTKCVGEYIIVRI
KNPRLTSLLFTAALGLEPHESIRFHADTGGVSVIDFNSESGLGAENIRVD
SFNAHANSTNGPLLGYTFGFRRPNEQV*

spliced messenger RNA

>Gvermi12255.t1 ID=Gvermi12255.t1|Name=Gvermi12255.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=1284bp|location=Sequence derived from alignment at ScGOVlb_3404:3983502..3984785- (Gracilaria vermiculophylla HapMaleFtJ_2017 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGAAGGCTTTGGGATTCGGCTCCTTTCCATCCTTCACCACGATATTATG
CGCTCAATCCGATGCACAGAGGACGCCTGAAACCAGAGAAGTGAGGAGAC
CCTTGGCACCGACCGAAAATGGAAGCCCGAAATTTGTCATTCTGATGCGT
CATGGAATGACCGATTGGAATCAAGACGGTCGAATCCAAGGAAGTCTGGA
CAGGTCTCGACTGAACAGCACAGGAGTGAAGCAAGCCAGGCATGCGGGAA
GGTTTCTCAGCGGAATTCCTTTTGACAACATTTTATGTTCCCCTCTTCAT
CGGGCTCGACAAACTCTTGAGCTCGTTGCTTCTGTATCACAGAATCCTCG
GCTTCAACGACTGCGGCCGGAACTACTGGAGGATTTGAAAGAAATCCAAG
TTCCATGGCAAGGAGCACTAAGAAAGGAAGTGCCTCACGGCGATTTTCGT
GACTTCTATGTCATGTACAAACACAACCCATATTCGTTTTCCTACATGGG
ATTTAGTCCCATGGAGGATCTTACCCGAAGAGCTCAACATGCATGGGAAA
TCATAAAGCGAAGCAGCGGGAACTTTCATCTGATCGTCGCTCATAACCAA
ATGAACAAGGCCTTAATCTGCACGGCACTTGGCATTCAAACGAGTCTAAA
ATCCTGGAACCAAGGCAACTGCTGCTTCAACCTGCTTGTTCTGCAAACAA
ACAAACCCCCCATATTGAGGCTGTGCAACGGGAATGGATTAGGAAATTTG
CACTATGCCCCAAAGCGAGCATTTCTTCGGCCAAAGTGGACTAGAGTGTT
TCTTTACCAAGCAGGAAATGTTTACGGTTTACGTCAAGAAGTGCGCAAGC
TGCCAGTATCAAGATTCTTTTGTGTTAATCACGAAGTTCACGAGGTGGAC
TTTGAAGCGCTGCGCAAACGATATTTGAGGAAGAAGTGCACTTCAATTTA
CTTAAACGGAGAAGATATGAGCTCTCTTTATCGAGAATGCCACGAGTTCT
TGGAGCACATTCGCACAAAATGCGTGGGTGAGTACATCATTGTTCGAATA
AAGAACCCGCGATTGACCTCCCTTCTTTTCACGGCTGCATTGGGATTGGA
GCCACACGAAAGCATTAGATTTCACGCAGATACGGGCGGGGTGAGTGTTA
TCGATTTCAACTCGGAGTCTGGTCTTGGCGCTGAAAATATCCGCGTGGAT
AGTTTCAATGCGCACGCCAATTCAACAAATGGGCCTCTTCTCGGGTACAC
GTTTGGATTTAGGAGACCGAATGAGCAAGTTTGA

protein sequence of Gvermi12255.t1

>Gvermi12255.t1 ID=Gvermi12255.t1|Name=Gvermi12255.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=polypeptide|length=428bp
MKALGFGSFPSFTTILCAQSDAQRTPETREVRRPLAPTENGSPKFVILMR
HGMTDWNQDGRIQGSLDRSRLNSTGVKQARHAGRFLSGIPFDNILCSPLH
RARQTLELVASVSQNPRLQRLRPELLEDLKEIQVPWQGALRKEVPHGDFR
DFYVMYKHNPYSFSYMGFSPMEDLTRRAQHAWEIIKRSSGNFHLIVAHNQ
MNKALICTALGIQTSLKSWNQGNCCFNLLVLQTNKPPILRLCNGNGLGNL
HYAPKRAFLRPKWTRVFLYQAGNVYGLRQEVRKLPVSRFFCVNHEVHEVD
FEALRKRYLRKKCTSIYLNGEDMSSLYRECHEFLEHIRTKCVGEYIIVRI
KNPRLTSLLFTAALGLEPHESIRFHADTGGVSVIDFNSESGLGAENIRVD
SFNAHANSTNGPLLGYTFGFRRPNEQV*

mRNA from alignment at ScGOVlb_3404:3983502..3984785-

Legend: polypeptideCDSexonstart_codonstop_codon

Hold the cursor over a type above to highlight its positions in the sequence below.

>Gvermi12255.t1 ID=Gvermi12255.t1|Name=Gvermi12255.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=1284bp|location=Sequence derived from alignment at ScGOVlb_3404:3983502..3984785- (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
ATGAAGGCTTTGGGATTCGGCTCCTTTCCATCCTTCACCACGATATTATG
CGCTCAATCCGATGCACAGAGGACGCCTGAAACCAGAGAAGTGAGGAGAC
CCTTGGCACCGACCGAAAATGGAAGCCCGAAATTTGTCATTCTGATGCGT
CATGGAATGACCGATTGGAATCAAGACGGTCGAATCCAAGGAAGTCTGGA
CAGGTCTCGACTGAACAGCACAGGAGTGAAGCAAGCCAGGCATGCGGGAA
GGTTTCTCAGCGGAATTCCTTTTGACAACATTTTATGTTCCCCTCTTCAT
CGGGCTCGACAAACTCTTGAGCTCGTTGCTTCTGTATCACAGAATCCTCG
GCTTCAACGACTGCGGCCGGAACTACTGGAGGATTTGAAAGAAATCCAAG
TTCCATGGCAAGGAGCACTAAGAAAGGAAGTGCCTCACGGCGATTTTCGT
GACTTCTATGTCATGTACAAACACAACCCATATTCGTTTTCCTACATGGG
ATTTAGTCCCATGGAGGATCTTACCCGAAGAGCTCAACATGCATGGGAAA
TCATAAAGCGAAGCAGCGGGAACTTTCATCTGATCGTCGCTCATAACCAA
ATGAACAAGGCCTTAATCTGCACGGCACTTGGCATTCAAACGAGTCTAAA
ATCCTGGAACCAAGGCAACTGCTGCTTCAACCTGCTTGTTCTGCAAACAA
ACAAACCCCCCATATTGAGGCTGTGCAACGGGAATGGATTAGGAAATTTG
CACTATGCCCCAAAGCGAGCATTTCTTCGGCCAAAGTGGACTAGAGTGTT
TCTTTACCAAGCAGGAAATGTTTACGGTTTACGTCAAGAAGTGCGCAAGC
TGCCAGTATCAAGATTCTTTTGTGTTAATCACGAAGTTCACGAGGTGGAC
TTTGAAGCGCTGCGCAAACGATATTTGAGGAAGAAGTGCACTTCAATTTA
CTTAAACGGAGAAGATATGAGCTCTCTTTATCGAGAATGCCACGAGTTCT
TGGAGCACATTCGCACAAAATGCGTGGGTGAGTACATCATTGTTCGAATA
AAGAACCCGCGATTGACCTCCCTTCTTTTCACGGCTGCATTGGGATTGGA
GCCACACGAAAGCATTAGATTTCACGCAGATACGGGCGGGGTGAGTGTTA
TCGATTTCAACTCGGAGTCTGGTCTTGGCGCTGAAAATATCCGCGTGGAT
AGTTTCAATGCGCACGCCAATTCAACAAATGGGCCTCTTCTCGGGTACAC
GTTTGGATTTAGGAGACCGAATGAGCAAGTTTGA

Coding sequence (CDS) from alignment at ScGOVlb_3404:3983502..3984785-

>Gvermi12255.t1 ID=Gvermi12255.t1|Name=Gvermi12255.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=CDS|length=1284bp|location=Sequence derived from alignment at ScGOVlb_3404:3983502..3984785- (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
ATGAAGGCTTTGGGATTCGGCTCCTTTCCATCCTTCACCACGATATTATG
CGCTCAATCCGATGCACAGAGGACGCCTGAAACCAGAGAAGTGAGGAGAC
CCTTGGCACCGACCGAAAATGGAAGCCCGAAATTTGTCATTCTGATGCGT
CATGGAATGACCGATTGGAATCAAGACGGTCGAATCCAAGGAAGTCTGGA
CAGGTCTCGACTGAACAGCACAGGAGTGAAGCAAGCCAGGCATGCGGGAA
GGTTTCTCAGCGGAATTCCTTTTGACAACATTTTATGTTCCCCTCTTCAT
CGGGCTCGACAAACTCTTGAGCTCGTTGCTTCTGTATCACAGAATCCTCG
GCTTCAACGACTGCGGCCGGAACTACTGGAGGATTTGAAAGAAATCCAAG
TTCCATGGCAAGGAGCACTAAGAAAGGAAGTGCCTCACGGCGATTTTCGT
GACTTCTATGTCATGTACAAACACAACCCATATTCGTTTTCCTACATGGG
ATTTAGTCCCATGGAGGATCTTACCCGAAGAGCTCAACATGCATGGGAAA
TCATAAAGCGAAGCAGCGGGAACTTTCATCTGATCGTCGCTCATAACCAA
ATGAACAAGGCCTTAATCTGCACGGCACTTGGCATTCAAACGAGTCTAAA
ATCCTGGAACCAAGGCAACTGCTGCTTCAACCTGCTTGTTCTGCAAACAA
ACAAACCCCCCATATTGAGGCTGTGCAACGGGAATGGATTAGGAAATTTG
CACTATGCCCCAAAGCGAGCATTTCTTCGGCCAAAGTGGACTAGAGTGTT
TCTTTACCAAGCAGGAAATGTTTACGGTTTACGTCAAGAAGTGCGCAAGC
TGCCAGTATCAAGATTCTTTTGTGTTAATCACGAAGTTCACGAGGTGGAC
TTTGAAGCGCTGCGCAAACGATATTTGAGGAAGAAGTGCACTTCAATTTA
CTTAAACGGAGAAGATATGAGCTCTCTTTATCGAGAATGCCACGAGTTCT
TGGAGCACATTCGCACAAAATGCGTGGGTGAGTACATCATTGTTCGAATA
AAGAACCCGCGATTGACCTCCCTTCTTTTCACGGCTGCATTGGGATTGGA
GCCACACGAAAGCATTAGATTTCACGCAGATACGGGCGGGGTGAGTGTTA
TCGATTTCAACTCGGAGTCTGGTCTTGGCGCTGAAAATATCCGCGTGGAT
AGTTTCAATGCGCACGCCAATTCAACAAATGGGCCTCTTCTCGGGTACAC
GTTTGGATTTAGGAGACCGAATGAGCAAGTTTGA