Gvermi12198.t1 (mRNA) Gracilaria vermiculophylla HapMaleFtJ_2017 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	Gvermi12198.t1
Unique Name	Gvermi12198.t1
Type	mRNA
Organism	Gracilaria vermiculophylla HapMaleFtJ_2017 male (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
Sequence length	360

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
ScGOVlb_3404	contig	ScGOVlb_3404:3824255..3825334 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gracilaria vermiculophylla HapMaleFtJ_2017 male OGS1.0	2022-05-09

Properties


Property Name	Value
Seed ortholog	42099.EPrPV00000016339
PFAMs	PP2C
Max annot lvl	121069\|Pythiales
Evalue	1.44e-25
EggNOG OGs	COG0631@1\|root,KOG0698@2759\|Eukaryota,1MDVZ@121069\|Pythiales
Description	Sigma factor PP2C-like phosphatases
COG category	T

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
Gvermi12198	Gvermi12198	Gracilaria vermiculophylla HapMaleFtJ_2017 male	gene	ScGOVlb_3404 3824255..3825334 +

The following start_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gvermi12198.t1.start1	Gvermi12198.t1.start1	Gracilaria vermiculophylla HapMaleFtJ_2017 male	start_codon	ScGOVlb_3404 3824255..3824257 +

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gvermi12198.t1.CDS1	Gvermi12198.t1.CDS1	Gracilaria vermiculophylla HapMaleFtJ_2017 male	CDS	ScGOVlb_3404 3824255..3825334 +

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gvermi12198.t1.exon1	Gvermi12198.t1.exon1	Gracilaria vermiculophylla HapMaleFtJ_2017 male	exon	ScGOVlb_3404 3824255..3825334 +

The following stop_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gvermi12198.t1.stop1	Gvermi12198.t1.stop1	Gracilaria vermiculophylla HapMaleFtJ_2017 male	stop_codon	ScGOVlb_3404 3825332..3825334 +

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gvermi12198.t1	Gvermi12198.t1	Gracilaria vermiculophylla HapMaleFtJ_2017 male	polypeptide	ScGOVlb_3404 3824255..3825334 +

Sequences

The following sequences are available for this feature:

mRNA sequence
mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at ScGOVlb_3404:3824255..3825334+
coding sequence from alignment at ScGOVlb_3404:3824255..3825334+

mRNA sequence

>Gvermi12198.t1 ID=Gvermi12198.t1|Name=Gvermi12198.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=360bp
MSANVPPPVSLGASLPTLTDAAALSQRASVARLPSAIAHELPTTCFPRTP
PPPRKRPRPRISLPPFDFIPPANVSSLPASFYPPVPSAKDNHAVVGLWTN
HAHSACASRRGSRRAQNEDRVFCDHAHRIYGVCDGHGAGAVPHAPREQVA
ADTVRQMLPAALLTMAPPDAFQHVDRAVLARLDDRSVVGTTVALVRLFAA
PRALQVAHVGDSRVVLVRADGGARTLTEDHSPRRADEARRIERAGGYVLR
GRVNDILAVSRAIGDSLLKYVVPPTPDVGTFALGDNDAVALIGTDGLWDV
LTDAQAGAVCRDVLVQRGGCMGAATLQHMADAILAKCALFGRGDDATVVV
VDVSKGACV*

spliced messenger RNA

>Gvermi12198.t1 ID=Gvermi12198.t1|Name=Gvermi12198.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=1080bp|location=Sequence derived from alignment at ScGOVlb_3404:3824255..3825334+ (Gracilaria vermiculophylla HapMaleFtJ_2017 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGTCGGCCAACGTTCCGCCTCCCGTGTCGCTCGGCGCCTCCCTGCCCAC
CCTCACCGACGCCGCCGCCCTCTCGCAGCGCGCCTCCGTCGCGCGCCTGC
CCTCCGCCATCGCCCACGAGCTGCCCACCACGTGCTTCCCGCGCACTCCT
CCACCCCCAAGAAAGAGGCCGCGCCCCAGGATCTCGCTGCCGCCGTTCGA
TTTCATCCCCCCCGCCAACGTGTCGTCGCTGCCCGCCTCCTTCTACCCGC
CCGTGCCGTCCGCCAAGGACAACCACGCCGTCGTCGGGCTGTGGACCAAc
cacgcccactcggcgtgcgccagccgccgcggctcgcgccgcgcCCAGAA
CGAAGATCGCGTCTTCTGCGACCACGCGCACCGCATCTACGGCGTGTGCG
ACGGCCATGGCGCCGGCGCCGTACCGCACGCGCCGCGCGAGCAGGTGGCC
GCCGACACGGTGCGCCAGATGCTGCCGGCCGCGCTGCTCACCATGGCGCC
GCCGGACGCCTTCCAGCACGTGGATCGCGCCGTGCTGGCCAGGCTGGACG
ACCGCAGCGTCGTCGGCACCACGGTGGCGCTGGTGCGCCTGTTCGCCGCG
CCGCGCGCGCTGCAGGTGGCGCACGTGGGCGACTCGCGCGTCGTGCTGGT
GCGCGCCGACGGCGGCGCGCGCACGCTCACGGAAGACCACTCGCCGCGCC
GCGCCGACGAGGCGCGCCGCATCGAGCGCGCCGGCGGCTACGTGCTGCGC
GGCCGCGTCAACGACATCCTGGCCGTCAGCCGCGCCATCGGCGACAGCCT
GCTCAAGTACGTGGTGCCGCCCACGCCGGACGTGGGCACGTTTGCGCTCG
GCGACAACGACGCCGTGGCGCTCATCGGCACGGACGGGCTGTGGGACGTG
CTGACGGACGCGCAGGCCGGTGCGGTGTGTCGCGACGTGCTGGTGCAGCG
CGGCGGCTGCATGGGCGCGGCCACTCTGCAGCACATGGCCGACGCCATTC
TGGCAAAGTGCGCCCTGTTTGGCCGCGGCGACGACGCCACCGTTGTGGTG
GTGGACGTCAGCAAGGGCGCCTGTGTGTAG

protein sequence of Gvermi12198.t1

>Gvermi12198.t1 ID=Gvermi12198.t1|Name=Gvermi12198.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=polypeptide|length=360bp
MSANVPPPVSLGASLPTLTDAAALSQRASVARLPSAIAHELPTTCFPRTP
PPPRKRPRPRISLPPFDFIPPANVSSLPASFYPPVPSAKDNHAVVGLWTN
HAHSACASRRGSRRAQNEDRVFCDHAHRIYGVCDGHGAGAVPHAPREQVA
ADTVRQMLPAALLTMAPPDAFQHVDRAVLARLDDRSVVGTTVALVRLFAA
PRALQVAHVGDSRVVLVRADGGARTLTEDHSPRRADEARRIERAGGYVLR
GRVNDILAVSRAIGDSLLKYVVPPTPDVGTFALGDNDAVALIGTDGLWDV
LTDAQAGAVCRDVLVQRGGCMGAATLQHMADAILAKCALFGRGDDATVVV
VDVSKGACV*

mRNA from alignment at ScGOVlb_3404:3824255..3825334+

Legend: start_codonpolypeptideCDSexonstop_codon

Hold the cursor over a type above to highlight its positions in the sequence below.

>Gvermi12198.t1 ID=Gvermi12198.t1|Name=Gvermi12198.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=1080bp|location=Sequence derived from alignment at ScGOVlb_3404:3824255..3825334+ (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
ATGTCGGCCAACGTTCCGCCTCCCGTGTCGCTCGGCGCCTCCCTGCCCAC
CCTCACCGACGCCGCCGCCCTCTCGCAGCGCGCCTCCGTCGCGCGCCTGC
CCTCCGCCATCGCCCACGAGCTGCCCACCACGTGCTTCCCGCGCACTCCT
CCACCCCCAAGAAAGAGGCCGCGCCCCAGGATCTCGCTGCCGCCGTTCGA
TTTCATCCCCCCCGCCAACGTGTCGTCGCTGCCCGCCTCCTTCTACCCGC
CCGTGCCGTCCGCCAAGGACAACCACGCCGTCGTCGGGCTGTGGACCAAc
cacgcccactcggcgtgcgccagccgccgcggctcgcgccgcgcCCAGAA
CGAAGATCGCGTCTTCTGCGACCACGCGCACCGCATCTACGGCGTGTGCG
ACGGCCATGGCGCCGGCGCCGTACCGCACGCGCCGCGCGAGCAGGTGGCC
GCCGACACGGTGCGCCAGATGCTGCCGGCCGCGCTGCTCACCATGGCGCC
GCCGGACGCCTTCCAGCACGTGGATCGCGCCGTGCTGGCCAGGCTGGACG
ACCGCAGCGTCGTCGGCACCACGGTGGCGCTGGTGCGCCTGTTCGCCGCG
CCGCGCGCGCTGCAGGTGGCGCACGTGGGCGACTCGCGCGTCGTGCTGGT
GCGCGCCGACGGCGGCGCGCGCACGCTCACGGAAGACCACTCGCCGCGCC
GCGCCGACGAGGCGCGCCGCATCGAGCGCGCCGGCGGCTACGTGCTGCGC
GGCCGCGTCAACGACATCCTGGCCGTCAGCCGCGCCATCGGCGACAGCCT
GCTCAAGTACGTGGTGCCGCCCACGCCGGACGTGGGCACGTTTGCGCTCG
GCGACAACGACGCCGTGGCGCTCATCGGCACGGACGGGCTGTGGGACGTG
CTGACGGACGCGCAGGCCGGTGCGGTGTGTCGCGACGTGCTGGTGCAGCG
CGGCGGCTGCATGGGCGCGGCCACTCTGCAGCACATGGCCGACGCCATTC
TGGCAAAGTGCGCCCTGTTTGGCCGCGGCGACGACGCCACCGTTGTGGTG
GTGGACGTCAGCAAGGGCGCCTGTGTGTAG

Coding sequence (CDS) from alignment at ScGOVlb_3404:3824255..3825334+

>Gvermi12198.t1 ID=Gvermi12198.t1|Name=Gvermi12198.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=CDS|length=1080bp|location=Sequence derived from alignment at ScGOVlb_3404:3824255..3825334+ (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
ATGTCGGCCAACGTTCCGCCTCCCGTGTCGCTCGGCGCCTCCCTGCCCAC
CCTCACCGACGCCGCCGCCCTCTCGCAGCGCGCCTCCGTCGCGCGCCTGC
CCTCCGCCATCGCCCACGAGCTGCCCACCACGTGCTTCCCGCGCACTCCT
CCACCCCCAAGAAAGAGGCCGCGCCCCAGGATCTCGCTGCCGCCGTTCGA
TTTCATCCCCCCCGCCAACGTGTCGTCGCTGCCCGCCTCCTTCTACCCGC
CCGTGCCGTCCGCCAAGGACAACCACGCCGTCGTCGGGCTGTGGACCAAc
cacgcccactcggcgtgcgccagccgccgcggctcgcgccgcgcCCAGAA
CGAAGATCGCGTCTTCTGCGACCACGCGCACCGCATCTACGGCGTGTGCG
ACGGCCATGGCGCCGGCGCCGTACCGCACGCGCCGCGCGAGCAGGTGGCC
GCCGACACGGTGCGCCAGATGCTGCCGGCCGCGCTGCTCACCATGGCGCC
GCCGGACGCCTTCCAGCACGTGGATCGCGCCGTGCTGGCCAGGCTGGACG
ACCGCAGCGTCGTCGGCACCACGGTGGCGCTGGTGCGCCTGTTCGCCGCG
CCGCGCGCGCTGCAGGTGGCGCACGTGGGCGACTCGCGCGTCGTGCTGGT
GCGCGCCGACGGCGGCGCGCGCACGCTCACGGAAGACCACTCGCCGCGCC
GCGCCGACGAGGCGCGCCGCATCGAGCGCGCCGGCGGCTACGTGCTGCGC
GGCCGCGTCAACGACATCCTGGCCGTCAGCCGCGCCATCGGCGACAGCCT
GCTCAAGTACGTGGTGCCGCCCACGCCGGACGTGGGCACGTTTGCGCTCG
GCGACAACGACGCCGTGGCGCTCATCGGCACGGACGGGCTGTGGGACGTG
CTGACGGACGCGCAGGCCGGTGCGGTGTGTCGCGACGTGCTGGTGCAGCG
CGGCGGCTGCATGGGCGCGGCCACTCTGCAGCACATGGCCGACGCCATTC
TGGCAAAGTGCGCCCTGTTTGGCCGCGGCGACGACGCCACCGTTGTGGTG
GTGGACGTCAGCAAGGGCGCCTGTGTGTAG