Gvermi12277.t1 (mRNA) Gracilaria vermiculophylla HapMaleFtJ_2017 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGvermi12277.t1
Unique NameGvermi12277.t1
TypemRNA
OrganismGracilaria vermiculophylla HapMaleFtJ_2017 male (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
Sequence length770
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
ScGOVlb_3404contigScGOVlb_3404:4081098..4083407 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria vermiculophylla HapMaleFtJ_2017 male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog45157.CMS493CT
PFAMsMethyltransf_3,Rhodanese,Rhodanese_C,zf-BED
Max annot lvl2759|Eukaryota
Evalue3.5e-110
EggNOG OGsCOG4122@1|root,KOG1663@2759|Eukaryota
DescriptionO-methyltransferase activity
COG categoryP
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Gvermi12277Gvermi12277Gracilaria vermiculophylla HapMaleFtJ_2017 malegeneScGOVlb_3404 4081098..4083407 -


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi12277.t1.stop1Gvermi12277.t1.stop1Gracilaria vermiculophylla HapMaleFtJ_2017 malestop_codonScGOVlb_3404 4081098..4081100 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi12277.t1.CDS1Gvermi12277.t1.CDS1Gracilaria vermiculophylla HapMaleFtJ_2017 maleCDSScGOVlb_3404 4081098..4083407 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi12277.t1.exon1Gvermi12277.t1.exon1Gracilaria vermiculophylla HapMaleFtJ_2017 maleexonScGOVlb_3404 4081098..4083407 -


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi12277.t1.start1Gvermi12277.t1.start1Gracilaria vermiculophylla HapMaleFtJ_2017 malestart_codonScGOVlb_3404 4083405..4083407 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi12277.t1Gvermi12277.t1Gracilaria vermiculophylla HapMaleFtJ_2017 malepolypeptideScGOVlb_3404 4081098..4083407 -


Sequences
The following sequences are available for this feature:

mRNA sequence

>Gvermi12277.t1 ID=Gvermi12277.t1|Name=Gvermi12277.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=770bp
MGALFVPGRVLLGSSSLLRSRSSRVLIRACAQHNSGAPKQRARDRRRETA
LARLNAHKALKNELEERSGDLIGAIVALPPFVRERCSLTPKLARVKVFLE
HSDLNDVNVFRGRVRSRLVHIFPELEERGLLRDSDAFDIKVGGSDVTEDV
GSLKRGIKKCENVGSPVFVEVIPHNTPAPKQPLSKRVERVKAKAQIAEQN
PSEQLNMVSFYKFVNIERPEAFSHVLRRVWSWLGVKGRVYVGTEGINAQL
AVPHSVLEDFRDAMSGAWMERGEAIVPKEVVGVFLNFDNLVKKHDQPFQK
LRVKPREKILADGFQKPLDWERAGQPISAEEWHQLLKSKAEDFILLDCRN
DYESDVGRFEGAELLNTSTFRDSWKELEKRLSHEDRSKRILTYCTGGIRC
VKVNAFLEQEMGFSNTGRLQGGIVSYARTLRETGRLDESTFKGVNHVFDG
RMGEIITTDLLDRCTTCGHPCNFQTDCANVHCPRPFDSRIFVQCANCAAL
MKGACSPTCLSALSNSLEQVEEVPSGISPRLHNSELYAEIFSTPAVPEHA
ELKRRTETRFPERIRMMSSNAQASLLRMLVTISGAKRVLEIGSFTGFATI
AMASGVPEDGIVITCEIDEQAASVAEELFTKNSECRGKIRMCRGDALDIL
ERFRAENTEPFDFAFVDANKGGYRDYAKNLLDYGLVRIGGLLVFDNVLFR
GEVADVWNAETSYIVPESQGNDCRGQSNFRVRRTAEKLHVFNKYINEENR
IEQVLIPFRDGLTVARRIQ*
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spliced messenger RNA

>Gvermi12277.t1 ID=Gvermi12277.t1|Name=Gvermi12277.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=2310bp|location=Sequence derived from alignment at ScGOVlb_3404:4081098..4083407- (Gracilaria vermiculophylla HapMaleFtJ_2017 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGGGAGCGTTGTTCGTGCCCGGGCGTGTTCTACTTGGAAGTAGCTCATT
GCTTCGATCAAGATCCAGCCGCGTTCTGATACGAGCATGCGCGCAGCACA
ATTCGGGCGCTCCGAAGCAACGTGCAAGAGATCGAAGGAGGGAAACGGCA
TTAGCGCGCTTGAATGCACACAAAGCACTAAAAAACGAACTGGAAGAACG
ATCAGGTGATCTTATTGGCGCTATTGTTGCCCTACCTCCGTTTGTACGGG
AAAGGTGCTCCCTAACACCCAAACTTGCCAGAGTAAAGGTGTTTCTTGAA
CATTCCGATCTTAACGATGTCAATGTATTTAGAGGGCGCGTCAGGTCGCG
ATTGGTGCACATTTTTCCAGAGCTTGAAGAGCGCGGTCTTCTTCGTGATT
CTGATGCGTTTGATATAAAAGTTGGGGGTAGTGATGTGACTGAAGACGTT
GGGAGTCTAAAACGCGGGATCAAGAAGTGTGAAAATGTCGGCTCGCCTGT
GTTTGTCGAAGTCATACCTCACAATACCCCAGCCCCGAAGCAACCGCTTT
CAAAGAGGGTCGAGAGAGTGAAAGCCAAGGCACAGATAGCAGAACAAAAT
CCTAGTGAACAACTGAACATGGTAAGCTTTTACAAGTTTGTGAATATTGA
AAGGCCTGAAGCATTCAGCCATGTTTTGCGTAGGGTGTGGTCGTGGTTAG
GCGTGAAGGGGAGAGTGTATGTCGGGACTGAGGGTATCAACGCGCAACTG
GCTGTTCCCCATTCTGTCTTAGAAGATTTTCGCGATGCCATGAGTGGCGC
CTGGATGGAACGTGGTGAAGCGATCGTCCCAAAAGAAGTTGTTGGTGTCT
TCTTGAATTTCGACAACTTGGTGAAAAAGCATGACCAGCCTTTTCAAAAG
CTGCGAGTGAAGCCTCGGGAAAAGATTCTCGCAGACGGGTTTCAAAAACC
ATTGGATTGGGAACGCGCTGGACAGCCGATATCCGCTGAAGAATGGCACC
AGCTTCTAAAATCTAAAGCGGAGGATTTCATTTTACTTGACTGTCGTAAT
GATTATGAGAGCGACGTCGGACGTTTCGAAGGAGCTGAACTGTTGAACAC
GTCGACTTTTCGAGATTCTTGGAAAGAACTGGAGAAGCGGTTAAGCCACG
AAGACCGAAGCAAAAGAATCTTGACGTACTGTACAGGCGGCATCCGATGT
GTGAAAGTCAATGCGTTTCTTGAACAAGAGATGGGCTTTTCAAACACTGG
GCGTCTTCAAGGAGGAATAGTGTCATACGCTCGCACTCTAAGAGAGACTG
GGCGTTTGGACGAGTCGACTTTCAAAGGCGTGAACCATGTGTTTGATGGT
CGAATGGGAGAAATTATCACGACGGATTTGCTTGACAGATGCACAACTTG
CGGTCACCCATGCAATTTCCAGACGGATTGTGCAAATGTGCATTGTCCTC
GTCCATTCGATTCACGCATCTTTGTCCAATGTGCGAACTGTGCTGCGCTA
ATGAAAGGTGCATGTTCACCTACATGCCTCAGTGCATTGAGTAACTCGTT
GGAGCAGGTGGAAGAAGTTCCGAGCGGTATATCCCCGCGATTGCATAACT
CGGAGCTATACGCTGAAATCTTCTCCACCCCTGCTGTACCAGAGCACGCC
GAGTTGAAACGACGGACCGAAACAAGATTTCCAGAGAGAATACGAATGAT
GAGCTCAAACGCGCAAGCATCGCTACTCCGTATGCTTGTTACGATATCAG
GGGCGAAGCGAGTGTTGGAAATCGGCAGCTTTACCGGATTCGCAACAATA
GCAATGGCGTCAGGAGTGCCAGAAGACGGGATAGTGATCACGTGCGAGAT
TGATGAACAAGCAGCATCTGTTGCCGAGGAACTGTTTACAAAGAATAGCG
AATGTCGGGGCAAAATTCGGATGTGTCGTGGAGACGCCCTTGACATTTTG
GAACGGTTTCGCGCTGAAAACACAGAACCGTTTGATTTTGCCTTCGTTGA
TGCCAATAAAGGGGGGTATCGCGACTACGCCAAAAACCTACTGGATTACG
GACTGGTGCGAATCGGGGGGTTGCTCGTCTTCGACAACGTTCTTTTCCGA
GGGGAGGTTGCAGATGTGTGGAACGCAGAAACCTCGTACATCGTTCCTGA
ATCTCAAGGAAACGACTGCCGAGGACAGAGCAACTTCAGAGTTAGGCGCA
CCGCAGAGAAATTGCACGTTTTCAATAAGTACATTAATGAAGAAAACAGA
ATAGAGCAGGTTCTCATACCCTTCCGTGATGGGCTAACCGTTGCGAGACG
TATACAATAA
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protein sequence of Gvermi12277.t1

>Gvermi12277.t1 ID=Gvermi12277.t1|Name=Gvermi12277.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=polypeptide|length=770bp
MGALFVPGRVLLGSSSLLRSRSSRVLIRACAQHNSGAPKQRARDRRRETA
LARLNAHKALKNELEERSGDLIGAIVALPPFVRERCSLTPKLARVKVFLE
HSDLNDVNVFRGRVRSRLVHIFPELEERGLLRDSDAFDIKVGGSDVTEDV
GSLKRGIKKCENVGSPVFVEVIPHNTPAPKQPLSKRVERVKAKAQIAEQN
PSEQLNMVSFYKFVNIERPEAFSHVLRRVWSWLGVKGRVYVGTEGINAQL
AVPHSVLEDFRDAMSGAWMERGEAIVPKEVVGVFLNFDNLVKKHDQPFQK
LRVKPREKILADGFQKPLDWERAGQPISAEEWHQLLKSKAEDFILLDCRN
DYESDVGRFEGAELLNTSTFRDSWKELEKRLSHEDRSKRILTYCTGGIRC
VKVNAFLEQEMGFSNTGRLQGGIVSYARTLRETGRLDESTFKGVNHVFDG
RMGEIITTDLLDRCTTCGHPCNFQTDCANVHCPRPFDSRIFVQCANCAAL
MKGACSPTCLSALSNSLEQVEEVPSGISPRLHNSELYAEIFSTPAVPEHA
ELKRRTETRFPERIRMMSSNAQASLLRMLVTISGAKRVLEIGSFTGFATI
AMASGVPEDGIVITCEIDEQAASVAEELFTKNSECRGKIRMCRGDALDIL
ERFRAENTEPFDFAFVDANKGGYRDYAKNLLDYGLVRIGGLLVFDNVLFR
GEVADVWNAETSYIVPESQGNDCRGQSNFRVRRTAEKLHVFNKYINEENR
IEQVLIPFRDGLTVARRIQ*
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mRNA from alignment at ScGOVlb_3404:4081098..4083407-

Legend: polypeptideCDSexonstart_codonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Gvermi12277.t1 ID=Gvermi12277.t1|Name=Gvermi12277.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=2310bp|location=Sequence derived from alignment at ScGOVlb_3404:4081098..4083407- (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
ATGGGAGCGTTGTTCGTGCCCGGGCGTGTTCTACTTGGAAGTAGCTCATT
GCTTCGATCAAGATCCAGCCGCGTTCTGATACGAGCATGCGCGCAGCACA
ATTCGGGCGCTCCGAAGCAACGTGCAAGAGATCGAAGGAGGGAAACGGCA
TTAGCGCGCTTGAATGCACACAAAGCACTAAAAAACGAACTGGAAGAACG
ATCAGGTGATCTTATTGGCGCTATTGTTGCCCTACCTCCGTTTGTACGGG
AAAGGTGCTCCCTAACACCCAAACTTGCCAGAGTAAAGGTGTTTCTTGAA
CATTCCGATCTTAACGATGTCAATGTATTTAGAGGGCGCGTCAGGTCGCG
ATTGGTGCACATTTTTCCAGAGCTTGAAGAGCGCGGTCTTCTTCGTGATT
CTGATGCGTTTGATATAAAAGTTGGGGGTAGTGATGTGACTGAAGACGTT
GGGAGTCTAAAACGCGGGATCAAGAAGTGTGAAAATGTCGGCTCGCCTGT
GTTTGTCGAAGTCATACCTCACAATACCCCAGCCCCGAAGCAACCGCTTT
CAAAGAGGGTCGAGAGAGTGAAAGCCAAGGCACAGATAGCAGAACAAAAT
CCTAGTGAACAACTGAACATGGTAAGCTTTTACAAGTTTGTGAATATTGA
AAGGCCTGAAGCATTCAGCCATGTTTTGCGTAGGGTGTGGTCGTGGTTAG
GCGTGAAGGGGAGAGTGTATGTCGGGACTGAGGGTATCAACGCGCAACTG
GCTGTTCCCCATTCTGTCTTAGAAGATTTTCGCGATGCCATGAGTGGCGC
CTGGATGGAACGTGGTGAAGCGATCGTCCCAAAAGAAGTTGTTGGTGTCT
TCTTGAATTTCGACAACTTGGTGAAAAAGCATGACCAGCCTTTTCAAAAG
CTGCGAGTGAAGCCTCGGGAAAAGATTCTCGCAGACGGGTTTCAAAAACC
ATTGGATTGGGAACGCGCTGGACAGCCGATATCCGCTGAAGAATGGCACC
AGCTTCTAAAATCTAAAGCGGAGGATTTCATTTTACTTGACTGTCGTAAT
GATTATGAGAGCGACGTCGGACGTTTCGAAGGAGCTGAACTGTTGAACAC
GTCGACTTTTCGAGATTCTTGGAAAGAACTGGAGAAGCGGTTAAGCCACG
AAGACCGAAGCAAAAGAATCTTGACGTACTGTACAGGCGGCATCCGATGT
GTGAAAGTCAATGCGTTTCTTGAACAAGAGATGGGCTTTTCAAACACTGG
GCGTCTTCAAGGAGGAATAGTGTCATACGCTCGCACTCTAAGAGAGACTG
GGCGTTTGGACGAGTCGACTTTCAAAGGCGTGAACCATGTGTTTGATGGT
CGAATGGGAGAAATTATCACGACGGATTTGCTTGACAGATGCACAACTTG
CGGTCACCCATGCAATTTCCAGACGGATTGTGCAAATGTGCATTGTCCTC
GTCCATTCGATTCACGCATCTTTGTCCAATGTGCGAACTGTGCTGCGCTA
ATGAAAGGTGCATGTTCACCTACATGCCTCAGTGCATTGAGTAACTCGTT
GGAGCAGGTGGAAGAAGTTCCGAGCGGTATATCCCCGCGATTGCATAACT
CGGAGCTATACGCTGAAATCTTCTCCACCCCTGCTGTACCAGAGCACGCC
GAGTTGAAACGACGGACCGAAACAAGATTTCCAGAGAGAATACGAATGAT
GAGCTCAAACGCGCAAGCATCGCTACTCCGTATGCTTGTTACGATATCAG
GGGCGAAGCGAGTGTTGGAAATCGGCAGCTTTACCGGATTCGCAACAATA
GCAATGGCGTCAGGAGTGCCAGAAGACGGGATAGTGATCACGTGCGAGAT
TGATGAACAAGCAGCATCTGTTGCCGAGGAACTGTTTACAAAGAATAGCG
AATGTCGGGGCAAAATTCGGATGTGTCGTGGAGACGCCCTTGACATTTTG
GAACGGTTTCGCGCTGAAAACACAGAACCGTTTGATTTTGCCTTCGTTGA
TGCCAATAAAGGGGGGTATCGCGACTACGCCAAAAACCTACTGGATTACG
GACTGGTGCGAATCGGGGGGTTGCTCGTCTTCGACAACGTTCTTTTCCGA
GGGGAGGTTGCAGATGTGTGGAACGCAGAAACCTCGTACATCGTTCCTGA
ATCTCAAGGAAACGACTGCCGAGGACAGAGCAACTTCAGAGTTAGGCGCA
CCGCAGAGAAATTGCACGTTTTCAATAAGTACATTAATGAAGAAAACAGA
ATAGAGCAGGTTCTCATACCCTTCCGTGATGGGCTAACCGTTGCGAGACG
TATACAATAA
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Coding sequence (CDS) from alignment at ScGOVlb_3404:4081098..4083407-

>Gvermi12277.t1 ID=Gvermi12277.t1|Name=Gvermi12277.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=CDS|length=2310bp|location=Sequence derived from alignment at ScGOVlb_3404:4081098..4083407- (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
ATGGGAGCGTTGTTCGTGCCCGGGCGTGTTCTACTTGGAAGTAGCTCATT
GCTTCGATCAAGATCCAGCCGCGTTCTGATACGAGCATGCGCGCAGCACA
ATTCGGGCGCTCCGAAGCAACGTGCAAGAGATCGAAGGAGGGAAACGGCA
TTAGCGCGCTTGAATGCACACAAAGCACTAAAAAACGAACTGGAAGAACG
ATCAGGTGATCTTATTGGCGCTATTGTTGCCCTACCTCCGTTTGTACGGG
AAAGGTGCTCCCTAACACCCAAACTTGCCAGAGTAAAGGTGTTTCTTGAA
CATTCCGATCTTAACGATGTCAATGTATTTAGAGGGCGCGTCAGGTCGCG
ATTGGTGCACATTTTTCCAGAGCTTGAAGAGCGCGGTCTTCTTCGTGATT
CTGATGCGTTTGATATAAAAGTTGGGGGTAGTGATGTGACTGAAGACGTT
GGGAGTCTAAAACGCGGGATCAAGAAGTGTGAAAATGTCGGCTCGCCTGT
GTTTGTCGAAGTCATACCTCACAATACCCCAGCCCCGAAGCAACCGCTTT
CAAAGAGGGTCGAGAGAGTGAAAGCCAAGGCACAGATAGCAGAACAAAAT
CCTAGTGAACAACTGAACATGGTAAGCTTTTACAAGTTTGTGAATATTGA
AAGGCCTGAAGCATTCAGCCATGTTTTGCGTAGGGTGTGGTCGTGGTTAG
GCGTGAAGGGGAGAGTGTATGTCGGGACTGAGGGTATCAACGCGCAACTG
GCTGTTCCCCATTCTGTCTTAGAAGATTTTCGCGATGCCATGAGTGGCGC
CTGGATGGAACGTGGTGAAGCGATCGTCCCAAAAGAAGTTGTTGGTGTCT
TCTTGAATTTCGACAACTTGGTGAAAAAGCATGACCAGCCTTTTCAAAAG
CTGCGAGTGAAGCCTCGGGAAAAGATTCTCGCAGACGGGTTTCAAAAACC
ATTGGATTGGGAACGCGCTGGACAGCCGATATCCGCTGAAGAATGGCACC
AGCTTCTAAAATCTAAAGCGGAGGATTTCATTTTACTTGACTGTCGTAAT
GATTATGAGAGCGACGTCGGACGTTTCGAAGGAGCTGAACTGTTGAACAC
GTCGACTTTTCGAGATTCTTGGAAAGAACTGGAGAAGCGGTTAAGCCACG
AAGACCGAAGCAAAAGAATCTTGACGTACTGTACAGGCGGCATCCGATGT
GTGAAAGTCAATGCGTTTCTTGAACAAGAGATGGGCTTTTCAAACACTGG
GCGTCTTCAAGGAGGAATAGTGTCATACGCTCGCACTCTAAGAGAGACTG
GGCGTTTGGACGAGTCGACTTTCAAAGGCGTGAACCATGTGTTTGATGGT
CGAATGGGAGAAATTATCACGACGGATTTGCTTGACAGATGCACAACTTG
CGGTCACCCATGCAATTTCCAGACGGATTGTGCAAATGTGCATTGTCCTC
GTCCATTCGATTCACGCATCTTTGTCCAATGTGCGAACTGTGCTGCGCTA
ATGAAAGGTGCATGTTCACCTACATGCCTCAGTGCATTGAGTAACTCGTT
GGAGCAGGTGGAAGAAGTTCCGAGCGGTATATCCCCGCGATTGCATAACT
CGGAGCTATACGCTGAAATCTTCTCCACCCCTGCTGTACCAGAGCACGCC
GAGTTGAAACGACGGACCGAAACAAGATTTCCAGAGAGAATACGAATGAT
GAGCTCAAACGCGCAAGCATCGCTACTCCGTATGCTTGTTACGATATCAG
GGGCGAAGCGAGTGTTGGAAATCGGCAGCTTTACCGGATTCGCAACAATA
GCAATGGCGTCAGGAGTGCCAGAAGACGGGATAGTGATCACGTGCGAGAT
TGATGAACAAGCAGCATCTGTTGCCGAGGAACTGTTTACAAAGAATAGCG
AATGTCGGGGCAAAATTCGGATGTGTCGTGGAGACGCCCTTGACATTTTG
GAACGGTTTCGCGCTGAAAACACAGAACCGTTTGATTTTGCCTTCGTTGA
TGCCAATAAAGGGGGGTATCGCGACTACGCCAAAAACCTACTGGATTACG
GACTGGTGCGAATCGGGGGGTTGCTCGTCTTCGACAACGTTCTTTTCCGA
GGGGAGGTTGCAGATGTGTGGAACGCAGAAACCTCGTACATCGTTCCTGA
ATCTCAAGGAAACGACTGCCGAGGACAGAGCAACTTCAGAGTTAGGCGCA
CCGCAGAGAAATTGCACGTTTTCAATAAGTACATTAATGAAGAAAACAGA
ATAGAGCAGGTTCTCATACCCTTCCGTGATGGGCTAACCGTTGCGAGACG
TATACAATAA
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