Gvermi12350.t1 (mRNA) Gracilaria vermiculophylla HapMaleFtJ_2017 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGvermi12350.t1
Unique NameGvermi12350.t1
TypemRNA
OrganismGracilaria vermiculophylla HapMaleFtJ_2017 male (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
Sequence length796
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
ScGOVlb_3404contigScGOVlb_3404:4303363..4305750 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria vermiculophylla HapMaleFtJ_2017 male OGS1.02022-05-09
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Gvermi12350Gvermi12350Gracilaria vermiculophylla HapMaleFtJ_2017 malegeneScGOVlb_3404 4303363..4305750 -


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi12350.t1.stop1Gvermi12350.t1.stop1Gracilaria vermiculophylla HapMaleFtJ_2017 malestop_codonScGOVlb_3404 4303363..4303365 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi12350.t1.CDS1Gvermi12350.t1.CDS1Gracilaria vermiculophylla HapMaleFtJ_2017 maleCDSScGOVlb_3404 4303363..4305750 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi12350.t1.exon1Gvermi12350.t1.exon1Gracilaria vermiculophylla HapMaleFtJ_2017 maleexonScGOVlb_3404 4303363..4305750 -


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi12350.t1.start1Gvermi12350.t1.start1Gracilaria vermiculophylla HapMaleFtJ_2017 malestart_codonScGOVlb_3404 4305748..4305750 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi12350.t1Gvermi12350.t1Gracilaria vermiculophylla HapMaleFtJ_2017 malepolypeptideScGOVlb_3404 4303363..4305750 -


Sequences
The following sequences are available for this feature:

mRNA sequence

>Gvermi12350.t1 ID=Gvermi12350.t1|Name=Gvermi12350.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=796bp
MLLPLTPPLTPPMSAAPSPPSTPPHSNLLNSYAAHMKSLSAALDTRAHAL
RTAEARLESRGSALRAHERALASLERRMRSEMTAFLRDVAARQRQLSRWE
QRAEKGRKLVASITNNKEQLKTTKTALEHKNAQLQLVEKEYAALAQSRDT
VTSQIEAAKTELSRLATEARRISDEKIRLETLANRLEMLEGAVRKRERDV
DATEAAVTLKSERLASLENFERVVAPLQTFVDEFCALEQREAVSIRDDVA
EGVQLALLALREMHSKLRSLKDTRAQLDSLQATLEQRENSLRERELSLRQ
REHNLDVTEAKVSNEQDKLSMQSNQLKDGMRSLDDTRADIDRREEAAHKK
ERELMQRESKLHNRETAITQSEKTLARRERSIRRAHAAVAEREKLIDQRE
REVETERAKFNNMKRSIDLREVMLETKELELVAREASVPNNSRPFLSDNS
AKIKQRSQGLQHDTQSGIQELQDPIGEEVTKEHSVSEEGGTDDKADVPLS
RKQLPPRTVRRQLEFETIKRSVPNVSQNDIRREDRDDNDNESEVAAEQLL
PELVSARALWKERILRLEVVVRNMRENTWGLKAHVQPVLHAVAERLGAVR
KEIESAPLQHSAGSSKRDYAAEQGLQVRWGSIMREQLDAVREVQTGMLIG
LNKQEDIAQSGVASDESSSAGEVNSGIRSAGSLEQESSVEATLDVTTTVE
LKDNLRGQKKEVRAVPSLFQGIGSRRQARGSQNGSMALQARDEGHTRRTR
RRIAVEPRSLGVPRSRHAEDGATDLFQELASLRNELDTITGILNI*
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spliced messenger RNA

>Gvermi12350.t1 ID=Gvermi12350.t1|Name=Gvermi12350.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=2388bp|location=Sequence derived from alignment at ScGOVlb_3404:4303363..4305750- (Gracilaria vermiculophylla HapMaleFtJ_2017 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGCTCCTGCCTCTCACGCCGCCGCTCACGCCCCCCATGTCCGCAGCACC
CTCCCCGCCATCCACTCCCCCCCACAGCAATCTGCTTAACTCGTACGCCG
CCCATATGAAGAGTCTTTCCGCCGCGCTCGATACGCGCGCGCACGCATTG
CGTACCGCCGAAGCGCGGCTTGAGAGCCGCGGCAGCGCGCTTAGAGCTCA
TGAAAGGGCTCTGGCCTCTCTCGAGCGCCGGATGAGGTCAGAGATGACTG
CCTTTCTGCGCGATGTTGCTGCGAGACAGAGGCAACTCTCGCGGTGGGAA
CAGCGTGCCGAAAAGGGCAGAAAGCTTGTTGCGTCTATCACCAACAACAA
GGAGCAGCTGAAAACAACTAAAACAGCGCTTGAGCATAAGAACGCTCAGC
TTCAGCTTGTGGAGAAGGAGTATGCCGCCTTGGCTCAGTCTCGCGATACA
GTTACCTCTCAGATTGAGGCTGCAAAGACAGAGCTCAGTCGACTAGCCAC
GGAAGCCAGACGTATTTCGGATGAGAAGATTCGTCTGGAAACGCTCGCCA
ACCGCCTTGAAATGCTTGAGGGTGCTGTCAGAAAGCGAGAGCGCGACGTG
GACGCCACTGAGGCTGCTGTCACCCTTAAATCGGAACGCCTGGCATCTCT
GGAGAACTTTGAGCGTGTTGTAGCACCGCTGCAGACATTTGTTGATGAGT
TTTGTGCCTTGGAACAAAGGGAAGCAGTTTCGATACGTGACGATGTCGCA
GAGGGCGTACAACTCGCTCTTTTGGCCTTACGTGAAATGCATTCCAAATT
GCGCTCCTTGAAAGACACGCGCGCCCAGTTGGATTCATTGCAAGCTACTC
TGGAGCAAAGGGAAAATAGTTTGAGAGAAAGAGAACTTTCCTTAAGACAG
AGAGAACACAATTTGGATGTTACCGAAGCAAAAGTATCCAATGAACAAGA
CAAATTATCTATGCAGAGCAATCAATTGAAGGATGGAATGCGTTCTCTTG
ATGATACCCGTGCAGATATCGACCGACGAGAAGAGGCTGCTCACAAAAAA
GAACGTGAACTGATGCAGAGAGAGTCCAAATTACACAATCGTGAAACGGC
TATCACCCAGTCCGAAAAAACTCTGGCTAGAAGAGAGCGTTCAATCCGAC
GGGCTCATGCTGCTGTCGCAGAACGAGAAAAGCTCATCGATCAGCGTGAA
CGCGAAGTCGAAACCGAACGCGCCAAGTTCAACAATATGAAACGTTCTAT
TGATCTCCGTGAGGTGATGTTGGAGACTAAAGAACTTGAGCTTGTGGCTA
GAGAGGCGTCGGTACCAAACAATTCACGTCCGTTTCTCTCTGACAACTCT
GCGAAGATCAAGCAACGGTCTCAGGGTCTTCAACATGATACGCAGTCTGG
TATACAAGAACTTCAAGACCCGATCGGTGAGGAGGTCACAAAAGAGCACT
CTGTAAGTGAAGAAGGAGGCACAGATGACAAAGCGGACGTGCCACTATCT
CGAAAGCAACTGCCACCGCGCACAGTACGACGCCAATTAGAGTTTGAAAC
AATCAAAAGAAGTGTTCCTAATGTGAGCCAAAACGATATACGACGAGAAG
ATCGTGATGATAATGACAATGAGAGTGAAGTGGCGGCCGAACAGCTGCTG
CCAGAACTTGTAAGTGCTAGGGCTTTGTGGAAGGAGCGCATCTTGAGACT
AGAGGTGGTGGTGCGTAACATGCGCGAGAATACATGGGGATTGAAGGCCC
ATGTGCAACCTGTTCTTCACGCGGTAGCAGAAAGACTCGGGGCTGTGAGG
AAAGAAATTGAGTCGGCACCATTGCAACATTCAGCTGGAAGTTCAAAGCG
CGACTACGCAGCGGAGCAAGGTTTACAGGTGCGCTGGGGCTCTATTATGC
GAGAGCAGTTGGACGCCGTTAGAGAGGTTCAAACTGGTATGCTGATTGGA
CTTAACAAGCAAGAGGATATTGCGCAATCAGGCGTCGCGAGCGACGAATC
AAGTAGTGCAGGCGAGGTAAATAGCGGCATAAGGAGCGCTGGTAGCTTGG
AACAGGAAAGCTCGGTGGAGGCCACTCTGGATGTTACCACAACTGTGGAA
CTGAAGGATAACCTGCGGGGTCAAAAGAAAGAAGTTCGGGCAGTTCCATC
CTTGTTCCAGGGCATCGGTAGTCGTCGCCAAGCTCGCGGAAGCCAAAATG
GAAGTATGGCTTTGCAAGCGAGAGATGAAGGACACACAAGACGCACAAGG
AGAAGAATAGCAGTTGAGCCCCGTAGTCTAGGAGTGCCTAGATCGCGTCA
TGCCGAGGACGGTGCGACAGATTTGTTTCAGGAATTGGCCTCCTTGCGAA
ACGAATTAGACACAATCACTGGAATACTCAACATATGA
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protein sequence of Gvermi12350.t1

>Gvermi12350.t1 ID=Gvermi12350.t1|Name=Gvermi12350.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=polypeptide|length=796bp
MLLPLTPPLTPPMSAAPSPPSTPPHSNLLNSYAAHMKSLSAALDTRAHAL
RTAEARLESRGSALRAHERALASLERRMRSEMTAFLRDVAARQRQLSRWE
QRAEKGRKLVASITNNKEQLKTTKTALEHKNAQLQLVEKEYAALAQSRDT
VTSQIEAAKTELSRLATEARRISDEKIRLETLANRLEMLEGAVRKRERDV
DATEAAVTLKSERLASLENFERVVAPLQTFVDEFCALEQREAVSIRDDVA
EGVQLALLALREMHSKLRSLKDTRAQLDSLQATLEQRENSLRERELSLRQ
REHNLDVTEAKVSNEQDKLSMQSNQLKDGMRSLDDTRADIDRREEAAHKK
ERELMQRESKLHNRETAITQSEKTLARRERSIRRAHAAVAEREKLIDQRE
REVETERAKFNNMKRSIDLREVMLETKELELVAREASVPNNSRPFLSDNS
AKIKQRSQGLQHDTQSGIQELQDPIGEEVTKEHSVSEEGGTDDKADVPLS
RKQLPPRTVRRQLEFETIKRSVPNVSQNDIRREDRDDNDNESEVAAEQLL
PELVSARALWKERILRLEVVVRNMRENTWGLKAHVQPVLHAVAERLGAVR
KEIESAPLQHSAGSSKRDYAAEQGLQVRWGSIMREQLDAVREVQTGMLIG
LNKQEDIAQSGVASDESSSAGEVNSGIRSAGSLEQESSVEATLDVTTTVE
LKDNLRGQKKEVRAVPSLFQGIGSRRQARGSQNGSMALQARDEGHTRRTR
RRIAVEPRSLGVPRSRHAEDGATDLFQELASLRNELDTITGILNI*
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mRNA from alignment at ScGOVlb_3404:4303363..4305750-

Legend: polypeptideCDSexonstart_codonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Gvermi12350.t1 ID=Gvermi12350.t1|Name=Gvermi12350.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=2388bp|location=Sequence derived from alignment at ScGOVlb_3404:4303363..4305750- (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
ATGCTCCTGCCTCTCACGCCGCCGCTCACGCCCCCCATGTCCGCAGCACC
CTCCCCGCCATCCACTCCCCCCCACAGCAATCTGCTTAACTCGTACGCCG
CCCATATGAAGAGTCTTTCCGCCGCGCTCGATACGCGCGCGCACGCATTG
CGTACCGCCGAAGCGCGGCTTGAGAGCCGCGGCAGCGCGCTTAGAGCTCA
TGAAAGGGCTCTGGCCTCTCTCGAGCGCCGGATGAGGTCAGAGATGACTG
CCTTTCTGCGCGATGTTGCTGCGAGACAGAGGCAACTCTCGCGGTGGGAA
CAGCGTGCCGAAAAGGGCAGAAAGCTTGTTGCGTCTATCACCAACAACAA
GGAGCAGCTGAAAACAACTAAAACAGCGCTTGAGCATAAGAACGCTCAGC
TTCAGCTTGTGGAGAAGGAGTATGCCGCCTTGGCTCAGTCTCGCGATACA
GTTACCTCTCAGATTGAGGCTGCAAAGACAGAGCTCAGTCGACTAGCCAC
GGAAGCCAGACGTATTTCGGATGAGAAGATTCGTCTGGAAACGCTCGCCA
ACCGCCTTGAAATGCTTGAGGGTGCTGTCAGAAAGCGAGAGCGCGACGTG
GACGCCACTGAGGCTGCTGTCACCCTTAAATCGGAACGCCTGGCATCTCT
GGAGAACTTTGAGCGTGTTGTAGCACCGCTGCAGACATTTGTTGATGAGT
TTTGTGCCTTGGAACAAAGGGAAGCAGTTTCGATACGTGACGATGTCGCA
GAGGGCGTACAACTCGCTCTTTTGGCCTTACGTGAAATGCATTCCAAATT
GCGCTCCTTGAAAGACACGCGCGCCCAGTTGGATTCATTGCAAGCTACTC
TGGAGCAAAGGGAAAATAGTTTGAGAGAAAGAGAACTTTCCTTAAGACAG
AGAGAACACAATTTGGATGTTACCGAAGCAAAAGTATCCAATGAACAAGA
CAAATTATCTATGCAGAGCAATCAATTGAAGGATGGAATGCGTTCTCTTG
ATGATACCCGTGCAGATATCGACCGACGAGAAGAGGCTGCTCACAAAAAA
GAACGTGAACTGATGCAGAGAGAGTCCAAATTACACAATCGTGAAACGGC
TATCACCCAGTCCGAAAAAACTCTGGCTAGAAGAGAGCGTTCAATCCGAC
GGGCTCATGCTGCTGTCGCAGAACGAGAAAAGCTCATCGATCAGCGTGAA
CGCGAAGTCGAAACCGAACGCGCCAAGTTCAACAATATGAAACGTTCTAT
TGATCTCCGTGAGGTGATGTTGGAGACTAAAGAACTTGAGCTTGTGGCTA
GAGAGGCGTCGGTACCAAACAATTCACGTCCGTTTCTCTCTGACAACTCT
GCGAAGATCAAGCAACGGTCTCAGGGTCTTCAACATGATACGCAGTCTGG
TATACAAGAACTTCAAGACCCGATCGGTGAGGAGGTCACAAAAGAGCACT
CTGTAAGTGAAGAAGGAGGCACAGATGACAAAGCGGACGTGCCACTATCT
CGAAAGCAACTGCCACCGCGCACAGTACGACGCCAATTAGAGTTTGAAAC
AATCAAAAGAAGTGTTCCTAATGTGAGCCAAAACGATATACGACGAGAAG
ATCGTGATGATAATGACAATGAGAGTGAAGTGGCGGCCGAACAGCTGCTG
CCAGAACTTGTAAGTGCTAGGGCTTTGTGGAAGGAGCGCATCTTGAGACT
AGAGGTGGTGGTGCGTAACATGCGCGAGAATACATGGGGATTGAAGGCCC
ATGTGCAACCTGTTCTTCACGCGGTAGCAGAAAGACTCGGGGCTGTGAGG
AAAGAAATTGAGTCGGCACCATTGCAACATTCAGCTGGAAGTTCAAAGCG
CGACTACGCAGCGGAGCAAGGTTTACAGGTGCGCTGGGGCTCTATTATGC
GAGAGCAGTTGGACGCCGTTAGAGAGGTTCAAACTGGTATGCTGATTGGA
CTTAACAAGCAAGAGGATATTGCGCAATCAGGCGTCGCGAGCGACGAATC
AAGTAGTGCAGGCGAGGTAAATAGCGGCATAAGGAGCGCTGGTAGCTTGG
AACAGGAAAGCTCGGTGGAGGCCACTCTGGATGTTACCACAACTGTGGAA
CTGAAGGATAACCTGCGGGGTCAAAAGAAAGAAGTTCGGGCAGTTCCATC
CTTGTTCCAGGGCATCGGTAGTCGTCGCCAAGCTCGCGGAAGCCAAAATG
GAAGTATGGCTTTGCAAGCGAGAGATGAAGGACACACAAGACGCACAAGG
AGAAGAATAGCAGTTGAGCCCCGTAGTCTAGGAGTGCCTAGATCGCGTCA
TGCCGAGGACGGTGCGACAGATTTGTTTCAGGAATTGGCCTCCTTGCGAA
ACGAATTAGACACAATCACTGGAATACTCAACATATGA
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Coding sequence (CDS) from alignment at ScGOVlb_3404:4303363..4305750-

>Gvermi12350.t1 ID=Gvermi12350.t1|Name=Gvermi12350.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=CDS|length=2388bp|location=Sequence derived from alignment at ScGOVlb_3404:4303363..4305750- (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
ATGCTCCTGCCTCTCACGCCGCCGCTCACGCCCCCCATGTCCGCAGCACC
CTCCCCGCCATCCACTCCCCCCCACAGCAATCTGCTTAACTCGTACGCCG
CCCATATGAAGAGTCTTTCCGCCGCGCTCGATACGCGCGCGCACGCATTG
CGTACCGCCGAAGCGCGGCTTGAGAGCCGCGGCAGCGCGCTTAGAGCTCA
TGAAAGGGCTCTGGCCTCTCTCGAGCGCCGGATGAGGTCAGAGATGACTG
CCTTTCTGCGCGATGTTGCTGCGAGACAGAGGCAACTCTCGCGGTGGGAA
CAGCGTGCCGAAAAGGGCAGAAAGCTTGTTGCGTCTATCACCAACAACAA
GGAGCAGCTGAAAACAACTAAAACAGCGCTTGAGCATAAGAACGCTCAGC
TTCAGCTTGTGGAGAAGGAGTATGCCGCCTTGGCTCAGTCTCGCGATACA
GTTACCTCTCAGATTGAGGCTGCAAAGACAGAGCTCAGTCGACTAGCCAC
GGAAGCCAGACGTATTTCGGATGAGAAGATTCGTCTGGAAACGCTCGCCA
ACCGCCTTGAAATGCTTGAGGGTGCTGTCAGAAAGCGAGAGCGCGACGTG
GACGCCACTGAGGCTGCTGTCACCCTTAAATCGGAACGCCTGGCATCTCT
GGAGAACTTTGAGCGTGTTGTAGCACCGCTGCAGACATTTGTTGATGAGT
TTTGTGCCTTGGAACAAAGGGAAGCAGTTTCGATACGTGACGATGTCGCA
GAGGGCGTACAACTCGCTCTTTTGGCCTTACGTGAAATGCATTCCAAATT
GCGCTCCTTGAAAGACACGCGCGCCCAGTTGGATTCATTGCAAGCTACTC
TGGAGCAAAGGGAAAATAGTTTGAGAGAAAGAGAACTTTCCTTAAGACAG
AGAGAACACAATTTGGATGTTACCGAAGCAAAAGTATCCAATGAACAAGA
CAAATTATCTATGCAGAGCAATCAATTGAAGGATGGAATGCGTTCTCTTG
ATGATACCCGTGCAGATATCGACCGACGAGAAGAGGCTGCTCACAAAAAA
GAACGTGAACTGATGCAGAGAGAGTCCAAATTACACAATCGTGAAACGGC
TATCACCCAGTCCGAAAAAACTCTGGCTAGAAGAGAGCGTTCAATCCGAC
GGGCTCATGCTGCTGTCGCAGAACGAGAAAAGCTCATCGATCAGCGTGAA
CGCGAAGTCGAAACCGAACGCGCCAAGTTCAACAATATGAAACGTTCTAT
TGATCTCCGTGAGGTGATGTTGGAGACTAAAGAACTTGAGCTTGTGGCTA
GAGAGGCGTCGGTACCAAACAATTCACGTCCGTTTCTCTCTGACAACTCT
GCGAAGATCAAGCAACGGTCTCAGGGTCTTCAACATGATACGCAGTCTGG
TATACAAGAACTTCAAGACCCGATCGGTGAGGAGGTCACAAAAGAGCACT
CTGTAAGTGAAGAAGGAGGCACAGATGACAAAGCGGACGTGCCACTATCT
CGAAAGCAACTGCCACCGCGCACAGTACGACGCCAATTAGAGTTTGAAAC
AATCAAAAGAAGTGTTCCTAATGTGAGCCAAAACGATATACGACGAGAAG
ATCGTGATGATAATGACAATGAGAGTGAAGTGGCGGCCGAACAGCTGCTG
CCAGAACTTGTAAGTGCTAGGGCTTTGTGGAAGGAGCGCATCTTGAGACT
AGAGGTGGTGGTGCGTAACATGCGCGAGAATACATGGGGATTGAAGGCCC
ATGTGCAACCTGTTCTTCACGCGGTAGCAGAAAGACTCGGGGCTGTGAGG
AAAGAAATTGAGTCGGCACCATTGCAACATTCAGCTGGAAGTTCAAAGCG
CGACTACGCAGCGGAGCAAGGTTTACAGGTGCGCTGGGGCTCTATTATGC
GAGAGCAGTTGGACGCCGTTAGAGAGGTTCAAACTGGTATGCTGATTGGA
CTTAACAAGCAAGAGGATATTGCGCAATCAGGCGTCGCGAGCGACGAATC
AAGTAGTGCAGGCGAGGTAAATAGCGGCATAAGGAGCGCTGGTAGCTTGG
AACAGGAAAGCTCGGTGGAGGCCACTCTGGATGTTACCACAACTGTGGAA
CTGAAGGATAACCTGCGGGGTCAAAAGAAAGAAGTTCGGGCAGTTCCATC
CTTGTTCCAGGGCATCGGTAGTCGTCGCCAAGCTCGCGGAAGCCAAAATG
GAAGTATGGCTTTGCAAGCGAGAGATGAAGGACACACAAGACGCACAAGG
AGAAGAATAGCAGTTGAGCCCCGTAGTCTAGGAGTGCCTAGATCGCGTCA
TGCCGAGGACGGTGCGACAGATTTGTTTCAGGAATTGGCCTCCTTGCGAA
ACGAATTAGACACAATCACTGGAATACTCAACATATGA
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