Gvermi12433.t1 (polypeptide) Gracilaria vermiculophylla HapMaleFtJ_2017 male

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NameGvermi12433.t1
Unique NameGvermi12433.t1
Typepolypeptide
OrganismGracilaria vermiculophylla HapMaleFtJ_2017 male (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
Sequence length319
Homology
BLAST of Gvermi12433.t1 vs. uniprot
Match: A0A2V3IIW3_9FLOR (RNA polymerase sigma factor SigA n=1 Tax=Gracilariopsis chorda TaxID=448386 RepID=A0A2V3IIW3_9FLOR)

HSP 1 Score: 568 bits (1465), Expect = 4.310e-203
Identity = 283/318 (88.99%), Postives = 301/318 (94.65%), Query Frame = 0
Query:    1 MSDNTVRWYLQLIGTDRLLTADEEVKYGRLVAMLMRWQRLRTQLTDSIGRQPTDDEWADFVDVDRLTFHAQLAQARKAKDRMIVCNLRLVVSIAKRYLNRGMPLSDLIQEGTLGLIRACEKFDADKGFKFSTYATWWVRQSVTRAIADQSRTVRLPVHLYDTITSIRRATKLLTNELGRPPLENEVAEYCNITVEKLRSTRVNMLSAMPLDCPLTNNDDALTLSDVIESDAESPEDKVESSLLRDDLEHVVNSLTPRERDVVRMRYGLDDGRAKTLEEIGRVFDVTKERVRQIESKALRKLRHPFRSAVLKAYTPPGS 318
            +SDNTVRWYLQLIG+DRLLTA+EEV+YGR V  LM WQR R +L D+IGR+P+D EWADFVD+DR TF  QL  ARKAKDRMIVCNLRLVVSIAKRYLNRGMPLSDLIQEGTLGLIRACEKFDA+KGFKFSTYATWWVRQ+VTRAIADQSRT+RLPVHLYDTIT+IRRATK LTNELGRPPLE E+AEYCNITVEKLRSTR+NM +AMPLDCPLTN+DDALTLSDVIESD ESPED+VESSLLRDDLEHVVNSLTPRERDVVRMRYGLDDGRAKTLEEIGRVFDVTKERVRQIESKALRKLRHPFRSAVLKAYTPPGS
Sbjct:   44 VSDNTVRWYLQLIGSDRLLTAEEEVEYGRQVRKLMHWQRNRVELADTIGREPSDSEWADFVDIDRQTFATQLVDARKAKDRMIVCNLRLVVSIAKRYLNRGMPLSDLIQEGTLGLIRACEKFDAEKGFKFSTYATWWVRQAVTRAIADQSRTIRLPVHLYDTITAIRRATKYLTNELGRPPLEREIAEYCNITVEKLRSTRINMQAAMPLDCPLTNSDDALTLSDVIESDEESPEDRVESSLLRDDLEHVVNSLTPRERDVVRMRYGLDDGRAKTLEEIGRVFDVTKERVRQIESKALRKLRHPFRSAVLKAYTPPGS 361          
BLAST of Gvermi12433.t1 vs. uniprot
Match: R7QJX2_CHOCR (RNA_pol_sigma70 domain-containing protein n=1 Tax=Chondrus crispus TaxID=2769 RepID=R7QJX2_CHOCR)

HSP 1 Score: 520 bits (1338), Expect = 1.560e-181
Identity = 255/316 (80.70%), Postives = 288/316 (91.14%), Query Frame = 0
Query:    1 MSDNTVRWYLQLIGTDRLLTADEEVKYGRLVAMLMRWQRLRTQLTDSIGRQPTDDEWADFVDVDRLTFHAQLAQARKAKDRMIVCNLRLVVSIAKRYLNRGMPLSDLIQEGTLGLIRACEKFDADKGFKFSTYATWWVRQSVTRAIADQSRTVRLPVHLYDTITSIRRATKLLTNELGRPPLENEVAEYCNITVEKLRSTRVNMLSAMPLDCPLTNNDDALTLSDVIESDAESPEDKVESSLLRDDLEHVVNSLTPRERDVVRMRYGLDDGRAKTLEEIGRVFDVTKERVRQIESKALRKLRHPFRSAVLKAYTPP 316
            ++DNTVRWYLQLIG DRLL A+EEV  GR +  LM+WQR+  +L DSIGRQP+ +EWA ++ +D   F  +L  A++AKDRMIVCNLRLVVSIAKRY+NRGMPLSDLIQEGTLGLIRACEKFDA++GFKFSTYATWWVRQ+VTR+IADQSRT+RLPVHLYDTI +IRRATK LTNELGRPPLE E+A+YC ITVEKLR+TRVNM SA+PLDCPL+++DDALTLSDVIESD ESPED+VESSLLRDDLEHVVNSLTPRERDVVRMRYGLDDGRAKTLEEIGR FDVTKERVRQIESKALRKLRHP+RSA+L+ YTPP
Sbjct:  189 LADNTVRWYLQLIGGDRLLRAEEEVTLGRQIRDLMQWQRMFVELADSIGRQPSTNEWAQYMGMDETDFATRLLHAKRAKDRMIVCNLRLVVSIAKRYMNRGMPLSDLIQEGTLGLIRACEKFDAERGFKFSTYATWWVRQAVTRSIADQSRTIRLPVHLYDTILAIRRATKFLTNELGRPPLEQEIADYCKITVEKLRATRVNMQSALPLDCPLSSSDDALTLSDVIESDEESPEDRVESSLLRDDLEHVVNSLTPRERDVVRMRYGLDDGRAKTLEEIGRAFDVTKERVRQIESKALRKLRHPYRSAILREYTPP 504          
BLAST of Gvermi12433.t1 vs. uniprot
Match: A0A7S2ZBG5_9RHOD (Hypothetical protein n=3 Tax=Rhodosorus marinus TaxID=101924 RepID=A0A7S2ZBG5_9RHOD)

HSP 1 Score: 415 bits (1067), Expect = 5.550e-141
Identity = 202/313 (64.54%), Postives = 256/313 (81.79%), Query Frame = 0
Query:    2 SDNTVRWYLQLIGTDRLLTADEEVKYGRLVAMLMRWQRLRTQLTDSIGRQPTDDEWADFVDVDRLTFHAQLAQARKAKDRMIVCNLRLVVSIAKRYLNRGMPLSDLIQEGTLGLIRACEKFDADKGFKFSTYATWWVRQSVTRAIADQSRTVRLPVHLYDTITSIRRATKLLTNELGRPPLENEVAEYCNITVEKLRSTRVNMLSAMPLDCPLTNNDDA-LTLSDVIESDAESPEDKVESSLLRDDLEHVVNSLTPRERDVVRMRYGLDDGRAKTLEEIGRVFDVTKERVRQIESKALRKLRHPFRSAVLKAY 313
            SDNTVRWYL+L+G  RLL A+EEV   R +A L++W+R R Q+ + +GR PT +EWA+ +++D   F +QL Q RKAK++MI  NLRLVVSIAKRY NRG+PLSD+IQEGTLGL+RA EKFD  +G+KFSTYATWWV+Q+V RAIAD SR +RLPVHLYDTI ++RRAT+ LT  LGR P E E+A Y  +++ KLRSTR++M+  +PL+ PL   DDA + L DV++S   SPED+VE +LLR+DLEHV+NSL+PRERDVVRMRYGLDDGR KTL+EIGR+F V+KERVRQIE+KA+RKLRHP+RSAVL+ +
Sbjct:  152 SDNTVRWYLELVGKGRLLRAEEEVDLSRRIAQLLQWERHRQQMYEEMGRDPTVEEWAEALEMDIKDFQSQLFQCRKAKEKMITSNLRLVVSIAKRYANRGLPLSDMIQEGTLGLVRAAEKFDGSRGYKFSTYATWWVKQAVARAIADHSRNIRLPVHLYDTIAAVRRATRCLTESLGRSPSEEEIAAYLGLSISKLRSTRIHMMPTIPLESPLKEVDDAGMCLGDVLQSTEVSPEDRVERALLREDLEHVINSLSPRERDVVRMRYGLDDGRMKTLDEIGRMFCVSKERVRQIETKAIRKLRHPYRSAVLRDF 464          
BLAST of Gvermi12433.t1 vs. uniprot
Match: A0A7S1TCA4_9RHOD (Hypothetical protein n=1 Tax=Compsopogon caeruleus TaxID=31354 RepID=A0A7S1TCA4_9RHOD)

HSP 1 Score: 394 bits (1011), Expect = 1.010e-131
Identity = 196/313 (62.62%), Postives = 249/313 (79.55%), Query Frame = 0
Query:    1 MSDNTVRWYLQLIGTDRLLTADEEVKYGRLVAMLMRWQRLRTQLTDSIGRQPTDDEWADFVDVDRLTFHAQLAQARKAKDRMIVCNLRLVVSIAKRYLNRGMPLSDLIQEGTLGLIRACEKFDADKGFKFSTYATWWVRQSVTRAIADQSRTVRLPVHLYDTITSIRRATKLLTNELGRPPLENEVAEYCNITVEKLRSTRVNMLSAMPLDCPLTNNDDALTLSDVIESDAESPEDKVESSLLRDDLEHVVNSLTPRERDVVRMRYGLDDGRAKTLEEIGRVFDVTKERVRQIESKALRKLRHPFRSAVLKAY 313
            +  +T+ W++ LI  DRLL  DEEV+  R +A+L+ W+R RT+L DS+ R+PT  EWA  V  +   F+  L + R AK++M+V NLRLVVSIAK+Y+NRG+PLSD+IQEGT+GLIRA EKFD  +GFKFSTYATWWV+Q+V RAIADQSRT+RLPVHLYDT+ SIR+ T+ LT ELGR P E E+A    I + KLR+TRV M   +PLD P+  N+D+LTL ++IE + E PE++VE SLLR+DLEHVVNSL+PRERDVVRMR+GLDDGR KTL+EIGRVF V+KERVRQIE+KA+RKLR P RS+VL+ +
Sbjct:  208 VGQDTLPWFMGLISGDRLLRTDEEVELSRQIALLLNWERKRTELADSLSREPTLSEWALQVGCNPEEFNFHLCEYRSAKEKMVVSNLRLVVSIAKKYMNRGLPLSDMIQEGTMGLIRAAEKFDGTRGFKFSTYATWWVKQAVARAIADQSRTIRLPVHLYDTLWSIRKVTRALTEELGRNPTEKEIATRVGIPIPKLRATRVYMQPCIPLDNPVQVNEDSLTLGEIIECEDECPEERVEQSLLREDLEHVVNSLSPRERDVVRMRFGLDDGRVKTLDEIGRVFCVSKERVRQIETKAIRKLRKPCRSSVLQDF 520          
BLAST of Gvermi12433.t1 vs. uniprot
Match: J7G2H9_9CRYP (RNA-polymerase sigma factor n=1 Tax=Chroomonas mesostigmatica CCMP1168 TaxID=1195612 RepID=J7G2H9_9CRYP)

HSP 1 Score: 390 bits (1001), Expect = 9.830e-131
Identity = 195/313 (62.30%), Postives = 248/313 (79.23%), Query Frame = 0
Query:    2 SDNTVRWYLQLIGTDRLLTADEEVKYGRLVAMLMRWQRLRTQLTDSIGRQPTDDEWADFVDV-DRLTFHAQLAQARKAKDRMIVCNLRLVVSIAKRYLNRGMPLSDLIQEGTLGLIRACEKFDADKGFKFSTYATWWVRQSVTRAIADQSRTVRLPVHLYDTITSIRRATKLLTNELGRPPLENEVAEYCNITVEKLRSTRVNMLSAMPLDCPLTNNDDALTLSDVIESDAESPEDKVESSLLRDDLEHVVNSLTPRERDVVRMRYGLDDGRAKTLEEIGRVFDVTKERVRQIESKALRKLRHPFRSAVLKAY 313
            +D++VRWYLQLIG  RLL  +EE++  R ++ L+ W+ ++  L + + R+PT  EW     V D   F A L  AR+AK+RM+  NLRLVVSIAKRY+NRGM L DLIQEG+LGLIRA EKFD++KGFKFSTYATWWV+Q+VTRAIAD SRT+RLPVHLYDTI++IR+ T+ L  E+GR P E E+AE  +++VEKLRS   +    + L+ PL N+DDA  LSD IE+D ESPE+ VE S+LRDDLE+V+NSL+PRERDVVRMRYGLDDGR KTLEEIG++F VT+ERVRQIE+KA+RKLR P+RS++L+ Y
Sbjct:  131 ADDSVRWYLQLIGRVRLLRPEEEIQLAREISQLLHWEHVKISLREKLQREPTSSEWTAACKVSDVKKFRAILHNARRAKERMVAANLRLVVSIAKRYVNRGMSLQDLIQEGSLGLIRAAEKFDSEKGFKFSTYATWWVKQAVTRAIADHSRTIRLPVHLYDTISAIRKTTRTLNIEIGRSPTEEEIAEKMDMSVEKLRSVLQSAQPTLSLERPLKNDDDASQLSDFIEADQESPEEHVEKSMLRDDLENVINSLSPRERDVVRMRYGLDDGRIKTLEEIGQIFSVTRERVRQIEAKAIRKLRQPYRSSILRDY 443          
BLAST of Gvermi12433.t1 vs. uniprot
Match: A9BK56_HEMAN (RpoD n=1 Tax=Hemiselmis andersenii TaxID=464988 RepID=A9BK56_HEMAN)

HSP 1 Score: 390 bits (1001), Expect = 9.830e-131
Identity = 195/313 (62.30%), Postives = 248/313 (79.23%), Query Frame = 0
Query:    2 SDNTVRWYLQLIGTDRLLTADEEVKYGRLVAMLMRWQRLRTQLTDSIGRQPTDDEWADFVDV-DRLTFHAQLAQARKAKDRMIVCNLRLVVSIAKRYLNRGMPLSDLIQEGTLGLIRACEKFDADKGFKFSTYATWWVRQSVTRAIADQSRTVRLPVHLYDTITSIRRATKLLTNELGRPPLENEVAEYCNITVEKLRSTRVNMLSAMPLDCPLTNNDDALTLSDVIESDAESPEDKVESSLLRDDLEHVVNSLTPRERDVVRMRYGLDDGRAKTLEEIGRVFDVTKERVRQIESKALRKLRHPFRSAVLKAY 313
            +D++VRWYLQLIG  RLL  +EE++  R ++ L+ W+ ++  L + + R+PT  EW     V D   F A L  AR+AK+RM+  NLRLVVSIAKRY+NRGM L DLIQEG+LGLIRA EKFD++KGFKFSTYATWWV+Q+VTRAIAD SRT+RLPVHLYDTI++IR+ T+ L  E+GR P E E+AE  +++VEKLRS   +    + L+ PL N+DDA  LSD IE+D ESPE+ VE S+LRDDLE+V+NSL+PRERDVVRMRYGLDDGR KTLEEIG++F VT+ERVRQIE+KA+RKLR P+RS++L+ Y
Sbjct:  128 ADDSVRWYLQLIGRVRLLRPEEEIQLAREISQLLHWEHVKISLREKLQREPTSSEWTAACKVSDVKKFRAILHNARRAKERMVAANLRLVVSIAKRYVNRGMSLQDLIQEGSLGLIRAAEKFDSEKGFKFSTYATWWVKQAVTRAIADHSRTIRLPVHLYDTISAIRKTTRTLNIEIGRSPTEEEIAEKMDMSVEKLRSVLQSAQPTLSLERPLKNDDDASQLSDFIEADQESPEEHVEKSMLRDDLENVINSLSPRERDVVRMRYGLDDGRIKTLEEIGQIFSVTRERVRQIEAKAIRKLRQPYRSSILRDY 440          
BLAST of Gvermi12433.t1 vs. uniprot
Match: Q98RZ3_GUITH (RNA-polymerase sigma factor n=2 Tax=Guillardia theta TaxID=55529 RepID=Q98RZ3_GUITH)

HSP 1 Score: 388 bits (996), Expect = 2.510e-130
Identity = 194/318 (61.01%), Postives = 249/318 (78.30%), Query Frame = 0
Query:    2 SDNTVRWYLQLIGTDRLLTADEEVKYGRLVAMLMRWQRLRTQLTDSIGRQPTDDEWADFVDV-DRLTFHAQLAQARKAKDRMIVCNLRLVVSIAKRYLNRGMPLSDLIQEGTLGLIRACEKFDADKGFKFSTYATWWVRQSVTRAIADQSRTVRLPVHLYDTITSIRRATKLLTNELGRPPLENEVAEYCNITVEKLRSTRVNMLSAMPLDCPLTNNDDALTLSDVIESDAESPEDKVESSLLRDDLEHVVNSLTPRERDVVRMRYGLDDGRAKTLEEIGRVFDVTKERVRQIESKALRKLRHPFRSAVLKAYTPPGS 318
            +D++VRWYLQLIG  RLL  DEE++  R ++ L+ W+ ++  L D + R+PT+ EW     V D   F + L  AR+AK+RM+  NLRLVVSIAKRY+NRGM L DLIQEG+LGLIRA EKFD++KGFKFSTYATWWV+Q+VTRAIAD SRT+RLPVHLYDTI++IR+ T+ L  E+GR P E E+A+  +++VEKLR+   +    + L+ PL N+DD   LSD IE+D ESPE+ VE S+LRDDLE+V+NSL+PRERDVVRMRYGLDDGR KTLEEIG++F VT+ERVRQIE+KA+RKLR P+RS++L+ Y    S
Sbjct:  111 ADDSVRWYLQLIGRVRLLRPDEEIQLAREISQLLHWEHVKISLRDKLRREPTNSEWTAACKVSDVRKFRSILHNARRAKERMVAANLRLVVSIAKRYVNRGMSLQDLIQEGSLGLIRAAEKFDSEKGFKFSTYATWWVKQAVTRAIADHSRTIRLPVHLYDTISAIRKTTRNLNIEIGRSPTEEEIAKRMDMSVEKLRNVLQSAQPTLSLERPLKNDDDTSQLSDFIEADQESPEEHVEKSMLRDDLENVINSLSPRERDVVRMRYGLDDGRIKTLEEIGQIFSVTRERVRQIEAKAIRKLRQPYRSSILRDYVASNS 428          
BLAST of Gvermi12433.t1 vs. uniprot
Match: Q8S9D0_GUITH (RNA polymerase sigma factor n=1 Tax=Guillardia theta TaxID=55529 RepID=Q8S9D0_GUITH)

HSP 1 Score: 389 bits (998), Expect = 3.280e-130
Identity = 194/313 (61.98%), Postives = 248/313 (79.23%), Query Frame = 0
Query:    2 SDNTVRWYLQLIGTDRLLTADEEVKYGRLVAMLMRWQRLRTQLTDSIGRQPTDDEWADFVDV-DRLTFHAQLAQARKAKDRMIVCNLRLVVSIAKRYLNRGMPLSDLIQEGTLGLIRACEKFDADKGFKFSTYATWWVRQSVTRAIADQSRTVRLPVHLYDTITSIRRATKLLTNELGRPPLENEVAEYCNITVEKLRSTRVNMLSAMPLDCPLTNNDDALTLSDVIESDAESPEDKVESSLLRDDLEHVVNSLTPRERDVVRMRYGLDDGRAKTLEEIGRVFDVTKERVRQIESKALRKLRHPFRSAVLKAY 313
            +D++VRWYLQLIG  RLL  +EE++  R ++ L+ W+ ++  L + + R+PT  EW     V D   F + L  AR+AK+RM+  NLRLVVSIAKRY+NRGM L DLIQEG+LGLIRA EKFD++KGFKFSTYATWWV+Q+VTRAIAD SRT+RLPVHLYDTI++IR+ T+ L  E+GR P E E+AE  +++VEKLRS   +    + L+ PL N+DDA  LSD IE+D ESPE+ VE S+LRDDLE+V+NSL+PRERDVVRMRYGLDDGR KTLEEIG++F VT+ERVRQIE+KA+RKLR P+RS++L+ Y
Sbjct:  128 ADDSVRWYLQLIGRVRLLRPEEEIQLAREISQLLHWEHVKISLREKLQREPTSSEWTAACKVSDVKKFRSILHNARRAKERMVAANLRLVVSIAKRYVNRGMSLQDLIQEGSLGLIRAAEKFDSEKGFKFSTYATWWVKQAVTRAIADHSRTIRLPVHLYDTISAIRKTTRTLNIEIGRSPTEEEIAEKMDMSVEKLRSVLQSAQPTLSLERPLKNDDDASQLSDFIEADQESPEEHVEKSMLRDDLENVINSLSPRERDVVRMRYGLDDGRIKTLEEIGQIFSVTRERVRQIEAKAIRKLRQPYRSSILRDY 440          
BLAST of Gvermi12433.t1 vs. uniprot
Match: A0A5J4YY77_PORPP (RNA polymerase sigma factor SigA n=1 Tax=Porphyridium purpureum TaxID=35688 RepID=A0A5J4YY77_PORPP)

HSP 1 Score: 389 bits (999), Expect = 2.050e-129
Identity = 189/311 (60.77%), Postives = 247/311 (79.42%), Query Frame = 0
Query:    3 DNTVRWYLQLIGTDRLLTADEEVKYGRLVAMLMRWQRLRTQLTDSIGRQPTDDEWADFVDVDRLTFHAQLAQARKAKDRMIVCNLRLVVSIAKRYLNRGMPLSDLIQEGTLGLIRACEKFDADKGFKFSTYATWWVRQSVTRAIADQSRTVRLPVHLYDTITSIRRATKLLTNELGRPPLENEVAEYCNITVEKLRSTRVNMLSAMPLDCPLTNNDDALTLSDVIESDAESPEDKVESSLLRDDLEHVVNSLTPRERDVVRMRYGLDDGRAKTLEEIGRVFDVTKERVRQIESKALRKLRHPFRSAVLKAY 313
            D++V WY +LIG   LL++ EEV+  R +A+L+ W+R R  L +++ R+P+D EWA  V  D  +F   L   R A+DRM++ NLRLVVSIAKRY +RG+PL D+IQEGTLGLIRA EKFD ++GFKFSTYATWWV+Q+VTR+IAD SRT+RLPVHLY+T+ +I+RAT+ L  + GR P + E+++Y  +T++KLRS R++M   +PLD PL  +D   TL ++IE + + PED+VE SLLR+DLEHVVNSL+PRERDVVRMRYGLDDGR KTLEEIGRVF VTKERVRQIE+KA+RKLRHP+R+ VL+ +
Sbjct:  247 DDSVGWYSRLIGDQNLLSSQEEVELSRQIAILLAWERERDALAETLNREPSDKEWAAHVGQDEASFERDLFLYRAARDRMVLSNLRLVVSIAKRYTSRGLPLGDMIQEGTLGLIRASEKFDGERGFKFSTYATWWVKQAVTRSIADNSRTIRLPVHLYETVNAIKRATRTLNEQHGRAPTDAELSKYMGMTMKKLRSLRIHMQPVVPLDKPLKVDDGTTTLGEIIECEDDPPEDRVEQSLLREDLEHVVNSLSPRERDVVRMRYGLDDGRVKTLEEIGRVFAVTKERVRQIENKAIRKLRHPYRAGVLRDF 557          
BLAST of Gvermi12433.t1 vs. uniprot
Match: A0A1Z3HQF2_9CYAN (RNA polymerase sigma factor SigA n=2 Tax=Pseudanabaenales TaxID=2881377 RepID=A0A1Z3HQF2_9CYAN)

HSP 1 Score: 371 bits (953), Expect = 4.530e-125
Identity = 184/312 (58.97%), Postives = 245/312 (78.53%), Query Frame = 0
Query:    2 SDNTVRWYLQLIGTDRLLTADEEVKYGRLVAMLMRWQRLRTQLTDSIGRQPTDDEWADFVDVDRLTFHAQLAQARKAKDRMIVCNLRLVVSIAKRYLNRGMPLSDLIQEGTLGLIRACEKFDADKGFKFSTYATWWVRQSVTRAIADQSRTVRLPVHLYDTITSIRRATKLLTNELGRPPLENEVAEYCNITVEKLRSTRVNMLSAMPLDCPLTNNDDALTLSDVIESDAESPEDKVESSLLRDDLEHVVNSLTPRERDVVRMRYGLDDGRAKTLEEIGRVFDVTKERVRQIESKALRKLRHPFRSAVLKAY 313
            +++++R YLQ IG  RLL A+EE++  R +A L+  +R+R  L DS+ R+P DDEWA+ VD+    F  +L Q R+AKD+M+  NLRLVVSIAK+Y+NRG+   DLIQEG+LGLIRA EKFD +KG+KFSTYATWW+RQ++TRAIADQSRT+RLPVHLY+TI+ I++ TKLL+ ELGR P E E+A    +T+EKLR    +    + L+ P+   +D+  L D IESD E+PED+V  SLLR+DLE V+ +L+PRERDV+R+RYGLDDGR KTLEEIG++F+VT+ER+RQIE+KALRKLRHP R+++LK Y
Sbjct:   60 TEDSIRLYLQEIGRIRLLRAEEEIELARKIADLLELERIRDDLVDSLEREPRDDEWAEAVDMALPAFRRRLHQGRRAKDKMVQSNLRLVVSIAKKYMNRGLSFQDLIQEGSLGLIRAAEKFDHEKGYKFSTYATWWIRQAITRAIADQSRTIRLPVHLYETISRIKKTTKLLSQELGRKPTEEEIATRMEMTIEKLRFIAKSAQLPISLETPIGKEEDS-RLGDFIESDGETPEDEVSKSLLREDLESVLGTLSPRERDVLRLRYGLDDGRMKTLEEIGQIFNVTRERIRQIEAKALRKLRHPNRNSILKEY 370          
The following BLAST results are available for this feature:
BLAST of Gvermi12433.t1 vs. uniprot
Analysis Date: 2022-06-02 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A2V3IIW3_9FLOR4.310e-20388.99RNA polymerase sigma factor SigA n=1 Tax=Gracilari... [more]
R7QJX2_CHOCR1.560e-18180.70RNA_pol_sigma70 domain-containing protein n=1 Tax=... [more]
A0A7S2ZBG5_9RHOD5.550e-14164.54Hypothetical protein n=3 Tax=Rhodosorus marinus Ta... [more]
A0A7S1TCA4_9RHOD1.010e-13162.62Hypothetical protein n=1 Tax=Compsopogon caeruleus... [more]
J7G2H9_9CRYP9.830e-13162.30RNA-polymerase sigma factor n=1 Tax=Chroomonas mes... [more]
A9BK56_HEMAN9.830e-13162.30RpoD n=1 Tax=Hemiselmis andersenii TaxID=464988 Re... [more]
Q98RZ3_GUITH2.510e-13061.01RNA-polymerase sigma factor n=2 Tax=Guillardia the... [more]
Q8S9D0_GUITH3.280e-13061.98RNA polymerase sigma factor n=1 Tax=Guillardia the... [more]
A0A5J4YY77_PORPP2.050e-12960.77RNA polymerase sigma factor SigA n=1 Tax=Porphyrid... [more]
A0A1Z3HQF2_9CYAN4.530e-12558.97RNA polymerase sigma factor SigA n=2 Tax=Pseudanab... [more]

Pages

back to top
InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-06-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR000943RNA polymerase sigma-70PRINTSPR00046SIGMA70FCTcoord: 106..119
score: 67.47
coord: 254..266
score: 50.87
coord: 290..301
score: 68.28
coord: 130..138
score: 78.71
coord: 275..290
score: 56.9
IPR000943RNA polymerase sigma-70PROSITEPS00716SIGMA70_2coord: 275..301
IPR014284RNA polymerase sigma-70 like domainTIGRFAMTIGR02937TIGR02937coord: 78..303
e-value: 3.4E-37
score: 125.6
IPR009042RNA polymerase sigma-70 region 1.2PFAMPF00140Sigma70_r1_2coord: 5..32
e-value: 9.9E-6
score: 25.5
IPR007630RNA polymerase sigma-70 region 4PFAMPF04545Sigma70_r4coord: 252..303
e-value: 7.4E-20
score: 70.2
IPR036388Winged helix-like DNA-binding domain superfamilyGENE3D1.10.10.10coord: 232..315
e-value: 1.9E-31
score: 109.6
IPR036388Winged helix-like DNA-binding domain superfamilyGENE3D1.10.10.10coord: 155..231
e-value: 1.3E-12
score: 50.0
IPR007627RNA polymerase sigma-70 region 2PFAMPF04542Sigma70_r2coord: 83..151
e-value: 8.0E-21
score: 73.6
NoneNo IPR availableGENE3D1.10.601.10RNA Polymerase Primary Sigma Factorcoord: 53..154
e-value: 1.9E-47
score: 164.4
NoneNo IPR availablePANTHERPTHR30603RNA POLYMERASE SIGMA FACTOR RPOcoord: 3..314
NoneNo IPR availablePANTHERPTHR30603:SF45RNA POLYMERASE SIGMA FACTOR SIGF, CHLOROPLASTICcoord: 3..314
NoneNo IPR availableCDDcd06171Sigma70_r4coord: 244..302
e-value: 3.35606E-14
score: 64.0478
IPR007624RNA polymerase sigma-70 region 3PFAMPF04539Sigma70_r3coord: 162..237
e-value: 1.6E-10
score: 40.9
IPR013324RNA polymerase sigma factor, region 3/4-likeSUPERFAMILY88659Sigma3 and sigma4 domains of RNA polymerase sigma factorscoord: 214..313
IPR013324RNA polymerase sigma factor, region 3/4-likeSUPERFAMILY88659Sigma3 and sigma4 domains of RNA polymerase sigma factorscoord: 155..229
IPR013325RNA polymerase sigma factor, region 2SUPERFAMILY88946Sigma2 domain of RNA polymerase sigma factorscoord: 2..152

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
ScGOVlb_3404contigScGOVlb_3404:4733507..4734463 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-06-01
Diamond blastp: OGS1.0 vs UniRef902022-06-02
Gracilaria vermiculophylla HapMaleFtJ_2017 male OGS1.02022-05-09
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
Gvermi12433.t1Gvermi12433.t1Gracilaria vermiculophylla HapMaleFtJ_2017 malemRNAScGOVlb_3404 4733507..4734463 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>Gvermi12433.t1 ID=Gvermi12433.t1|Name=Gvermi12433.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=polypeptide|length=319bp
MSDNTVRWYLQLIGTDRLLTADEEVKYGRLVAMLMRWQRLRTQLTDSIGR
QPTDDEWADFVDVDRLTFHAQLAQARKAKDRMIVCNLRLVVSIAKRYLNR
GMPLSDLIQEGTLGLIRACEKFDADKGFKFSTYATWWVRQSVTRAIADQS
RTVRLPVHLYDTITSIRRATKLLTNELGRPPLENEVAEYCNITVEKLRST
RVNMLSAMPLDCPLTNNDDALTLSDVIESDAESPEDKVESSLLRDDLEHV
VNSLTPRERDVVRMRYGLDDGRAKTLEEIGRVFDVTKERVRQIESKALRK
LRHPFRSAVLKAYTPPGS*
back to top
Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR000943RNA_pol_sigma70
IPR014284RNA_pol_sigma-70_dom
IPR009042RNA_pol_sigma70_r1_2
IPR007630RNA_pol_sigma70_r4
IPR036388WH-like_DNA-bd_sf
IPR007627RNA_pol_sigma70_r2
IPR007624RNA_pol_sigma70_r3
IPR013324RNA_pol_sigma_r3/r4-like
IPR013325RNA_pol_sigma_r2