Gvermi12353.t1 (mRNA) Gracilaria vermiculophylla HapMaleFtJ_2017 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGvermi12353.t1
Unique NameGvermi12353.t1
TypemRNA
OrganismGracilaria vermiculophylla HapMaleFtJ_2017 male (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
Sequence length513
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
ScGOVlb_3404contigScGOVlb_3404:4313905..4315443 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria vermiculophylla HapMaleFtJ_2017 male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog1128912.GMES_0797
PFAMsUnbV_ASPIC,VCBS
Max annot lvl1236|Gammaproteobacteria
Evalue2.51e-46
EggNOG OGsCOG2931@1|root,COG2931@2|Bacteria,1R7ZV@1224|Proteobacteria,1RPUG@1236|Gammaproteobacteria,4653G@72275|Alteromonadaceae
DescriptionASPIC and UnbV
COG categoryQ
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Gvermi12353Gvermi12353Gracilaria vermiculophylla HapMaleFtJ_2017 malegeneScGOVlb_3404 4313905..4315443 -


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi12353.t1.stop1Gvermi12353.t1.stop1Gracilaria vermiculophylla HapMaleFtJ_2017 malestop_codonScGOVlb_3404 4313905..4313907 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi12353.t1.CDS1Gvermi12353.t1.CDS1Gracilaria vermiculophylla HapMaleFtJ_2017 maleCDSScGOVlb_3404 4313905..4315443 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi12353.t1.exon1Gvermi12353.t1.exon1Gracilaria vermiculophylla HapMaleFtJ_2017 maleexonScGOVlb_3404 4313905..4315443 -


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi12353.t1.start1Gvermi12353.t1.start1Gracilaria vermiculophylla HapMaleFtJ_2017 malestart_codonScGOVlb_3404 4315441..4315443 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi12353.t1Gvermi12353.t1Gracilaria vermiculophylla HapMaleFtJ_2017 malepolypeptideScGOVlb_3404 4313905..4315443 -


Sequences
The following sequences are available for this feature:

mRNA sequence

>Gvermi12353.t1 ID=Gvermi12353.t1|Name=Gvermi12353.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=513bp
MHIFPNLPSVFFIIIFLLLCSVCGQRIPFFAEESARVGLNSERRRRKKYG
GPTIVDLDRDGHPDMIFSHHDDNTAELFFNKGNGIFKKSNWRQWHDTHGI
VAGPMSPFTKSILFTMSIGGNRGSKPAAPVSFEVNPNRKIKDISKSAGLD
EIKGRGRTALLMNLSGRKDRAAFPDLLYMNAPFKNARQSSVAFAYENSNG
KYKPRKVKGLTKNRNWYAMATDIDGDLKMEVVTYWGQITVWKLTSPFTFT
DITGSVLPKGIPREGVVSIAELDYDNDGDFDLYVARTKSGDLRWTPGDNI
EDILLENRNGKYVDVSRRAKLPRRMMSRGVTVADFNNDGYIDILVTQYVE
KDILLLNRGDGTFRTVRGPIFRPGNVRGDSAIAVDYNSDGLVDIVSSQGD
QHEKRWGGQYRMFKNITPKGQNQKFISVRVGNAMNRSATPLHAVVTVIAG
PLRMIRRVGSPGATVSRSYLETVHFGLGNQRKVESITVQYTSGYKQKIHN
RRAGETVRVGRF*
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spliced messenger RNA

>Gvermi12353.t1 ID=Gvermi12353.t1|Name=Gvermi12353.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=1539bp|location=Sequence derived from alignment at ScGOVlb_3404:4313905..4315443- (Gracilaria vermiculophylla HapMaleFtJ_2017 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGCATATTTTCCCTAACCTTCCCAGCGTCTTCTTCATTATCATTTTCCT
TCTCCTCTGCTCAGTTTGTGGACAGCGGATCCCATTCTTTGCGGAAGAAA
GCGCACGTGTTGGTCTTAATTCTGAACGAAGACGACGCAAGAAGTATGGA
GGTCCCACTATTGTTGATCTCGACAGAGACGGACATCCTGACATGATTTT
CTCCCACCACGATGACAATACCGCTGAGCTGTTTTTCAACAAAGGGAATG
GAATTTTCAAGAAATCAAACTGGAGACAATGGCACGATACACATGGAATA
GTGGCTGGTCCTATGTCGCCCTTTACAAAATCCATTCTCTTCACAATGTC
GATTGGGGGAAATAGGGGAAGTAAACCAGCTGCACCCGTTTCCTTTGAAG
TAAACCCGAATCGAAAGATTAAGGACATCTCAAAGTCAGCCGGCCTAGAC
GAAATCAAAGGCCGAGGTCGAACGGCTCTGCTCATGAATCTATCAGGAAG
AAAAGATCGTGCAGCGTTTCCTGATCTTCTGTACATGAATGCCCCCTTTA
AGAACGCTAGGCAGTCCTCCGTAGCATTTGCCTACGAGAATTCGAACGGA
AAATACAAACCCCGAAAAGTTAAGGGCTTGACAAAGAATAGAAACTGGTA
TGCCATGGCCACGGACATTGATGGTGATTTGAAGATGGAAGTTGTGACTT
ATTGGGGTCAGATTACTGTCTGGAAATTAACATCGCCTTTCACTTTTACT
GACATCACCGGTTCCGTGTTGCCAAAGGGAATCCCGCGTGAGGGTGTCGT
CTCAATAGCAGAATTAGATTATGACAATGACGGCGATTTTGATTTGTACG
TCGCTCGGACAAAGTCCGGAGATCTGCGCTGGACACCTGGAGATAACATA
GAGGATATACTGTTAGAAAACCGCAACGGGAAGTATGTGGACGTTTCCAG
AAGAGCTAAGCTGCCGCGGCGCATGATGTCCCGAGGAGTAACTGTAGCCG
ATTTTAACAACGACGGATATATCGACATACTTGTAACACAATATGTGGAA
AAGGACATACTTCTTCTCAATCGCGGTGATGGTACATTTCGTACAGTACG
AGGTCCGATTTTCAGACCTGGAAACGTTCGAGGTGACAGTGCGATAGCTG
TTGATTACAATTCTGACGGGCTCGTGGACATTGTATCGAGCCAGGGTGAT
CAACATGAGAAGCGGTGGGGTGGGCAATACCGCATGTTTAAGAATATCAC
TCCCAAGGGACAGAACCAGAAATTCATATCAGTTAGAGTAGGCAACGCCA
TGAATCGAAGTGCTACGCCCCTTCATGCCGTCGTCACTGTGATTGCTGGT
CCTCTAAGGATGATTAGACGCGTCGGATCGCCCGGAGCCACGGTATCTCG
TTCGTACCTAGAAACCGTTCATTTCGGTTTAGGAAATCAAAGGAAGGTGG
AATCCATAACAGTTCAATATACGAGTGGCTACAAGCAGAAGATCCACAAT
CGCCGTGCTGGAGAGACAGTACGAGTTGGGCGATTCTAA
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protein sequence of Gvermi12353.t1

>Gvermi12353.t1 ID=Gvermi12353.t1|Name=Gvermi12353.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=polypeptide|length=513bp
MHIFPNLPSVFFIIIFLLLCSVCGQRIPFFAEESARVGLNSERRRRKKYG
GPTIVDLDRDGHPDMIFSHHDDNTAELFFNKGNGIFKKSNWRQWHDTHGI
VAGPMSPFTKSILFTMSIGGNRGSKPAAPVSFEVNPNRKIKDISKSAGLD
EIKGRGRTALLMNLSGRKDRAAFPDLLYMNAPFKNARQSSVAFAYENSNG
KYKPRKVKGLTKNRNWYAMATDIDGDLKMEVVTYWGQITVWKLTSPFTFT
DITGSVLPKGIPREGVVSIAELDYDNDGDFDLYVARTKSGDLRWTPGDNI
EDILLENRNGKYVDVSRRAKLPRRMMSRGVTVADFNNDGYIDILVTQYVE
KDILLLNRGDGTFRTVRGPIFRPGNVRGDSAIAVDYNSDGLVDIVSSQGD
QHEKRWGGQYRMFKNITPKGQNQKFISVRVGNAMNRSATPLHAVVTVIAG
PLRMIRRVGSPGATVSRSYLETVHFGLGNQRKVESITVQYTSGYKQKIHN
RRAGETVRVGRF*
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mRNA from alignment at ScGOVlb_3404:4313905..4315443-

Legend: polypeptideCDSexonstart_codonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Gvermi12353.t1 ID=Gvermi12353.t1|Name=Gvermi12353.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=1539bp|location=Sequence derived from alignment at ScGOVlb_3404:4313905..4315443- (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
ATGCATATTTTCCCTAACCTTCCCAGCGTCTTCTTCATTATCATTTTCCT
TCTCCTCTGCTCAGTTTGTGGACAGCGGATCCCATTCTTTGCGGAAGAAA
GCGCACGTGTTGGTCTTAATTCTGAACGAAGACGACGCAAGAAGTATGGA
GGTCCCACTATTGTTGATCTCGACAGAGACGGACATCCTGACATGATTTT
CTCCCACCACGATGACAATACCGCTGAGCTGTTTTTCAACAAAGGGAATG
GAATTTTCAAGAAATCAAACTGGAGACAATGGCACGATACACATGGAATA
GTGGCTGGTCCTATGTCGCCCTTTACAAAATCCATTCTCTTCACAATGTC
GATTGGGGGAAATAGGGGAAGTAAACCAGCTGCACCCGTTTCCTTTGAAG
TAAACCCGAATCGAAAGATTAAGGACATCTCAAAGTCAGCCGGCCTAGAC
GAAATCAAAGGCCGAGGTCGAACGGCTCTGCTCATGAATCTATCAGGAAG
AAAAGATCGTGCAGCGTTTCCTGATCTTCTGTACATGAATGCCCCCTTTA
AGAACGCTAGGCAGTCCTCCGTAGCATTTGCCTACGAGAATTCGAACGGA
AAATACAAACCCCGAAAAGTTAAGGGCTTGACAAAGAATAGAAACTGGTA
TGCCATGGCCACGGACATTGATGGTGATTTGAAGATGGAAGTTGTGACTT
ATTGGGGTCAGATTACTGTCTGGAAATTAACATCGCCTTTCACTTTTACT
GACATCACCGGTTCCGTGTTGCCAAAGGGAATCCCGCGTGAGGGTGTCGT
CTCAATAGCAGAATTAGATTATGACAATGACGGCGATTTTGATTTGTACG
TCGCTCGGACAAAGTCCGGAGATCTGCGCTGGACACCTGGAGATAACATA
GAGGATATACTGTTAGAAAACCGCAACGGGAAGTATGTGGACGTTTCCAG
AAGAGCTAAGCTGCCGCGGCGCATGATGTCCCGAGGAGTAACTGTAGCCG
ATTTTAACAACGACGGATATATCGACATACTTGTAACACAATATGTGGAA
AAGGACATACTTCTTCTCAATCGCGGTGATGGTACATTTCGTACAGTACG
AGGTCCGATTTTCAGACCTGGAAACGTTCGAGGTGACAGTGCGATAGCTG
TTGATTACAATTCTGACGGGCTCGTGGACATTGTATCGAGCCAGGGTGAT
CAACATGAGAAGCGGTGGGGTGGGCAATACCGCATGTTTAAGAATATCAC
TCCCAAGGGACAGAACCAGAAATTCATATCAGTTAGAGTAGGCAACGCCA
TGAATCGAAGTGCTACGCCCCTTCATGCCGTCGTCACTGTGATTGCTGGT
CCTCTAAGGATGATTAGACGCGTCGGATCGCCCGGAGCCACGGTATCTCG
TTCGTACCTAGAAACCGTTCATTTCGGTTTAGGAAATCAAAGGAAGGTGG
AATCCATAACAGTTCAATATACGAGTGGCTACAAGCAGAAGATCCACAAT
CGCCGTGCTGGAGAGACAGTACGAGTTGGGCGATTCTAA
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Coding sequence (CDS) from alignment at ScGOVlb_3404:4313905..4315443-

>Gvermi12353.t1 ID=Gvermi12353.t1|Name=Gvermi12353.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=CDS|length=1539bp|location=Sequence derived from alignment at ScGOVlb_3404:4313905..4315443- (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
ATGCATATTTTCCCTAACCTTCCCAGCGTCTTCTTCATTATCATTTTCCT
TCTCCTCTGCTCAGTTTGTGGACAGCGGATCCCATTCTTTGCGGAAGAAA
GCGCACGTGTTGGTCTTAATTCTGAACGAAGACGACGCAAGAAGTATGGA
GGTCCCACTATTGTTGATCTCGACAGAGACGGACATCCTGACATGATTTT
CTCCCACCACGATGACAATACCGCTGAGCTGTTTTTCAACAAAGGGAATG
GAATTTTCAAGAAATCAAACTGGAGACAATGGCACGATACACATGGAATA
GTGGCTGGTCCTATGTCGCCCTTTACAAAATCCATTCTCTTCACAATGTC
GATTGGGGGAAATAGGGGAAGTAAACCAGCTGCACCCGTTTCCTTTGAAG
TAAACCCGAATCGAAAGATTAAGGACATCTCAAAGTCAGCCGGCCTAGAC
GAAATCAAAGGCCGAGGTCGAACGGCTCTGCTCATGAATCTATCAGGAAG
AAAAGATCGTGCAGCGTTTCCTGATCTTCTGTACATGAATGCCCCCTTTA
AGAACGCTAGGCAGTCCTCCGTAGCATTTGCCTACGAGAATTCGAACGGA
AAATACAAACCCCGAAAAGTTAAGGGCTTGACAAAGAATAGAAACTGGTA
TGCCATGGCCACGGACATTGATGGTGATTTGAAGATGGAAGTTGTGACTT
ATTGGGGTCAGATTACTGTCTGGAAATTAACATCGCCTTTCACTTTTACT
GACATCACCGGTTCCGTGTTGCCAAAGGGAATCCCGCGTGAGGGTGTCGT
CTCAATAGCAGAATTAGATTATGACAATGACGGCGATTTTGATTTGTACG
TCGCTCGGACAAAGTCCGGAGATCTGCGCTGGACACCTGGAGATAACATA
GAGGATATACTGTTAGAAAACCGCAACGGGAAGTATGTGGACGTTTCCAG
AAGAGCTAAGCTGCCGCGGCGCATGATGTCCCGAGGAGTAACTGTAGCCG
ATTTTAACAACGACGGATATATCGACATACTTGTAACACAATATGTGGAA
AAGGACATACTTCTTCTCAATCGCGGTGATGGTACATTTCGTACAGTACG
AGGTCCGATTTTCAGACCTGGAAACGTTCGAGGTGACAGTGCGATAGCTG
TTGATTACAATTCTGACGGGCTCGTGGACATTGTATCGAGCCAGGGTGAT
CAACATGAGAAGCGGTGGGGTGGGCAATACCGCATGTTTAAGAATATCAC
TCCCAAGGGACAGAACCAGAAATTCATATCAGTTAGAGTAGGCAACGCCA
TGAATCGAAGTGCTACGCCCCTTCATGCCGTCGTCACTGTGATTGCTGGT
CCTCTAAGGATGATTAGACGCGTCGGATCGCCCGGAGCCACGGTATCTCG
TTCGTACCTAGAAACCGTTCATTTCGGTTTAGGAAATCAAAGGAAGGTGG
AATCCATAACAGTTCAATATACGAGTGGCTACAAGCAGAAGATCCACAAT
CGCCGTGCTGGAGAGACAGTACGAGTTGGGCGATTCTAA
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