Gvermi12431.t1 (mRNA) Gracilaria vermiculophylla HapMaleFtJ_2017 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGvermi12431.t1
Unique NameGvermi12431.t1
TypemRNA
OrganismGracilaria vermiculophylla HapMaleFtJ_2017 male (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
Sequence length307
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
ScGOVlb_3404contigScGOVlb_3404:4729459..4730379 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria vermiculophylla HapMaleFtJ_2017 male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog130081.XP_005709402.1
Preferred namePHB2
PFAMsBand_7
Max annot lvl2759|Eukaryota
KEGG koko:K17081
GOsGO:0000001,GO:0000003,GO:0000060,GO:0000819,GO:0001101,GO:0001302,GO:0001666,GO:0001763,GO:0001932,GO:0001934,GO:0002009,GO:0002082,GO:0003006,GO:0003008,GO:0003674,GO:0005102,GO:0005488,GO:0005515,GO:0005575,GO:0005618,GO:0005622,GO:0005623,GO:0005634,GO:0005737,GO:0005739,GO:0005740,GO:0005741,GO:0005743,GO:0005746,GO:0005747,GO:0005773,GO:0005774,GO:0005911,GO:0006140,GO:0006355,GO:0006457,GO:0006606,GO:0006810,GO:0006811,GO:0006812,GO:0006816,GO:0006851,GO:0006886,GO:0006913,GO:0006950,GO:0006979,GO:0006996,GO:0007005,GO:0007049,GO:0007059,GO:0007062,GO:0007088,GO:0007096,GO:0007275,GO:0007276,GO:0007281,GO:0007283,GO:0007292,GO:0007346,GO:0007548,GO:0007568,GO:0007569,GO:0007588,GO:0008022,GO:0008104,GO:0008134,GO:0008150,GO:0008285,GO:0008406,GO:0009506,GO:0009507,GO:0009536,GO:0009611,GO:0009628,GO:0009653,GO:0009790,GO:0009792,GO:0009887,GO:0009888,GO:0009889,GO:0009890,GO:0009892,GO:0009893,GO:0009966,GO:0009967,GO:0009968,GO:0009986,GO:0009987,GO:0010033,GO:0010468,GO:0010556,GO:0010558,GO:0010562,GO:0010564,GO:0010604,GO:0010605,GO:0010629,GO:0010638,GO:0010646,GO:0010647,GO:0010648,GO:0010941,GO:0015031,GO:0015833,GO:0016020,GO:0016043,GO:0016363,GO:0017038,GO:0019219,GO:0019220,GO:0019222,GO:0019866,GO:0019867,GO:0019953,GO:0022402,GO:0022412,GO:0022414,GO:0022603,GO:0022612,GO:0023051,GO:0023056,GO:0023057,GO:0030001,GO:0030054,GO:0030154,GO:0030162,GO:0030312,GO:0030331,GO:0030421,GO:0030879,GO:0030964,GO:0031090,GO:0031323,GO:0031324,GO:0031325,GO:0031326,GO:0031327,GO:0031399,GO:0031401,GO:0031536,GO:0031647,GO:0031966,GO:0031967,GO:0031968,GO:0031974,GO:0031975,GO:0031981,GO:0032268,GO:0032269,GO:0032270,GO:0032501,GO:0032502,GO:0032504,GO:0032526,GO:0032989,GO:0032990,GO:0032991,GO:0033036,GO:0033043,GO:0033143,GO:0033144,GO:0033146,GO:0033147,GO:0033218,GO:0033365,GO:0033554,GO:0033599,GO:0033600,GO:0033993,GO:0034220,GO:0034399,GO:0034504,GO:0034613,GO:0035239,GO:0035257,GO:0035258,GO:0035295,GO:0035632,GO:0036293,GO:0036294,GO:0040008,GO:0040014,GO:0040018,GO:0042127,GO:0042221,GO:0042325,GO:0042327,GO:0042695,GO:0042886,GO:0042981,GO:0043051,GO:0043066,GO:0043067,GO:0043069,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043233,GO:0043408,GO:0043410,GO:0043433,GO:0043467,GO:0044092,GO:0044093,GO:0044422,GO:0044424,GO:0044425,GO:0044428,GO:0044429,GO:0044437,GO:0044444,GO:0044446,GO:0044455,GO:0044464,GO:0044703,GO:0045136,GO:0045137,GO:0045184,GO:0045271,GO:0045787,GO:0045840,GO:0045861,GO:0045892,GO:0045927,GO:0045931,GO:0045934,GO:0045937,GO:0046543,GO:0046907,GO:0047485,GO:0048232,GO:0048308,GO:0048311,GO:0048468,GO:0048477,GO:0048513,GO:0048518,GO:0048519,GO:0048522,GO:0048523,GO:0048583,GO:0048584,GO:0048585,GO:0048608,GO:0048609,GO:0048638,GO:0048639,GO:0048729,GO:0048731,GO:0048732,GO:0048754,GO:0048856,GO:0048869,GO:0050678,GO:0050680,GO:0050789,GO:0050793,GO:0050794,GO:0050795,GO:0050821,GO:0050896,GO:0051090,GO:0051091,GO:0051093,GO:0051094,GO:0051128,GO:0051130,GO:0051169,GO:0051170,GO:0051171,GO:0051172,GO:0051173,GO:0051174,GO:0051179,GO:0051234,GO:0051239,GO:0051240,GO:0051241,GO:0051246,GO:0051247,GO:0051248,GO:0051252,GO:0051253,GO:0051276,GO:0051427,GO:0051640,GO:0051641,GO:0051646,GO:0051649,GO:0051704,GO:0051716,GO:0051726,GO:0051783,GO:0051785,GO:0055044,GO:0055085,GO:0060255,GO:0060259,GO:0060429,GO:0060443,GO:0060444,GO:0060548,GO:0060562,GO:0060603,GO:0060688,GO:0060744,GO:0060749,GO:0060762,GO:0061138,GO:0061180,GO:0061377,GO:0061458,GO:0062012,GO:0065007,GO:0065008,GO:0065009,GO:0070013,GO:0070372,GO:0070374,GO:0070469,GO:0070482,GO:0070584,GO:0070588,GO:0070727,GO:0070838,GO:0070887,GO:0071229,GO:0071300,GO:0071310,GO:0071396,GO:0071453,GO:0071456,GO:0071702,GO:0071705,GO:0071840,GO:0071944,GO:0072511,GO:0072594,GO:0080090,GO:0090068,GO:0098588,GO:0098655,GO:0098660,GO:0098662,GO:0098796,GO:0098798,GO:0098800,GO:0098803,GO:0098805,GO:0098813,GO:1900542,GO:1901700,GO:1901701,GO:1901987,GO:1901989,GO:1901990,GO:1901992,GO:1902494,GO:1902531,GO:1902533,GO:1902679,GO:1902806,GO:1902808,GO:1903506,GO:1903507,GO:1903578,GO:1903998,GO:1905330,GO:1990204,GO:2000026,GO:2000027,GO:2000112,GO:2000113,GO:2001141
Evalue4e-141
EggNOG OGsCOG0330@1|root,KOG3090@2759|Eukaryota
Descriptionthelarche
COG categoryO
BRITEko00000,ko03029,ko04147
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Gvermi12431Gvermi12431Gracilaria vermiculophylla HapMaleFtJ_2017 malegeneScGOVlb_3404 4729459..4730379 -


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi12431.t1.stop1Gvermi12431.t1.stop1Gracilaria vermiculophylla HapMaleFtJ_2017 malestop_codonScGOVlb_3404 4729459..4729461 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi12431.t1.CDS1Gvermi12431.t1.CDS1Gracilaria vermiculophylla HapMaleFtJ_2017 maleCDSScGOVlb_3404 4729459..4730379 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi12431.t1.exon1Gvermi12431.t1.exon1Gracilaria vermiculophylla HapMaleFtJ_2017 maleexonScGOVlb_3404 4729459..4730379 -


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi12431.t1.start1Gvermi12431.t1.start1Gracilaria vermiculophylla HapMaleFtJ_2017 malestart_codonScGOVlb_3404 4730377..4730379 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi12431.t1Gvermi12431.t1Gracilaria vermiculophylla HapMaleFtJ_2017 malepolypeptideScGOVlb_3404 4729459..4730379 -


Sequences
The following sequences are available for this feature:

mRNA sequence

>Gvermi12431.t1 ID=Gvermi12431.t1|Name=Gvermi12431.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=307bp
MAQIPPLPNMRMPQAAPPGARALGAIAAGVVGLSSAYRYGLFNVDGGHRA
VLFNRVVGVRERVYGEGTHLRIPFVDMPIIYDVRAKPRNIQSLTGSRDLQ
MVTITLRVLSRPDPEALPNIYRTLGTDWDDRVLPSIVNEVLKSVVAQFNA
SQLITQREQVSKLISQNLMRRALDFHILLDDVSITHLSFGKEYTAAVEAK
QVAQQEAERARFIVEKAKQDKKSAIIRAEGEAQSAQMIGDAMRDNPAFIQ
LRRIEAAREIATVVQRSQNRVYLDADTLQLNLGAIDSVGDTSRPKPDDGK
PSSWLQ*
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spliced messenger RNA

>Gvermi12431.t1 ID=Gvermi12431.t1|Name=Gvermi12431.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=921bp|location=Sequence derived from alignment at ScGOVlb_3404:4729459..4730379- (Gracilaria vermiculophylla HapMaleFtJ_2017 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGGCGCAAATCCCTCCCCTGCCCAACATGCGCATGCCGCAAGCCGCCCC
CCCCGGCGCGCGCGCCCTGGGCGCCATCGCCGCCGGCGTCGTCGGACTCT
CCAGCGCCTACCGCTACGGCCTCTTCAACGTGGACGGCGGCCACCGCGCC
GTGCTGTTCAACCGCGTCGTCGGCGTGCGCGAACGCGTGTACGGCGAGGG
CACACACCTGCGCATCCCGTTCGTCGACATGCCCATCATCTACGACGTGC
GCGCCAAGCCGCGCAACATCCAGTCGCTCACCGGCTCGCGCGATCTGCAG
ATGGTCACCATCACCCTGCGCGTGCTGTCGCGCCCGGACCCCGAGGCGCT
GCCCAACATCTACCGCACGCTGGGCACGGACTGGGACGACCGCGTGCTGC
CCAGCATCGTCAACGAGGTGCTCAAGTCCGTCGTCGCCCAGTTCAACGCC
TCGCAGCTCATCACGCAGCGCGAGCAGGTGTCCAAGCTCATCTCGCAGAA
CCTCATGCGGCGCGCCCTCGACTTCCATATCCTGCTGGACGACGTGTCCA
TCACGCACCTGTCCTTCGGCAAGGAGTACACCGCCGCCGTCGAGGCCAAG
CAGGTGGCGCAGCAGGAGGCCGAGCGCGCCAGATTCATAGTCGAGAAGGC
CAAGCAGGACAAGAAGTCCGCCATCATCCGCGCTGAGGGTGAGGCTCAGT
CGGCGCAGATGATCGGCGACGCCATGCGCGACAATCCGGCCTTTATTCAG
CTGCGAAGAATCGAGGCGGCCAGGGAAATCGCTACCGTTGTGCAAAGAAG
TCAGAACAGAGTGTACTTGGATGCCGACACGCTGCAACTCAACCTCGGCG
CCATTGATTCCGTCGGTGACACGTCCAGGCCCAAACCGGATGACGGAAAG
CCGTCAAGCTGGTTGCAGTGA
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protein sequence of Gvermi12431.t1

>Gvermi12431.t1 ID=Gvermi12431.t1|Name=Gvermi12431.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=polypeptide|length=307bp
MAQIPPLPNMRMPQAAPPGARALGAIAAGVVGLSSAYRYGLFNVDGGHRA
VLFNRVVGVRERVYGEGTHLRIPFVDMPIIYDVRAKPRNIQSLTGSRDLQ
MVTITLRVLSRPDPEALPNIYRTLGTDWDDRVLPSIVNEVLKSVVAQFNA
SQLITQREQVSKLISQNLMRRALDFHILLDDVSITHLSFGKEYTAAVEAK
QVAQQEAERARFIVEKAKQDKKSAIIRAEGEAQSAQMIGDAMRDNPAFIQ
LRRIEAAREIATVVQRSQNRVYLDADTLQLNLGAIDSVGDTSRPKPDDGK
PSSWLQ*
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mRNA from alignment at ScGOVlb_3404:4729459..4730379-

Legend: polypeptideCDSexonstart_codonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Gvermi12431.t1 ID=Gvermi12431.t1|Name=Gvermi12431.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=921bp|location=Sequence derived from alignment at ScGOVlb_3404:4729459..4730379- (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
ATGGCGCAAATCCCTCCCCTGCCCAACATGCGCATGCCGCAAGCCGCCCC
CCCCGGCGCGCGCGCCCTGGGCGCCATCGCCGCCGGCGTCGTCGGACTCT
CCAGCGCCTACCGCTACGGCCTCTTCAACGTGGACGGCGGCCACCGCGCC
GTGCTGTTCAACCGCGTCGTCGGCGTGCGCGAACGCGTGTACGGCGAGGG
CACACACCTGCGCATCCCGTTCGTCGACATGCCCATCATCTACGACGTGC
GCGCCAAGCCGCGCAACATCCAGTCGCTCACCGGCTCGCGCGATCTGCAG
ATGGTCACCATCACCCTGCGCGTGCTGTCGCGCCCGGACCCCGAGGCGCT
GCCCAACATCTACCGCACGCTGGGCACGGACTGGGACGACCGCGTGCTGC
CCAGCATCGTCAACGAGGTGCTCAAGTCCGTCGTCGCCCAGTTCAACGCC
TCGCAGCTCATCACGCAGCGCGAGCAGGTGTCCAAGCTCATCTCGCAGAA
CCTCATGCGGCGCGCCCTCGACTTCCATATCCTGCTGGACGACGTGTCCA
TCACGCACCTGTCCTTCGGCAAGGAGTACACCGCCGCCGTCGAGGCCAAG
CAGGTGGCGCAGCAGGAGGCCGAGCGCGCCAGATTCATAGTCGAGAAGGC
CAAGCAGGACAAGAAGTCCGCCATCATCCGCGCTGAGGGTGAGGCTCAGT
CGGCGCAGATGATCGGCGACGCCATGCGCGACAATCCGGCCTTTATTCAG
CTGCGAAGAATCGAGGCGGCCAGGGAAATCGCTACCGTTGTGCAAAGAAG
TCAGAACAGAGTGTACTTGGATGCCGACACGCTGCAACTCAACCTCGGCG
CCATTGATTCCGTCGGTGACACGTCCAGGCCCAAACCGGATGACGGAAAG
CCGTCAAGCTGGTTGCAGTGA
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Coding sequence (CDS) from alignment at ScGOVlb_3404:4729459..4730379-

>Gvermi12431.t1 ID=Gvermi12431.t1|Name=Gvermi12431.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=CDS|length=921bp|location=Sequence derived from alignment at ScGOVlb_3404:4729459..4730379- (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
ATGGCGCAAATCCCTCCCCTGCCCAACATGCGCATGCCGCAAGCCGCCCC
CCCCGGCGCGCGCGCCCTGGGCGCCATCGCCGCCGGCGTCGTCGGACTCT
CCAGCGCCTACCGCTACGGCCTCTTCAACGTGGACGGCGGCCACCGCGCC
GTGCTGTTCAACCGCGTCGTCGGCGTGCGCGAACGCGTGTACGGCGAGGG
CACACACCTGCGCATCCCGTTCGTCGACATGCCCATCATCTACGACGTGC
GCGCCAAGCCGCGCAACATCCAGTCGCTCACCGGCTCGCGCGATCTGCAG
ATGGTCACCATCACCCTGCGCGTGCTGTCGCGCCCGGACCCCGAGGCGCT
GCCCAACATCTACCGCACGCTGGGCACGGACTGGGACGACCGCGTGCTGC
CCAGCATCGTCAACGAGGTGCTCAAGTCCGTCGTCGCCCAGTTCAACGCC
TCGCAGCTCATCACGCAGCGCGAGCAGGTGTCCAAGCTCATCTCGCAGAA
CCTCATGCGGCGCGCCCTCGACTTCCATATCCTGCTGGACGACGTGTCCA
TCACGCACCTGTCCTTCGGCAAGGAGTACACCGCCGCCGTCGAGGCCAAG
CAGGTGGCGCAGCAGGAGGCCGAGCGCGCCAGATTCATAGTCGAGAAGGC
CAAGCAGGACAAGAAGTCCGCCATCATCCGCGCTGAGGGTGAGGCTCAGT
CGGCGCAGATGATCGGCGACGCCATGCGCGACAATCCGGCCTTTATTCAG
CTGCGAAGAATCGAGGCGGCCAGGGAAATCGCTACCGTTGTGCAAAGAAG
TCAGAACAGAGTGTACTTGGATGCCGACACGCTGCAACTCAACCTCGGCG
CCATTGATTCCGTCGGTGACACGTCCAGGCCCAAACCGGATGACGGAAAG
CCGTCAAGCTGGTTGCAGTGA
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