Gvermi4447.t1 (polypeptide) Gracilaria vermiculophylla HapMaleFtJ_2017 male

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NameGvermi4447.t1
Unique NameGvermi4447.t1
Typepolypeptide
OrganismGracilaria vermiculophylla HapMaleFtJ_2017 male (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
Sequence length345
Homology
BLAST of Gvermi4447.t1 vs. uniprot
Match: A0A2V3J202_9FLOR (Uncharacterized protein n=1 Tax=Gracilariopsis chorda TaxID=448386 RepID=A0A2V3J202_9FLOR)

HSP 1 Score: 419 bits (1078), Expect = 4.570e-144
Identity = 224/322 (69.57%), Postives = 258/322 (80.12%), Query Frame = 0
Query:    6 SSNSNYARIVAYIERVRQEIKLFKAQLANLLTATPTPESRNAARELLNHIKANEAALEKADAKVQRLRLAGRVLSRSTVPVPASRRAKRALSVLIAADPRLPD--TARRRAARPRYLTLAGKQPATPIREDALPPLVDRAAELTSANLTLVDPHHVRLQWRHVFTAHIWFSEAPAPGGAAPGPDQKPAVHVVPEHIACFSTDEAHAGRWSRSVHAVFNVMTERAQAAIRFFMAREHTGEDAFTELVLWLVKHHNIFSAKCEERRLAFDASRGIFLPPCVHPFDGSGPARFTRGTIPVRSTSAQQGARPAHGSQTRSHMSAAA 325
            S+NS  A+  A I+RV+QEI LFKAQ+  + T T  PE+RNAARELLNH+KA+E  LEKA+AKVQRLR  GRVLSR TVPVPAS RAKRAL++L AADP L    + R++ ARPRYLTLAGK+PATPIRE+ LP L+ R ++L S N+T++    V L WRH+F+A IWF E PAP  A P P  K  V+VVPEHIACF TDE +A RWS S HAVFNVMTERAQAAIR+FMARE TGEDAF EL+LWLVKHHNIFSAKC++RRLAFDASRGIFLPPCVHPFDGSGPARFTRGTIPVR+TS QQ +R AH SQ +S   AAA
Sbjct:    3 SNNSVVAKTAANIDRVKQEINLFKAQITQIATPTAAPETRNAARELLNHVKASEINLEKAEAKVQRLRPIGRVLSRPTVPVPASERAKRALTILNAADPSLAHGRSVRQKTARPRYLTLAGKKPATPIREEDLPALLKRTSQLVSTNITILKTSAVTLDWRHIFSACIWFKEVPAPKDAQPKPGGKSPVYVVPEHIACFRTDE-NASRWSCSDHAVFNVMTERAQAAIRYFMAREETGEDAFVELILWLVKHHNIFSAKCDDRRLAFDASRGIFLPPCVHPFDGSGPARFTRGTIPVRNTSTQQ-SRLAHPSQQQSGTHAAA 322          
BLAST of Gvermi4447.t1 vs. uniprot
Match: R7QC80_CHOCR (Uncharacterized protein n=1 Tax=Chondrus crispus TaxID=2769 RepID=R7QC80_CHOCR)

HSP 1 Score: 199 bits (505), Expect = 5.440e-57
Identity = 122/296 (41.22%), Postives = 165/296 (55.74%), Query Frame = 0
Query:   36 LTATPTPESRNAARELLNHIKANEAALEKADAKVQRLRLAGRVLSRSTVPVPASRRAKRALSVLIAA-----------------DPRLPDTARRRAAR---------PRYLTLAGKQPATPIREDALPPLVDRAAELTSANLTLVDPHH-VRLQWRHVFTAHIWFSEAPAPGGAAPGPDQKPAVHVVPEHIACFSTDEAHAGRWSRSVHAVFNVMTERAQAAIRFFMAREHTGEDAFTELVLWLVKHHNIFSAKCEERRLAFDASRGIFLPPCVHPFDGSGPARFTRGTIPVRSTS 304
            L    T   R+  + L+   +  EA L K +  + R +   R+ +R T   P S RAKRALSVL+                    P + D  R R  R         P  L+  GK  ATPIR+D++   + RAA  T  +L  +   + V  + R+VF A++WF +   P       + + + +V PEHIA F  DE +  RWSRS + VFNV++ERA AAIRF+M RE TGEDAF  LV WL +H ++F+AKCE RR+AFDASRG+FLPPCV+PF+     RFTRG+IP+R  S
Sbjct:    9 LARPETTADRDVLKTLIQRTQRLEAHLHKVEVTLTRSKPGPRIPTRPTASTPPSIRAKRALSVLLTGLNSSNCAKRLGNMAGHDSPDITDDERDRIVRRKTEAIVGKPILLSSTGKVKATPIRDDSIAATLKRAARGTDLSLVQIHSSNGVLFECRNVFRAYMWFKQVDPPTEKRTPAELRHSYNV-PEHIAFFGIDERNISRWSRSQYGVFNVVSERANAAIRFYMNRETTGEDAFVALVKWLSRHKSLFTAKCERRRVAFDASRGMFLPPCVYPFEEDASPRFTRGSIPLRHIS 303          
BLAST of Gvermi4447.t1 vs. uniprot
Match: A0A7S1TCL9_9RHOD (Hypothetical protein n=1 Tax=Compsopogon caeruleus TaxID=31354 RepID=A0A7S1TCL9_9RHOD)

HSP 1 Score: 88.2 bits (217), Expect = 3.920e-16
Identity = 60/189 (31.75%), Postives = 94/189 (49.74%), Query Frame = 0
Query:  125 KQPATPIREDALPPLVDRAAELTSANLTL-VDPHHVRLQWRHVFTAHIWFSEAPAPGGAAPGPDQKPAVHVVPEHIACFSTDEAHAGRWSRSVHAVFNVMTERAQAAIRFFMAREHTGEDAFTELVLWLVKHHNIFSAKCEE--RRLAFDASRGIFLPPCVHPFDGSGPARFTRGTIPVRSTSAQQGAR 310
            K   TP+R++ L  +++  +    + ++L V P+ + +     F A IWF+++P  G    G        + PEH+      E    RWS S H VF +++ERA AA  FF  ++ +G D+   L+ WL  H  +   +  E  R LAFD+SRG +LPPCV  F+ +   R        R+T   +G R
Sbjct:  110 KATLTPLRQEQLINVINALSTRLPSFMSLQVAPNGMHVTVHDTFIAGIWFTDSPFAGVMIEGT-------LEPEHVNVVGRREP-LSRWSVSQHTVFRLLSERATAAAYFFWRKDISGVDSLFRLLDWLGIHSKLLQDQSVEDSRHLAFDSSRGTYLPPCVRGFEDNRSGRSGYEERGTRTTEDARGPR 290          
BLAST of Gvermi4447.t1 vs. uniprot
Match: M2XYD3_GALSU (Uncharacterized protein n=1 Tax=Galdieria sulphuraria TaxID=130081 RepID=M2XYD3_GALSU)

HSP 1 Score: 59.3 bits (142), Expect = 2.440e-6
Identity = 35/94 (37.23%), Postives = 52/94 (55.32%), Query Frame = 0
Query:  196 PEHIACFSTDEAHAGRWSRSVHAVFNVMTERAQAAIRFFMAREHTG----EDAFTELVLWLVKHHNIFSAKCEERRLAFDASRGIFLPPCVHPF 285
            P  +  F  DE H   WS S + +F +++ERAQAA+ ++M +        E A   L+LW +K H+ +    E+ +L FD +R  FLPPCV  F
Sbjct:  180 PYSVRIFGVDE-HVVYWSWSKYHIFRLISERAQAALCYYMEKAMYSNQPIEKALDTLLLW-IKSHDTW----EDWKLRFDMARSSFLPPCVRSF 267          
The following BLAST results are available for this feature:
BLAST of Gvermi4447.t1 vs. uniprot
Analysis Date: 2022-06-02 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 4
Match NameE-valueIdentityDescription
A0A2V3J202_9FLOR4.570e-14469.57Uncharacterized protein n=1 Tax=Gracilariopsis cho... [more]
R7QC80_CHOCR5.440e-5741.22Uncharacterized protein n=1 Tax=Chondrus crispus T... [more]
A0A7S1TCL9_9RHOD3.920e-1631.75Hypothetical protein n=1 Tax=Compsopogon caeruleus... [more]
M2XYD3_GALSU2.440e-637.23Uncharacterized protein n=1 Tax=Galdieria sulphura... [more]
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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-06-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableCOILSCoilCoilcoord: 48..75
NoneNo IPR availableCOILSCoilCoilcoord: 18..38
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 292..344
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 297..324
IPR021627Mediator complex, subunit Med27PFAMPF11571Med27coord: 211..286
e-value: 1.4E-8
score: 35.0

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
ScGOVlb_147contigScGOVlb_147:2001156..2002190 -
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-06-01
Diamond blastp: OGS1.0 vs UniRef902022-06-02
Gracilaria vermiculophylla HapMaleFtJ_2017 male OGS1.02022-05-09
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
Gvermi4447.t1Gvermi4447.t1Gracilaria vermiculophylla HapMaleFtJ_2017 malemRNAScGOVlb_147 2001156..2002190 -


Sequences
The following sequences are available for this feature:

polypeptide sequence

>Gvermi4447.t1 ID=Gvermi4447.t1|Name=Gvermi4447.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=polypeptide|length=345bp
MASSGSSNSNYARIVAYIERVRQEIKLFKAQLANLLTATPTPESRNAARE
LLNHIKANEAALEKADAKVQRLRLAGRVLSRSTVPVPASRRAKRALSVLI
AADPRLPDTARRRAARPRYLTLAGKQPATPIREDALPPLVDRAAELTSAN
LTLVDPHHVRLQWRHVFTAHIWFSEAPAPGGAAPGPDQKPAVHVVPEHIA
CFSTDEAHAGRWSRSVHAVFNVMTERAQAAIRFFMAREHTGEDAFTELVL
WLVKHHNIFSAKCEERRLAFDASRGIFLPPCVHPFDGSGPARFTRGTIPV
RSTSAQQGARPAHGSQTRSHMSAAAHAAQTARHDARIAAQRQRA*
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR021627Mediator_Med27