Gvermi12179.t1 (polypeptide) Gracilaria vermiculophylla HapMaleFtJ_2017 male

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NameGvermi12179.t1
Unique NameGvermi12179.t1
Typepolypeptide
OrganismGracilaria vermiculophylla HapMaleFtJ_2017 male (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
Sequence length407
Homology
BLAST of Gvermi12179.t1 vs. uniprot
Match: A0A2V3J5L2_9FLOR (Cyclin-U4-1 n=1 Tax=Gracilariopsis chorda TaxID=448386 RepID=A0A2V3J5L2_9FLOR)

HSP 1 Score: 238 bits (607), Expect = 5.580e-70
Identity = 116/163 (71.17%), Postives = 138/163 (84.66%), Query Frame = 0
Query:  117 FVGSLSKDEFVEAASQLLDRTAAMNDNTFPLPLYSEPESVFFSVVKPEIPTKEYMKRLVTYTHCSPAAFILMLVYLERVANANKKLVVTPYNMHRLLITALTLACKNLDDQCFANAHYAKVGGIPTVREMNRLELQFLKYLKYVLFVKREEHDRKIAQLFSVE 279
            F+GS+SK++F+E A++ LD  A  N+  F LP+YSEPESVFFSVVKPEIPTKEY+KRLVTYTHCSPAAF++ML+YLERVA    +L+VT +NMHRLLITALTLACKNLDDQCFANAHYAKVGGIPTVREMNRLELQ LKYL   LFV  E++  K+ +L  ++
Sbjct:  206 FLGSMSKEQFIENAARDLDGRANRNEGKFALPVYSEPESVFFSVVKPEIPTKEYLKRLVTYTHCSPAAFVVMLIYLERVARNEARLIVTMFNMHRLLITALTLACKNLDDQCFANAHYAKVGGIPTVREMNRLELQLLKYLDRRLFVTEEDYKAKLKELTGMQ 368          
BLAST of Gvermi12179.t1 vs. uniprot
Match: A0A2V3II09_9FLOR (Cyclin-U4-1 n=1 Tax=Gracilariopsis chorda TaxID=448386 RepID=A0A2V3II09_9FLOR)

HSP 1 Score: 207 bits (526), Expect = 2.190e-59
Identity = 104/166 (62.65%), Postives = 130/166 (78.31%), Query Frame = 0
Query:  117 FVGSLSKDEFVEAASQLLDRTAAMNDNTFPLPLYSEPESVFFSVVKPEIPTKEYMKRLVTYTHCSPAAFILMLVYLERVANANKKLVVTPYNMHRLLITALTLACKNLDDQCFANAHYAKVGGIPTVREMNRLELQFLKYLKYVLFVKREEHDRKIAQLFSVESDS 282
            FVG +SK++FVE AS  LD  A  N+  FPLPLYSE ESVFFSVVKP+IPT +Y+KRLVTY +CSP+AF++ML+Y+ R A    +L+VTP+NMHRLLITAL LACK LDD+C+AN HYAKVGGI +V+EMNRLELQ LKYL   LFV  +E+  ++  L +V+  S
Sbjct:  179 FVGGMSKEQFVENASAHLDLRARQNEGKFPLPLYSEHESVFFSVVKPDIPTSDYLKRLVTYAYCSPSAFVVMLIYMNRTARIACRLMVTPFNMHRLLITALVLACKFLDDKCYANEHYAKVGGIASVQEMNRLELQLLKYLDR-LFVTEDEYRAELNLLTAVQHPS 343          
BLAST of Gvermi12179.t1 vs. uniprot
Match: A0A1X6NWM5_PORUM (Uncharacterized protein n=1 Tax=Porphyra umbilicalis TaxID=2786 RepID=A0A1X6NWM5_PORUM)

HSP 1 Score: 119 bits (297), Expect = 2.620e-25
Identity = 68/168 (40.48%), Postives = 100/168 (59.52%), Query Frame = 0
Query:  148 PLYSEPESVFFSVVKPEIPTKEYMKRLVTYTHCSPAAFILMLVYLERVANANKKLVVTPYNMHRLLITALTLACKNLDDQCFANAHYAKVGGIPTVREMNRLELQFLKYLKYVLFVKREEHD--RKIAQLFSVESDSPKSIHESSLAPHPGAARLSHDGKGMAVGPRA 313
            P  S+  S+FFS+VKP +    Y+ RL+ Y H SP+ FI+ LVYL+R+   + +L++TP NMHRLL+ A+TLA K ++D+   N+  A+VGGIP+  EMNRLE++ L+ L + L V  +  D  R+   L++  SD          AP   AA  +   +G A   RA
Sbjct:  433 PAASDMASIFFSLVKPSVSVAFYVARLLRYVHVSPSVFIVALVYLDRLGAGDARLLLTPLNMHRLLLAAVTLASKFVEDRAHRNSWLARVGGIPSQTEMNRLEVETLRRLDWRLAVSPDVFDMYRRNLALWAAASDIELPAGAGGRAPAARAASPAEYARGEAAAGRA 600          
BLAST of Gvermi12179.t1 vs. uniprot
Match: A0A6S7MDM2_LACSI (Uncharacterized protein n=2 Tax=Lactuca TaxID=4235 RepID=A0A6S7MDM2_LACSI)

HSP 1 Score: 110 bits (276), Expect = 8.700e-25
Identity = 56/142 (39.44%), Postives = 91/142 (64.08%), Query Frame = 0
Query:  125 EFVEAASQLLDRTAAMNDNTFPLPLYSEPESVFFSVVKPEIPTKEYMKRLVTYTHCSPAAFILMLVYLERVANANKKLVVTPYNMHRLLITALTLACKNLDDQCFANAHYAKVGGIPTVREMNRLELQFLKYLKYVLFVKRE 266
            + +   S LL R A  ND     PL+++  S+F+ +++P I  ++Y++R+  Y +CSP+ +++  VYL+R   +   L +  +N+HRLL+T++ ++ K +DD CF NA+YAKVGGI TV E+N LE+ FL  L + L V  E
Sbjct:   29 KLINLLSSLLQRAAESND--LNRPLHTQKISIFYGLIRPNISIEKYLERIFRYANCSPSCYVVAYVYLDRFVKSQPFLPINSFNVHRLLVTSVLISIKFMDDICFNNAYYAKVGGISTV-EINLLEVDFLFGLGFQLNVTPE 167          
BLAST of Gvermi12179.t1 vs. uniprot
Match: A0A1X6NX37_PORUM (Uncharacterized protein n=1 Tax=Porphyra umbilicalis TaxID=2786 RepID=A0A1X6NX37_PORUM)

HSP 1 Score: 108 bits (270), Expect = 1.240e-24
Identity = 54/113 (47.79%), Postives = 76/113 (67.26%), Query Frame = 0
Query:  147 LPLYSEPESVFFSVVKPEIPTKEYMKRLVTYTHCSPAAFILMLVYLERVANANKKLVVTPYNMHRLLITALTLACKNLDDQCFANAHYAKVGGIPTVREMNRLELQFLKYLKY 259
            LP + E  S FFSV  P++PT  Y+ RLVTY  CSP    + LV L+R A A+ +L V+ YN+HRLL+TA+ LA K+++D+ FANAH+A +GG+    EM +LE   L  L++
Sbjct:   13 LPGWQEDISAFFSVSIPQMPTAAYVDRLVTYCKCSPTVLTVALVLLDRCAAADSRLAVSGYNLHRLLVTAVMLASKSVEDRTFANAHFAVIGGVEGTAEMAKLERLMLHALQW 125          
BLAST of Gvermi12179.t1 vs. uniprot
Match: A0A103YJB4_CYNCS (Cyclin n=1 Tax=Cynara cardunculus var. scolymus TaxID=59895 RepID=A0A103YJB4_CYNCS)

HSP 1 Score: 108 bits (270), Expect = 3.670e-24
Identity = 56/137 (40.88%), Postives = 86/137 (62.77%), Query Frame = 0
Query:  127 VEAASQLLDRTAAMNDNTFPLPLYSEPESVFFSVVKPEIPTKEYMKRLVTYTHCSPAAFILMLVYLERVANANKKLVVTPYNMHRLLITALTLACKNLDDQCFANAHYAKVGGIPTVREMNRLELQFLKYLKYVLFV 263
            +   S LL R A  ND  F  PL ++  SVF++++KP I    Y++++  Y +CSP+ F++  +YL+R A     L +   N+HRLL+T++ ++ K +DD C+ NA+YAKVGGI T  E+N LE+ FL  L + L V
Sbjct:   10 INLLSSLLQRVAESND--FERPLNTQKISVFYALIKPNISIGRYLEQIFKYANCSPSCFVVAYIYLDRFAKKQPLLPINSLNVHRLLVTSVLISIKFMDDXCYNNAYYAKVGGISTA-EINLLEVDFLFGLGFQLNV 143          
BLAST of Gvermi12179.t1 vs. uniprot
Match: A0A7S4C8K9_9EUGL (Hypothetical protein n=1 Tax=Eutreptiella gymnastica TaxID=73025 RepID=A0A7S4C8K9_9EUGL)

HSP 1 Score: 109 bits (272), Expect = 4.080e-24
Identity = 65/186 (34.95%), Postives = 97/186 (52.15%), Query Frame = 0
Query:  126 FVEAASQLLDRTAAMNDNTFPLPLYSEPESVFFSVVKPEIPTKEYMKRLVTYTHCSPAAFILMLVYLERVANANKKLVVTPYNMHRLLITALTLACKNLDDQCFANAHYAKVGGIPTVREMNRLELQFLKYLKYVLFVKREEHDRKIAQLFSVESDS--------PKSIHESSLAPHPGAARLSHD 303
            FV   + +L+     N     +   SE   VF S+  P I T +Y+ R+V Y +CS   FI  L+YL+R+  ANK   +TPYN+HRLLIT++ LA K  DD  ++NA+Y+ +GGI    E+N+LE  FL  + + LFV  E +D+    L    S +        P    ++  +   GA  +  D
Sbjct:   36 FVPVIASVLNHITTRNQE---ITCTSEKLKVFHSLKVPPIGTSDYLNRIVKYAYCSGECFIFALIYLDRLITANKNCHITPYNVHRLLITSVLLAAKARDDTYYSNAYYSAIGGISNA-EINKLEGTFLVLVDFNLFVSPETYDQYKTYLMQHSSSTRDAPAMGPPSKAPQACPSSSTGATAMDED 217          
BLAST of Gvermi12179.t1 vs. uniprot
Match: A0A6J1JX61_CUCMA (Cyclin n=3 Tax=Cucurbita TaxID=3660 RepID=A0A6J1JX61_CUCMA)

HSP 1 Score: 104 bits (259), Expect = 1.260e-22
Identity = 56/133 (42.11%), Postives = 84/133 (63.16%), Query Frame = 0
Query:  131 SQLLDRTAAMNDNTFPLPLYSEPESVFFSVVKPEIPTKEYMKRLVTYTHCSPAAFILMLVYLERVANANKKLVVTPYNMHRLLITALTLACKNLDDQCFANAHYAKVGGIPTVREMNRLELQFLKYLKYVLFV 263
            S LL R +  ND +  L   ++  S F  + KP I  + Y++R+  Y +CSP+ F++  VYL+R+   +  L +  +N+HRLLIT++ ++ K LDD C+ NA+YAKVGGI T+ EMN LE+ FL  L + L V
Sbjct:   22 SSLLQRVSESNDQSHELHSAAKV-SAFHGLTKPTISIQTYLERIFKYANCSPSCFVVAYVYLDRLVQRHPSLPIDSFNVHRLLITSVLVSAKFLDDLCYNNAYYAKVGGISTM-EMNLLEIDFLFGLGFQLNV 152          
BLAST of Gvermi12179.t1 vs. uniprot
Match: A0C9U1_PARTE (Cyclin n=1 Tax=Paramecium tetraurelia TaxID=5888 RepID=A0C9U1_PARTE)

HSP 1 Score: 102 bits (255), Expect = 1.730e-22
Identity = 51/138 (36.96%), Postives = 82/138 (59.42%), Query Frame = 0
Query:  131 SQLLDRTAAMNDNTFPLPLYSEPESVFFSVVKPEIPTKEYMKRLVTYTHCSPAAFILMLVYLERVANANKKLVVTPYNMHRLLITALTLACKNLDDQCFANAHYAKVGGIPTVREMNRLELQFLKYLKYVLFVKREEH 268
            S +LD      D+     L  E  S+F S+  P I    Y++R+  YTHCS   F++ L+YL+R+   +  LV+  + +HR L+ A+  A K  DD  + N +YAK+GGI  V+E+N+LE +FL+Y+ Y LF+  +++
Sbjct:   12 SNILDEIIKETDS-----LELESNSIFHSIAAPAISIHNYLQRISKYTHCSEQCFVVALIYLDRLQEKHANLVLNSHCIHRFLLLAIVTAIKFQDDDYYKNEYYAKIGGI-NVKEINKLEQEFLEYMNYELFIDEQQY 143          
BLAST of Gvermi12179.t1 vs. uniprot
Match: A0A7S0BL77_9RHOD (Cyclin n=1 Tax=Rhodosorus marinus TaxID=101924 RepID=A0A7S0BL77_9RHOD)

HSP 1 Score: 103 bits (258), Expect = 2.180e-22
Identity = 52/126 (41.27%), Postives = 82/126 (65.08%), Query Frame = 0
Query:  156 VFFSVVKPEIPTKEYMKRLVTYTHCSPAAFILMLVYLERVANANKKLVVTPYNMHRLLITALTLACKNLDDQCFANAHYAKVGGIPTVREMNRLELQFLKYLKYVLFVKREEHDRKIAQLFSVESD 281
            +F+S  K       Y++RL+ Y  CS +AF+LMLVY++RV +    + ++ YN+HRL +TAL LA K L+D+   N++YA+VGGI T++EMN+LE   L  L + L+V  EE D   + ++ V+ +
Sbjct:   80 IFYSSHKQSFSLAFYIRRLIDYCGCSNSAFVLMLVYMDRVLSLQPLISLSEYNIHRLTMTALVLATKYLEDEVRTNSYYARVGGISTMKEMNKLEGAMLSILNFDLYVDPEEFDIYQSFIYDVKGN 205          
The following BLAST results are available for this feature:
BLAST of Gvermi12179.t1 vs. uniprot
Analysis Date: 2022-06-02 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A2V3J5L2_9FLOR5.580e-7071.17Cyclin-U4-1 n=1 Tax=Gracilariopsis chorda TaxID=44... [more]
A0A2V3II09_9FLOR2.190e-5962.65Cyclin-U4-1 n=1 Tax=Gracilariopsis chorda TaxID=44... [more]
A0A1X6NWM5_PORUM2.620e-2540.48Uncharacterized protein n=1 Tax=Porphyra umbilical... [more]
A0A6S7MDM2_LACSI8.700e-2539.44Uncharacterized protein n=2 Tax=Lactuca TaxID=4235... [more]
A0A1X6NX37_PORUM1.240e-2447.79Uncharacterized protein n=1 Tax=Porphyra umbilical... [more]
A0A103YJB4_CYNCS3.670e-2440.88Cyclin n=1 Tax=Cynara cardunculus var. scolymus Ta... [more]
A0A7S4C8K9_9EUGL4.080e-2434.95Hypothetical protein n=1 Tax=Eutreptiella gymnasti... [more]
A0A6J1JX61_CUCMA1.260e-2242.11Cyclin n=3 Tax=Cucurbita TaxID=3660 RepID=A0A6J1JX... [more]
A0C9U1_PARTE1.730e-2236.96Cyclin n=1 Tax=Paramecium tetraurelia TaxID=5888 R... [more]
A0A7S0BL77_9RHOD2.180e-2241.27Cyclin n=1 Tax=Rhodosorus marinus TaxID=101924 Rep... [more]

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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-06-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR013922Cyclin PHO80-likePFAMPF08613Cyclincoord: 151..259
e-value: 7.9E-30
score: 104.3
IPR013922Cyclin PHO80-likePANTHERPTHR15615UNCHARACTERIZEDcoord: 125..277
NoneNo IPR availableGENE3D1.10.472.10coord: 116..293
e-value: 6.4E-43
score: 148.7
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 51..75
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 1..22
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 55..71
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 1..21
NoneNo IPR availablePHOBIUSTRANSMEMBRANETransmembrane regioncoord: 174..192
NoneNo IPR availablePHOBIUSNON_CYTOPLASMIC_DOMAINNon cytoplasmic domaincoord: 193..406
NoneNo IPR availablePHOBIUSCYTOPLASMIC_DOMAINCytoplasmic domaincoord: 1..173
IPR036915Cyclin-like superfamilySUPERFAMILY47954Cyclin-likecoord: 169..259

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
ScGOVlb_3404contigScGOVlb_3404:3701636..3702856 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-06-01
Diamond blastp: OGS1.0 vs UniRef902022-06-02
Gracilaria vermiculophylla HapMaleFtJ_2017 male OGS1.02022-05-09
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
Gvermi12179.t1Gvermi12179.t1Gracilaria vermiculophylla HapMaleFtJ_2017 malemRNAScGOVlb_3404 3701636..3702856 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>Gvermi12179.t1 ID=Gvermi12179.t1|Name=Gvermi12179.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=polypeptide|length=407bp
MPSDVTMTQSGTRSVSSRSVAAPPMPVTVPPCAPGSHALYGAATPAHIRC
QFSYQQPPPPHPRPHPQLKTQPQPISQPHVVHGLPVASHSQHVPSAHPAH
PALSLSSQSPACGAKAFVGSLSKDEFVEAASQLLDRTAAMNDNTFPLPLY
SEPESVFFSVVKPEIPTKEYMKRLVTYTHCSPAAFILMLVYLERVANANK
KLVVTPYNMHRLLITALTLACKNLDDQCFANAHYAKVGGIPTVREMNRLE
LQFLKYLKYVLFVKREEHDRKIAQLFSVESDSPKSIHESSLAPHPGAARL
SHDGKGMAVGPRAYITAAGLRSGGGKISGGTDGRRYAEGGSEAYDRCLRN
SGGMMPPIHNSAQRRPACSAKRFGAVAVNAMEVCRTAAGGEATHAPLASG
RDACRP*
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR013922Cyclin_PHO80-like
IPR036915Cyclin-like_sf