Gvermi12439.t1 (mRNA) Gracilaria vermiculophylla HapMaleFtJ_2017 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGvermi12439.t1
Unique NameGvermi12439.t1
TypemRNA
OrganismGracilaria vermiculophylla HapMaleFtJ_2017 male (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
Sequence length608
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
ScGOVlb_3404contigScGOVlb_3404:4751038..4754485 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria vermiculophylla HapMaleFtJ_2017 male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog130081.XP_005705580.1
PFAMsMFS_1
Max annot lvl2759|Eukaryota
KEGG koko:K15378
KEGG TC2.A.2.4,2.A.2.6
Evalue5.51e-41
EggNOG OGsKOG0637@1|root,KOG0637@2759|Eukaryota
Descriptionsucrose transmembrane transporter activity
COG categoryS
BRITEko00000,ko02000
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Gvermi12439Gvermi12439Gracilaria vermiculophylla HapMaleFtJ_2017 malegeneScGOVlb_3404 4751038..4754485 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi12439.t1Gvermi12439.t1Gracilaria vermiculophylla HapMaleFtJ_2017 malepolypeptideScGOVlb_3404 4751038..4754485 -


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi12439.t1.stop1Gvermi12439.t1.stop1Gracilaria vermiculophylla HapMaleFtJ_2017 malestop_codonScGOVlb_3404 4751038..4751040 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi12439.t1.CDS1Gvermi12439.t1.CDS1Gracilaria vermiculophylla HapMaleFtJ_2017 maleCDSScGOVlb_3404 4751038..4752022 -
Gvermi12439.t1.CDS2Gvermi12439.t1.CDS2Gracilaria vermiculophylla HapMaleFtJ_2017 maleCDSScGOVlb_3404 4753647..4754485 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi12439.t1.exon1Gvermi12439.t1.exon1Gracilaria vermiculophylla HapMaleFtJ_2017 maleexonScGOVlb_3404 4751038..4752022 -
Gvermi12439.t1.exon2Gvermi12439.t1.exon2Gracilaria vermiculophylla HapMaleFtJ_2017 maleexonScGOVlb_3404 4753647..4754485 -


The following intron feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi12439.t1.intron1Gvermi12439.t1.intron1Gracilaria vermiculophylla HapMaleFtJ_2017 maleintronScGOVlb_3404 4752023..4753646 -


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi12439.t1.start1Gvermi12439.t1.start1Gracilaria vermiculophylla HapMaleFtJ_2017 malestart_codonScGOVlb_3404 4754483..4754485 -


Sequences
The following sequences are available for this feature:

mRNA sequence

>Gvermi12439.t1 ID=Gvermi12439.t1|Name=Gvermi12439.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=608bp
MGSRQHRQLISLVHAVGKGRNFAAPSTPTSPATSPPPDAPPPNAPPPKRL
SPPQGALPLHVPPPMLCTLAMAGIQLCYAAQINLGTAHLVHLGLRHSHAS
LAWLAGPLSGLLFQPLIGALSDKCAHPLGRRRPFLIVGCVCTSLSLLAFA
NAQQLAAMLAAKHAALRVAIAAFFALDFSVQAIQAPLRALVIDVMPASKL
SAANSCIGLYCGIGNLIGGCLVALPWSTWFPRVTNIQMVFALSALLLVIS
TALTVVSTPEQALMREASASRSSSSGRLASATGASFAFFFATGRCGTQHL
SRVLRSRRAPAPAAYVTHEEEHASLRTSVVVQRHYRALAAAPSEALFNAS
ALRYVTATKLPFYRLLLRRHAARRLVYTGHVPLAFGLAPALLRALPPGRV
RIVRLRRDRIATAVSLMALGPEREDPWGESSPPPASNASRVAAAAAAAAA
AFALPPPAPTARWFPRPTDAFVRLRVSPAAWRAFNRFQRWLWYVDDVECR
WQALLHASAHRFSWMEESLDTLGAMDGGRAWARLADFIGVDVDWRRVATR
HNSIQHKQRRKTDASEAQLRQWDEQYRQLVGECALTDSLSYGWRHFALRP
LQPRPAR*
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spliced messenger RNA

>Gvermi12439.t1 ID=Gvermi12439.t1|Name=Gvermi12439.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=1824bp|location=Sequence derived from alignment at ScGOVlb_3404:4751038..4754485- (Gracilaria vermiculophylla HapMaleFtJ_2017 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGGGCTCCCGGCAGCACCGCCAGCTCATCTCGCTGGTGCACGCAGTCGG
TAAAGGGCGCAACTTTGCCGCCCCGTCCACGCCCACTTCCCCTGCAACTT
CGCCGCCGCCCGACGCACCGCCGCCCAACGCGCCGCCGCCCAAGCGCCTC
TCTCCGCCACAAGGCGCGCTGCCGCTGCATGTTCCGCCTCCCATGCTGTG
CACGCTGGCCATGGCCGGCATCCAACTCTGCTACGCCGCGCAGATTAACC
TGGGCACTGCGCATCTCGTTCACCTCGGACTGCGCCATTCGCACGCCTCG
CTCGCCTGGCTGGCGGGCCCGCTGTCCGGACTGCTGTTCCAGCCGCTCAT
CGGGGCGCTTTCCGACAAGTGTGCGCACCCGCTCGGGCGGCGACGCCCCT
TTCTCATCGTCGGCTGTGTGTGCACGTCGCTGTCGCTGCTTGCCTTCGCC
AACGCGCAGCAGCTGGCCGCCATGCTTGCCGCCAAGCACGCCGCGCTGCG
CGTGGCCATCGCCGCCTTCTTCGCGCTGGATTTCTCCGTGCAGGCCATCC
AGGCGCCGCTGCGCGCGCTCGTCATCGACGTGATGCCCGCGTCCAAGCTG
TCCGCCGCAAACTCGTGCATCGGGCTGTACTGCGGCATTGGCAACCTCAT
CGGCGGCTGCCTGGTGGCGCTGCCGTGGTCCACGTGGTTCCCGCGCGTGA
CCAACATCCAAATGGTGTTTGCGCTGTCGGCGCTGTTGCTGGTCATCAGC
ACGGCGCTCACCGTGGTCAGCACGCCGGAGCAGGCGCTGATGAGGGAGGC
AAGCGCATCGCGATCGTCGTCCAGCGGGCGCCTTGCGTCCGCCACCGGCG
CGTCCTTCGCCTTCTTCTTCGCCACCGGCCGCTGCGGCACGCAGCACCTG
TCGCGCGTGCTGCGCTCGCGCCGCGCCCCCGCCCCCGCCGCCTACGTCAC
GCACGAGGAGGAGCACGCGTCGCTGCGCACCAGCGTCGTCGTGCAGCGCC
ACTACCGCGCCCTGGCCGCCGCCCCCTCCGAGGCCCTCTTCAACGCCTCC
GCCCTGCGCTACGTCACCGCCACCAAGCTCCCCTTCTACCGCCTCCTGCT
GCGCCGCCACGCCGCCCGCCGCCTCGTGTACACCGGCCACGTCCCGCTCG
CCTTCGGCCTCGCCCCCGCCCTGCTGCGCGCCCTGCCGCCCGGCCGCGTG
CGCATCGTGCGCCTGCGCCGCGACCGCATCGCCACCGCCGTGTCGCTCAT
GGCGCTCGGCCCGGAGCGCGAGGACCCGTGGGGCGAGTCGTCGCCGCCGC
CCGCCTCCAACGCCTCGCGTGTCGCCGCCGCCGCCGCCGCCGCCGCCGCC
GCGTTCGCGCTGCCGCCGCCCGCCCCTACCGCCCGCTGGTTCCCGCGCCC
CACCGACGCCTTCGTGCGCCTGCGCGTGTCGCCCGCCGCCTGGCGCGCCT
TCAACCGCTTCCAGCGCTGGCTGTGGTACGTGGACGACGTCGAGTGCCGC
TGGCAGGCGCTGCTGCACGCCTCCGCGCACCGCTTCTCGTGGATGGAGGA
GAGCCTGGACACACTGGGCGCCATGGACGGCGGCCGCGCTTGGGCCCGTC
TGGCCGACTTTATTGGCGTCGACGTCGACTGGCGCCGCGTCGCCACGCGC
CACAACTCCATTCAGCACAAGCAGCGCCGCAAGACCGACGCCTCCGAGGC
GCAGCTGCGCCAGTGGGACGAGCAGTACCGCCAGCTCGTCGGCGAGTGCG
CCCTCACCGACTCGCTGTCGTACGGCTGGCGCCACTTTGCGCTGCGCCCG
CTGCAGCCGCGCCCCGCGCGCTGA
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protein sequence of Gvermi12439.t1

>Gvermi12439.t1 ID=Gvermi12439.t1|Name=Gvermi12439.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=polypeptide|length=608bp
MGSRQHRQLISLVHAVGKGRNFAAPSTPTSPATSPPPDAPPPNAPPPKRL
SPPQGALPLHVPPPMLCTLAMAGIQLCYAAQINLGTAHLVHLGLRHSHAS
LAWLAGPLSGLLFQPLIGALSDKCAHPLGRRRPFLIVGCVCTSLSLLAFA
NAQQLAAMLAAKHAALRVAIAAFFALDFSVQAIQAPLRALVIDVMPASKL
SAANSCIGLYCGIGNLIGGCLVALPWSTWFPRVTNIQMVFALSALLLVIS
TALTVVSTPEQALMREASASRSSSSGRLASATGASFAFFFATGRCGTQHL
SRVLRSRRAPAPAAYVTHEEEHASLRTSVVVQRHYRALAAAPSEALFNAS
ALRYVTATKLPFYRLLLRRHAARRLVYTGHVPLAFGLAPALLRALPPGRV
RIVRLRRDRIATAVSLMALGPEREDPWGESSPPPASNASRVAAAAAAAAA
AFALPPPAPTARWFPRPTDAFVRLRVSPAAWRAFNRFQRWLWYVDDVECR
WQALLHASAHRFSWMEESLDTLGAMDGGRAWARLADFIGVDVDWRRVATR
HNSIQHKQRRKTDASEAQLRQWDEQYRQLVGECALTDSLSYGWRHFALRP
LQPRPAR*
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mRNA from alignment at ScGOVlb_3404:4751038..4754485-

Legend: polypeptideCDSexonstart_codonintronstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Gvermi12439.t1 ID=Gvermi12439.t1|Name=Gvermi12439.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=3448bp|location=Sequence derived from alignment at ScGOVlb_3404:4751038..4754485- (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
ATGGGCTCCCGGCAGCACCGCCAGCTCATCTCGCTGGTGCACGCAGTCGG
TAAAGGGCGCAACTTTGCCGCCCCGTCCACGCCCACTTCCCCTGCAACTT
CGCCGCCGCCCGACGCACCGCCGCCCAACGCGCCGCCGCCCAAGCGCCTC
TCTCCGCCACAAGGCGCGCTGCCGCTGCATGTTCCGCCTCCCATGCTGTG
CACGCTGGCCATGGCCGGCATCCAACTCTGCTACGCCGCGCAGATTAACC
TGGGCACTGCGCATCTCGTTCACCTCGGACTGCGCCATTCGCACGCCTCG
CTCGCCTGGCTGGCGGGCCCGCTGTCCGGACTGCTGTTCCAGCCGCTCAT
CGGGGCGCTTTCCGACAAGTGTGCGCACCCGCTCGGGCGGCGACGCCCCT
TTCTCATCGTCGGCTGTGTGTGCACGTCGCTGTCGCTGCTTGCCTTCGCC
AACGCGCAGCAGCTGGCCGCCATGCTTGCCGCCAAGCACGCCGCGCTGCG
CGTGGCCATCGCCGCCTTCTTCGCGCTGGATTTCTCCGTGCAGGCCATCC
AGGCGCCGCTGCGCGCGCTCGTCATCGACGTGATGCCCGCGTCCAAGCTG
TCCGCCGCAAACTCGTGCATCGGGCTGTACTGCGGCATTGGCAACCTCAT
CGGCGGCTGCCTGGTGGCGCTGCCGTGGTCCACGTGGTTCCCGCGCGTGA
CCAACATCCAAATGGTGTTTGCGCTGTCGGCGCTGTTGCTGGTCATCAGC
ACGGCGCTCACCGTGGTCAGCACGCCGGAGCAGGCGCTGATGAGGGAGGC
AAGCGCATCGCGATCGTCGTCCAGCGGGCGCCTTGCGTCGTCGTCCAGCG
GGCGGCTTGCGTCGTCGTCCAGCGGGCGCCTTGCGTCGTCTTCCAGCGGG
CGCCTTTCGTCGCCGTCGCTGTGGTCGCGCTCCGGCAGCGTGTGCGCGCG
GCTGTACAGGACGCTGGCGGACATCCCCAGCCCGTTTTGGAGCGTGTTCG
GCATCCAGCTGTGCACGTGGTGCGGCTTCTTCGCGCTGTTCGTGTACGTG
AACACCTGGGTGGCGCACAACGTGTTCCTGGGCGACGGGACGAGGCCGCG
GTCCGACGCGCGGCGGCAGCTGTTCGACGCGGGGGTGCGGCTGGGCGGCA
CGGCCAACGCGGCGGCGGCGGCGGTGACGATTGCGTACTCGTGGGTGCTG
CCGCGGCTGGTGCGCGCGCACGGGGTGCGCGGGGTGTACTTTGCGTCGCA
GTGCGTGGAGGCGGCGACGCTGATGGGGGCGACGGTGCTGCGCGCGCGCA
CGGCGCCGCCGGGGGCGCTGCTGCAGGCGGCGGCGGTGGCGAACGTGGGG
GCGTTCGGCGTGGTGTGGGCGACGACGATGAGCGTGCCGTGGACGCTGAT
GGTGCGGGCGCTGGAGTCGGACGCGTACTACGCGGGGCAGAAGGGGCTGT
TCACGACGGTGTTCAACGCGAGCCAGAGCCTGCCGCAGCTGGTGGTGGCG
GTGGTGGCGCCGGGGATCCTGGCGGTGCGCGACGACGCGGCGGACGTGAT
GTTCGTGGGCGGGGTGGTGGCGGCCGTGGGCGCGGCGCTGGTGCTGTGGT
GGAGGATCGAGGACGGGGCGGCGAAGGGGGCGCGCGCCGTGGACGGCCTG
GCGCCGAGCGTGAGCCTGTGCTCCATGCGCATTTCGTGAGGGCGCGCGCT
GTGAAAGACGCTGACAGCAATGCCAGTTGTGCACTGTGTGAGACGTACCA
CACGTCGATTTTGAGCGACTGGGCGGAAGAGACTTGCGCCTCAAGTATAC
TCTCGCTAGCTACTAAAGTAGCTAGCTAGAGAAGGGGTGATGGGTTGCAG
AATTCAAGCAGTGTATGGGACAAGTTTTGGTGATGACACAAACGTGAGCT
TTTTTTACGTATTGCTCAGAATTCCGGAGTGTCATCGCCATCGTAGACAC
CATCGGAGTATCCATGTTCTGCTGTGTGTTGTAAACTCGACTGCCAACCG
CGTAATTGAGGACGCTTGTGCAATTTGTTTTGTGCTCAACAAATGGTCGC
CAGCGCACGTGCCAAGTGCTGCATGGGGTTTCTGCGACGTGTCGCACGTG
TTGGGCAACCACCACGTACAACAGCATGCGCTGAGCACTGCCGGTGCGCG
GTGCGGGCGCGCGCATGCGGCGGCGCGTGCGTCGGTGGACGGCGCGCGCA
CGGGCGCTTCGCCGCGCCGCGCCGCGCCGCACGCGCGCCATGTCGCCGCC
CATGGCGCGCCCGGCGCGCCGCAGCGCCGCGCGCCGGCTGCTGCGCCGGG
CGCTGCGCCGCCTCAGCGTGCGCGCGCGCGTGCTGCTGCTGCTGGCGCTG
GGCTTCGCCGTCGGCGCGCTCGCCGCGTGCGCGCTGCTCGCCTCCGCGCC
GCCGCCGCCGCCGCCGCCGCCGCCGCGCGCCGCGCACGTCAGCGCCGCCG
ACCGCTACGCCAGCGCCACCGGCGCGTCCTTCGCCTTCTTCTTCGCCACC
GGCCGCTGCGGCACGCAGCACCTGTCGCGCGTGCTGCGCTCGCGCCGCGC
CCCCGCCCCCGCCGCCTACGTCACGCACGAGGAGGAGCACGCGTCGCTGC
GCACCAGCGTCGTCGTGCAGCGCCACTACCGCGCCCTGGCCGCCGCCCCC
TCCGAGGCCCTCTTCAACGCCTCCGCCCTGCGCTACGTCACCGCCACCAA
GCTCCCCTTCTACCGCCTCCTGCTGCGCCGCCACGCCGCCCGCCGCCTCG
TGTACACCGGCCACGTCCCGCTCGCCTTCGGCCTCGCCCCCGCCCTGCTG
CGCGCCCTGCCGCCCGGCCGCGTGCGCATCGTGCGCCTGCGCCGCGACCG
CATCGCCACCGCCGTGTCGCTCATGGCGCTCGGCCCGGAGCGCGAGGACC
CGTGGGGCGAGTCGTCGCCGCCGCCCGCCTCCAACGCCTCGCGTGTCGCC
GCCGCCGCCGCCGCCGCCGCCGCCGCGTTCGCGCTGCCGCCGCCCGCCCC
TACCGCCCGCTGGTTCCCGCGCCCCACCGACGCCTTCGTGCGCCTGCGCG
TGTCGCCCGCCGCCTGGCGCGCCTTCAACCGCTTCCAGCGCTGGCTGTGG
TACGTGGACGACGTCGAGTGCCGCTGGCAGGCGCTGCTGCACGCCTCCGC
GCACCGCTTCTCGTGGATGGAGGAGAGCCTGGACACACTGGGCGCCATGG
ACGGCGGCCGCGCTTGGGCCCGTCTGGCCGACTTTATTGGCGTCGACGTC
GACTGGCGCCGCGTCGCCACGCGCCACAACTCCATTCAGCACAAGCAGCG
CCGCAAGACCGACGCCTCCGAGGCGCAGCTGCGCCAGTGGGACGAGCAGT
ACCGCCAGCTCGTCGGCGAGTGCGCCCTCACCGACTCGCTGTCGTACGGC
TGGCGCCACTTTGCGCTGCGCCCGCTGCAGCCGCGCCCCGCGCGCTGA
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Coding sequence (CDS) from alignment at ScGOVlb_3404:4751038..4754485-

>Gvermi12439.t1 ID=Gvermi12439.t1|Name=Gvermi12439.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=CDS|length=1824bp|location=Sequence derived from alignment at ScGOVlb_3404:4751038..4754485- (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
ATGGGCTCCCGGCAGCACCGCCAGCTCATCTCGCTGGTGCACGCAGTCGG
TAAAGGGCGCAACTTTGCCGCCCCGTCCACGCCCACTTCCCCTGCAACTT
CGCCGCCGCCCGACGCACCGCCGCCCAACGCGCCGCCGCCCAAGCGCCTC
TCTCCGCCACAAGGCGCGCTGCCGCTGCATGTTCCGCCTCCCATGCTGTG
CACGCTGGCCATGGCCGGCATCCAACTCTGCTACGCCGCGCAGATTAACC
TGGGCACTGCGCATCTCGTTCACCTCGGACTGCGCCATTCGCACGCCTCG
CTCGCCTGGCTGGCGGGCCCGCTGTCCGGACTGCTGTTCCAGCCGCTCAT
CGGGGCGCTTTCCGACAAGTGTGCGCACCCGCTCGGGCGGCGACGCCCCT
TTCTCATCGTCGGCTGTGTGTGCACGTCGCTGTCGCTGCTTGCCTTCGCC
AACGCGCAGCAGCTGGCCGCCATGCTTGCCGCCAAGCACGCCGCGCTGCG
CGTGGCCATCGCCGCCTTCTTCGCGCTGGATTTCTCCGTGCAGGCCATCC
AGGCGCCGCTGCGCGCGCTCGTCATCGACGTGATGCCCGCGTCCAAGCTG
TCCGCCGCAAACTCGTGCATCGGGCTGTACTGCGGCATTGGCAACCTCAT
CGGCGGCTGCCTGGTGGCGCTGCCGTGGTCCACGTGGTTCCCGCGCGTGA
CCAACATCCAAATGGTGTTTGCGCTGTCGGCGCTGTTGCTGGTCATCAGC
ACGGCGCTCACCGTGGTCAGCACGCCGGAGCAGGCGCTGATGAGGGAGGC
AAGCGCATCGCGATCGTCGTCCAGCGGGCGCCTTGCGTCCGCCACCGGCG
CGTCCTTCGCCTTCTTCTTCGCCACCGGCCGCTGCGGCACGCAGCACCTG
TCGCGCGTGCTGCGCTCGCGCCGCGCCCCCGCCCCCGCCGCCTACGTCAC
GCACGAGGAGGAGCACGCGTCGCTGCGCACCAGCGTCGTCGTGCAGCGCC
ACTACCGCGCCCTGGCCGCCGCCCCCTCCGAGGCCCTCTTCAACGCCTCC
GCCCTGCGCTACGTCACCGCCACCAAGCTCCCCTTCTACCGCCTCCTGCT
GCGCCGCCACGCCGCCCGCCGCCTCGTGTACACCGGCCACGTCCCGCTCG
CCTTCGGCCTCGCCCCCGCCCTGCTGCGCGCCCTGCCGCCCGGCCGCGTG
CGCATCGTGCGCCTGCGCCGCGACCGCATCGCCACCGCCGTGTCGCTCAT
GGCGCTCGGCCCGGAGCGCGAGGACCCGTGGGGCGAGTCGTCGCCGCCGC
CCGCCTCCAACGCCTCGCGTGTCGCCGCCGCCGCCGCCGCCGCCGCCGCC
GCGTTCGCGCTGCCGCCGCCCGCCCCTACCGCCCGCTGGTTCCCGCGCCC
CACCGACGCCTTCGTGCGCCTGCGCGTGTCGCCCGCCGCCTGGCGCGCCT
TCAACCGCTTCCAGCGCTGGCTGTGGTACGTGGACGACGTCGAGTGCCGC
TGGCAGGCGCTGCTGCACGCCTCCGCGCACCGCTTCTCGTGGATGGAGGA
GAGCCTGGACACACTGGGCGCCATGGACGGCGGCCGCGCTTGGGCCCGTC
TGGCCGACTTTATTGGCGTCGACGTCGACTGGCGCCGCGTCGCCACGCGC
CACAACTCCATTCAGCACAAGCAGCGCCGCAAGACCGACGCCTCCGAGGC
GCAGCTGCGCCAGTGGGACGAGCAGTACCGCCAGCTCGTCGGCGAGTGCG
CCCTCACCGACTCGCTGTCGTACGGCTGGCGCCACTTTGCGCTGCGCCCG
CTGCAGCCGCGCCCCGCGCGCTGA
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