Gvermi12295.t1 (mRNA) Gracilaria vermiculophylla HapMaleFtJ_2017 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGvermi12295.t1
Unique NameGvermi12295.t1
TypemRNA
OrganismGracilaria vermiculophylla HapMaleFtJ_2017 male (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
Sequence length447
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
ScGOVlb_3404contigScGOVlb_3404:4123459..4124868 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria vermiculophylla HapMaleFtJ_2017 male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog42345.XP_008781877.1
PFAMsPeptidase_C14,zf-LSD1
Max annot lvl35493|Streptophyta
GOsGO:0003674,GO:0003824,GO:0004175,GO:0004197,GO:0006508,GO:0006807,GO:0008150,GO:0008152,GO:0008233,GO:0008234,GO:0010941,GO:0010942,GO:0016787,GO:0019538,GO:0043067,GO:0043068,GO:0043170,GO:0044238,GO:0048518,GO:0048522,GO:0050789,GO:0050794,GO:0065007,GO:0070011,GO:0071704,GO:0140096,GO:1901564
Evalue9.69e-40
EggNOG OGsKOG1546@1|root,KOG1546@2759|Eukaryota,37S6V@33090|Viridiplantae,3GANI@35493|Streptophyta,3KTA4@4447|Liliopsida
DescriptionCaspase domain
COG categoryDO
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Gvermi12295Gvermi12295Gracilaria vermiculophylla HapMaleFtJ_2017 malegeneScGOVlb_3404 4123459..4124868 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi12295.t1Gvermi12295.t1Gracilaria vermiculophylla HapMaleFtJ_2017 malepolypeptideScGOVlb_3404 4123459..4124868 +


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi12295.t1.start1Gvermi12295.t1.start1Gracilaria vermiculophylla HapMaleFtJ_2017 malestart_codonScGOVlb_3404 4123459..4123461 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi12295.t1.CDS1Gvermi12295.t1.CDS1Gracilaria vermiculophylla HapMaleFtJ_2017 maleCDSScGOVlb_3404 4123459..4124193 +
Gvermi12295.t1.CDS2Gvermi12295.t1.CDS2Gracilaria vermiculophylla HapMaleFtJ_2017 maleCDSScGOVlb_3404 4124263..4124868 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi12295.t1.exon1Gvermi12295.t1.exon1Gracilaria vermiculophylla HapMaleFtJ_2017 maleexonScGOVlb_3404 4123459..4124193 +
Gvermi12295.t1.exon2Gvermi12295.t1.exon2Gracilaria vermiculophylla HapMaleFtJ_2017 maleexonScGOVlb_3404 4124263..4124868 +


The following intron feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi12295.t1.intron1Gvermi12295.t1.intron1Gracilaria vermiculophylla HapMaleFtJ_2017 maleintronScGOVlb_3404 4124194..4124262 +


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi12295.t1.stop1Gvermi12295.t1.stop1Gracilaria vermiculophylla HapMaleFtJ_2017 malestop_codonScGOVlb_3404 4124866..4124868 +


Sequences
The following sequences are available for this feature:

mRNA sequence

>Gvermi12295.t1 ID=Gvermi12295.t1|Name=Gvermi12295.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=447bp
MSQKRSPAQRELLRRLRSSGPNLGALPRPAPPTTPSYGILSPASTLRRAA
SDSVTSPSIRHLSPANTPYKTTTAPSSIPRPRFTGESLSPANTPYKTASA
PPSIPHPRFTGESLSPAARDFVVRATTSYDTKLRRRKALLIGIGYRNHKH
LTPVPGARNDVLAMFELLSGPLFGFPRANIHVLCDEPLTADICGVRQPTS
FQIIREFGWLTDGVVAGDSVVFFYAGHGEMVQDTSGDEIETGYDQCIMPI
DFVPRPLYDDEGRLTIRSVGPILDDVIYNRLVKAVPEGAKVTAIVDACKS
GTICDLPVVYDENCSPRFRNGERLPPRHLKYQHKAAGGCVLFSGSADHQL
SADMVIPVNLGNGEGKTQQSFGIMTKSFVDAVYEMCQSRDPNYDGVESWS
YGALLHRIKALVKERCTQFVPNYLEEQEPQLSSSHEFDVWTTRFSM*
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spliced messenger RNA

>Gvermi12295.t1 ID=Gvermi12295.t1|Name=Gvermi12295.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=1341bp|location=Sequence derived from alignment at ScGOVlb_3404:4123459..4124868+ (Gracilaria vermiculophylla HapMaleFtJ_2017 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGAGCCAAAAGCGCTCCCCGGCACAGAGAGAGCTTCTTCGACGTCTACG
CTCCTCCGGCCCCAATCTTGGTGCGCTTCCACGCCCTGCCCCTCCCACCA
CACCTTCCTACGGAATCCTCTCTCCGGCAAGTACCCTCCGCAGAGCCGCT
TCGGATTCTGTCACATCACCCTCCATCAGACACCTTTCTCCGGCGAACAC
CCCTTACAAGACAACCACTGCTCCGTCGTCCATCCCACGTCCCCGCTTCA
CAGGGGAGTCCCTATCTCCGGCGAACACCCCTTACAAGACAGCCTCTGCT
CCGCCGTCCATCCCGCATCCGCGCTTCACAGGGGAGTCCCTTTCTCCGGC
AGCCCGAGATTTTGTAGTTCGTGCCACCACCTCTTATGACACCAAGCTGC
GTCGCCGCAAGGCGTTGCTTATCGGAATCGGCTATCGAAATCACAAGCAC
CTCACCCCTGTACCAGGCGCCCGAAATGATGTGCTAGCCATGTTCGAGTT
ACTTTCAGGGCCCTTGTTCGGCTTTCCGCGCGCTAACATTCATGTCCTGT
GCGACGAGCCGTTGACTGCGGATATTTGCGGAGTTCGGCAGCCAACTAGT
TTCCAAATTATTCGCGAGTTCGGTTGGTTGACAGATGGAGTCGTCGCCGG
TGATAGCGTTGTCTTCTTCTACGCTGGTCATGGTGAGATGGTGCAAGATA
CATCTGGTGATGAAATCGAGACTGGTTACGATCAGTGCATCATGCCCATT
GACTTCGTACCGAGGCCCTTGTACGATGATGAAGGCAGGTTAACAATTCG
CAGTGTCGGTCCCATATTGGATGATGTTATTTACAACCGCCTTGTAAAGG
CTGTGCCAGAGGGCGCAAAAGTAACTGCCATCGTCGACGCATGTAAGAGC
GGAACAATATGCGACCTTCCCGTGGTGTACGATGAAAACTGTTCTCCTAG
ATTTCGGAATGGTGAACGGTTACCTCCACGGCATCTCAAGTATCAGCACA
AAGCTGCTGGAGGCTGTGTTCTGTTCAGCGGATCTGCAGACCATCAGCTA
TCAGCTGATATGGTTATTCCCGTGAATCTAGGGAACGGTGAGGGAAAAAC
TCAGCAAAGTTTCGGCATAATGACGAAAAGCTTTGTGGATGCAGTATACG
AGATGTGCCAATCGCGCGATCCTAACTATGATGGAGTGGAGAGTTGGAGT
TACGGTGCCTTACTTCATCGGATAAAAGCGCTTGTTAAAGAAAGATGTAC
GCAGTTCGTCCCAAATTATCTGGAAGAACAGGAGCCACAGCTATCCTCCA
GCCATGAGTTTGACGTATGGACGACCAGGTTCTCCATGTAA
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protein sequence of Gvermi12295.t1

>Gvermi12295.t1 ID=Gvermi12295.t1|Name=Gvermi12295.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=polypeptide|length=447bp
MSQKRSPAQRELLRRLRSSGPNLGALPRPAPPTTPSYGILSPASTLRRAA
SDSVTSPSIRHLSPANTPYKTTTAPSSIPRPRFTGESLSPANTPYKTASA
PPSIPHPRFTGESLSPAARDFVVRATTSYDTKLRRRKALLIGIGYRNHKH
LTPVPGARNDVLAMFELLSGPLFGFPRANIHVLCDEPLTADICGVRQPTS
FQIIREFGWLTDGVVAGDSVVFFYAGHGEMVQDTSGDEIETGYDQCIMPI
DFVPRPLYDDEGRLTIRSVGPILDDVIYNRLVKAVPEGAKVTAIVDACKS
GTICDLPVVYDENCSPRFRNGERLPPRHLKYQHKAAGGCVLFSGSADHQL
SADMVIPVNLGNGEGKTQQSFGIMTKSFVDAVYEMCQSRDPNYDGVESWS
YGALLHRIKALVKERCTQFVPNYLEEQEPQLSSSHEFDVWTTRFSM*
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mRNA from alignment at ScGOVlb_3404:4123459..4124868+

Legend: polypeptidestart_codonCDSexonintronstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Gvermi12295.t1 ID=Gvermi12295.t1|Name=Gvermi12295.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=1410bp|location=Sequence derived from alignment at ScGOVlb_3404:4123459..4124868+ (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
ATGAGCCAAAAGCGCTCCCCGGCACAGAGAGAGCTTCTTCGACGTCTACG
CTCCTCCGGCCCCAATCTTGGTGCGCTTCCACGCCCTGCCCCTCCCACCA
CACCTTCCTACGGAATCCTCTCTCCGGCAAGTACCCTCCGCAGAGCCGCT
TCGGATTCTGTCACATCACCCTCCATCAGACACCTTTCTCCGGCGAACAC
CCCTTACAAGACAACCACTGCTCCGTCGTCCATCCCACGTCCCCGCTTCA
CAGGGGAGTCCCTATCTCCGGCGAACACCCCTTACAAGACAGCCTCTGCT
CCGCCGTCCATCCCGCATCCGCGCTTCACAGGGGAGTCCCTTTCTCCGGC
AGCCCGAGATTTTGTAGTTCGTGCCACCACCTCTTATGACACCAAGCTGC
GTCGCCGCAAGGCGTTGCTTATCGGAATCGGCTATCGAAATCACAAGCAC
CTCACCCCTGTACCAGGCGCCCGAAATGATGTGCTAGCCATGTTCGAGTT
ACTTTCAGGGCCCTTGTTCGGCTTTCCGCGCGCTAACATTCATGTCCTGT
GCGACGAGCCGTTGACTGCGGATATTTGCGGAGTTCGGCAGCCAACTAGT
TTCCAAATTATTCGCGAGTTCGGTTGGTTGACAGATGGAGTCGTCGCCGG
TGATAGCGTTGTCTTCTTCTACGCTGGTCATGGTGAGATGGTGCAAGATA
CATCTGGTGATGAAATCGAGACTGGTTACGATCAGGTATGTAGCCTTAAT
TTTTGCATTAAATGTCGTGTCGTTCTAACTGTTCCTTCTTCATGTTTTCC
ACAGTGCATCATGCCCATTGACTTCGTACCGAGGCCCTTGTACGATGATG
AAGGCAGGTTAACAATTCGCAGTGTCGGTCCCATATTGGATGATGTTATT
TACAACCGCCTTGTAAAGGCTGTGCCAGAGGGCGCAAAAGTAACTGCCAT
CGTCGACGCATGTAAGAGCGGAACAATATGCGACCTTCCCGTGGTGTACG
ATGAAAACTGTTCTCCTAGATTTCGGAATGGTGAACGGTTACCTCCACGG
CATCTCAAGTATCAGCACAAAGCTGCTGGAGGCTGTGTTCTGTTCAGCGG
ATCTGCAGACCATCAGCTATCAGCTGATATGGTTATTCCCGTGAATCTAG
GGAACGGTGAGGGAAAAACTCAGCAAAGTTTCGGCATAATGACGAAAAGC
TTTGTGGATGCAGTATACGAGATGTGCCAATCGCGCGATCCTAACTATGA
TGGAGTGGAGAGTTGGAGTTACGGTGCCTTACTTCATCGGATAAAAGCGC
TTGTTAAAGAAAGATGTACGCAGTTCGTCCCAAATTATCTGGAAGAACAG
GAGCCACAGCTATCCTCCAGCCATGAGTTTGACGTATGGACGACCAGGTT
CTCCATGTAA
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Coding sequence (CDS) from alignment at ScGOVlb_3404:4123459..4124868+

>Gvermi12295.t1 ID=Gvermi12295.t1|Name=Gvermi12295.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=CDS|length=1341bp|location=Sequence derived from alignment at ScGOVlb_3404:4123459..4124868+ (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
ATGAGCCAAAAGCGCTCCCCGGCACAGAGAGAGCTTCTTCGACGTCTACG
CTCCTCCGGCCCCAATCTTGGTGCGCTTCCACGCCCTGCCCCTCCCACCA
CACCTTCCTACGGAATCCTCTCTCCGGCAAGTACCCTCCGCAGAGCCGCT
TCGGATTCTGTCACATCACCCTCCATCAGACACCTTTCTCCGGCGAACAC
CCCTTACAAGACAACCACTGCTCCGTCGTCCATCCCACGTCCCCGCTTCA
CAGGGGAGTCCCTATCTCCGGCGAACACCCCTTACAAGACAGCCTCTGCT
CCGCCGTCCATCCCGCATCCGCGCTTCACAGGGGAGTCCCTTTCTCCGGC
AGCCCGAGATTTTGTAGTTCGTGCCACCACCTCTTATGACACCAAGCTGC
GTCGCCGCAAGGCGTTGCTTATCGGAATCGGCTATCGAAATCACAAGCAC
CTCACCCCTGTACCAGGCGCCCGAAATGATGTGCTAGCCATGTTCGAGTT
ACTTTCAGGGCCCTTGTTCGGCTTTCCGCGCGCTAACATTCATGTCCTGT
GCGACGAGCCGTTGACTGCGGATATTTGCGGAGTTCGGCAGCCAACTAGT
TTCCAAATTATTCGCGAGTTCGGTTGGTTGACAGATGGAGTCGTCGCCGG
TGATAGCGTTGTCTTCTTCTACGCTGGTCATGGTGAGATGGTGCAAGATA
CATCTGGTGATGAAATCGAGACTGGTTACGATCAGTGCATCATGCCCATT
GACTTCGTACCGAGGCCCTTGTACGATGATGAAGGCAGGTTAACAATTCG
CAGTGTCGGTCCCATATTGGATGATGTTATTTACAACCGCCTTGTAAAGG
CTGTGCCAGAGGGCGCAAAAGTAACTGCCATCGTCGACGCATGTAAGAGC
GGAACAATATGCGACCTTCCCGTGGTGTACGATGAAAACTGTTCTCCTAG
ATTTCGGAATGGTGAACGGTTACCTCCACGGCATCTCAAGTATCAGCACA
AAGCTGCTGGAGGCTGTGTTCTGTTCAGCGGATCTGCAGACCATCAGCTA
TCAGCTGATATGGTTATTCCCGTGAATCTAGGGAACGGTGAGGGAAAAAC
TCAGCAAAGTTTCGGCATAATGACGAAAAGCTTTGTGGATGCAGTATACG
AGATGTGCCAATCGCGCGATCCTAACTATGATGGAGTGGAGAGTTGGAGT
TACGGTGCCTTACTTCATCGGATAAAAGCGCTTGTTAAAGAAAGATGTAC
GCAGTTCGTCCCAAATTATCTGGAAGAACAGGAGCCACAGCTATCCTCCA
GCCATGAGTTTGACGTATGGACGACCAGGTTCTCCATGTAA
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