Gvermi12179.t1 (mRNA) Gracilaria vermiculophylla HapMaleFtJ_2017 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGvermi12179.t1
Unique NameGvermi12179.t1
TypemRNA
OrganismGracilaria vermiculophylla HapMaleFtJ_2017 male (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
Sequence length407
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
ScGOVlb_3404contigScGOVlb_3404:3701636..3702856 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria vermiculophylla HapMaleFtJ_2017 male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog264402.Cagra.0239s0025.1.p
PFAMsCyclin
Max annot lvl35493|Streptophyta
Evalue6.13e-24
EggNOG OGsKOG1674@1|root,KOG1674@2759|Eukaryota,37S1J@33090|Viridiplantae,3GAQ0@35493|Streptophyta,3HTTV@3699|Brassicales
DescriptionCyclin
COG categoryD
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Gvermi12179Gvermi12179Gracilaria vermiculophylla HapMaleFtJ_2017 malegeneScGOVlb_3404 3701636..3702856 +


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi12179.t1.start1Gvermi12179.t1.start1Gracilaria vermiculophylla HapMaleFtJ_2017 malestart_codonScGOVlb_3404 3701636..3701638 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi12179.t1.CDS1Gvermi12179.t1.CDS1Gracilaria vermiculophylla HapMaleFtJ_2017 maleCDSScGOVlb_3404 3701636..3702856 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi12179.t1.exon1Gvermi12179.t1.exon1Gracilaria vermiculophylla HapMaleFtJ_2017 maleexonScGOVlb_3404 3701636..3702856 +


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi12179.t1.stop1Gvermi12179.t1.stop1Gracilaria vermiculophylla HapMaleFtJ_2017 malestop_codonScGOVlb_3404 3702854..3702856 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi12179.t1Gvermi12179.t1Gracilaria vermiculophylla HapMaleFtJ_2017 malepolypeptideScGOVlb_3404 3701636..3702856 +


Sequences
The following sequences are available for this feature:

mRNA sequence

>Gvermi12179.t1 ID=Gvermi12179.t1|Name=Gvermi12179.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=407bp
MPSDVTMTQSGTRSVSSRSVAAPPMPVTVPPCAPGSHALYGAATPAHIRC
QFSYQQPPPPHPRPHPQLKTQPQPISQPHVVHGLPVASHSQHVPSAHPAH
PALSLSSQSPACGAKAFVGSLSKDEFVEAASQLLDRTAAMNDNTFPLPLY
SEPESVFFSVVKPEIPTKEYMKRLVTYTHCSPAAFILMLVYLERVANANK
KLVVTPYNMHRLLITALTLACKNLDDQCFANAHYAKVGGIPTVREMNRLE
LQFLKYLKYVLFVKREEHDRKIAQLFSVESDSPKSIHESSLAPHPGAARL
SHDGKGMAVGPRAYITAAGLRSGGGKISGGTDGRRYAEGGSEAYDRCLRN
SGGMMPPIHNSAQRRPACSAKRFGAVAVNAMEVCRTAAGGEATHAPLASG
RDACRP*
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spliced messenger RNA

>Gvermi12179.t1 ID=Gvermi12179.t1|Name=Gvermi12179.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=1221bp|location=Sequence derived from alignment at ScGOVlb_3404:3701636..3702856+ (Gracilaria vermiculophylla HapMaleFtJ_2017 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGCCGAGTGATGTCACCATGACTCAATCCGGCACGCGCTCGGTTTCTTC
TCGTTCTGTTGCCGCGCCGCCAATGCCAGTCACTGTGCCCCCGTGTGCAC
CGGGGTCGCACGCACTGTACGGCGCCGCCACCCCGGCCCATATCCGCTGC
CAGTTCTCATATCAGCAGCCGCCGCCGCCTCACCCACGGCCTCACCCGCA
GCTTAAAACACAGCCGCAGCCTATCTCACAACCACACGTCGTTCACGGTC
TTCCTGTCGCTTCCCATTCTCAGCACGTGCCATCCGCACACCCTGCACAC
CCTGCGCTGAGTTTGTCGTCTCAGTCGCCTGCGTGCGGCGCCAAGGCTTT
TGTGGGCTCTTTGAGCAAGGATGAGTTTGTGGAAGCTGCTTCACAGCTCT
TGGACCGCACGGCGGCTATGAATGACAACACGTTTCCGCTGCCGCTGTAT
TCGGAGCCCGAAAGCGTGTTTTTCAGTGTGGTCAAGCCGGAAATTCCTAC
AAAGGAGTACATGAAGCGACTGGTGACGTACACTCACTGCAGCCCCGCTG
CGTTTATTTTGATGTTGGTGTATCTGGAGCGAGTGGCCAACGCAAATAAG
AAGCTGGTGGTCACACCGTACAATATGCATCGGTTGCTGATAACGGCGCT
AACGTTGGCGTGCAAGAACTTGGACGATCAATGCTTTGCTAACGCTCACT
ACGCAAAGGTTGGCGGTATTCCCACGGTACGTGAAATGAATCGCTTGGAA
CTGCAGTTTCTCAAATACTTGAAATACGTGTTGTTTGTGAAACGCGAGGA
ACATGACCGAAAGATAGCTCAATTGTTCTCAGTTGAGTCCGACTCACCAA
AATCAATTCACGAGTCGTCGCTGGCGCCGCATCCGGGCGCGGCACGACTC
AGCCATGACGGGAAAGGAATGGCAGTTGGTCCGCGTGCGTACATCACGGC
GGCAGGACTGCGCTCGGGCGGAGGGAAGATAAGTGGCGGAACGGACGGCA
GAAGGTATGCTGAGGGCGGCAGCGAGGCGTACGACCGGTGTCTGAGGAAC
AGCGGTGGCATGATGCCACCCATTCACAACTCTGCACAGCGGCGCCCGGC
GTGCTCGGCCAAGCGCTTCGGCGCTGTCGCCGTCAACGCCATGGAGGTCT
GCCGCACCGCAGCCGGCGGGGAAGCAACTCATGCGCCATTGGCATCTGGA
AGGGACGCCTGCAGGCCATGA
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protein sequence of Gvermi12179.t1

>Gvermi12179.t1 ID=Gvermi12179.t1|Name=Gvermi12179.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=polypeptide|length=407bp
MPSDVTMTQSGTRSVSSRSVAAPPMPVTVPPCAPGSHALYGAATPAHIRC
QFSYQQPPPPHPRPHPQLKTQPQPISQPHVVHGLPVASHSQHVPSAHPAH
PALSLSSQSPACGAKAFVGSLSKDEFVEAASQLLDRTAAMNDNTFPLPLY
SEPESVFFSVVKPEIPTKEYMKRLVTYTHCSPAAFILMLVYLERVANANK
KLVVTPYNMHRLLITALTLACKNLDDQCFANAHYAKVGGIPTVREMNRLE
LQFLKYLKYVLFVKREEHDRKIAQLFSVESDSPKSIHESSLAPHPGAARL
SHDGKGMAVGPRAYITAAGLRSGGGKISGGTDGRRYAEGGSEAYDRCLRN
SGGMMPPIHNSAQRRPACSAKRFGAVAVNAMEVCRTAAGGEATHAPLASG
RDACRP*
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mRNA from alignment at ScGOVlb_3404:3701636..3702856+

Legend: start_codonpolypeptideCDSexonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Gvermi12179.t1 ID=Gvermi12179.t1|Name=Gvermi12179.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=1221bp|location=Sequence derived from alignment at ScGOVlb_3404:3701636..3702856+ (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
ATGCCGAGTGATGTCACCATGACTCAATCCGGCACGCGCTCGGTTTCTTC
TCGTTCTGTTGCCGCGCCGCCAATGCCAGTCACTGTGCCCCCGTGTGCAC
CGGGGTCGCACGCACTGTACGGCGCCGCCACCCCGGCCCATATCCGCTGC
CAGTTCTCATATCAGCAGCCGCCGCCGCCTCACCCACGGCCTCACCCGCA
GCTTAAAACACAGCCGCAGCCTATCTCACAACCACACGTCGTTCACGGTC
TTCCTGTCGCTTCCCATTCTCAGCACGTGCCATCCGCACACCCTGCACAC
CCTGCGCTGAGTTTGTCGTCTCAGTCGCCTGCGTGCGGCGCCAAGGCTTT
TGTGGGCTCTTTGAGCAAGGATGAGTTTGTGGAAGCTGCTTCACAGCTCT
TGGACCGCACGGCGGCTATGAATGACAACACGTTTCCGCTGCCGCTGTAT
TCGGAGCCCGAAAGCGTGTTTTTCAGTGTGGTCAAGCCGGAAATTCCTAC
AAAGGAGTACATGAAGCGACTGGTGACGTACACTCACTGCAGCCCCGCTG
CGTTTATTTTGATGTTGGTGTATCTGGAGCGAGTGGCCAACGCAAATAAG
AAGCTGGTGGTCACACCGTACAATATGCATCGGTTGCTGATAACGGCGCT
AACGTTGGCGTGCAAGAACTTGGACGATCAATGCTTTGCTAACGCTCACT
ACGCAAAGGTTGGCGGTATTCCCACGGTACGTGAAATGAATCGCTTGGAA
CTGCAGTTTCTCAAATACTTGAAATACGTGTTGTTTGTGAAACGCGAGGA
ACATGACCGAAAGATAGCTCAATTGTTCTCAGTTGAGTCCGACTCACCAA
AATCAATTCACGAGTCGTCGCTGGCGCCGCATCCGGGCGCGGCACGACTC
AGCCATGACGGGAAAGGAATGGCAGTTGGTCCGCGTGCGTACATCACGGC
GGCAGGACTGCGCTCGGGCGGAGGGAAGATAAGTGGCGGAACGGACGGCA
GAAGGTATGCTGAGGGCGGCAGCGAGGCGTACGACCGGTGTCTGAGGAAC
AGCGGTGGCATGATGCCACCCATTCACAACTCTGCACAGCGGCGCCCGGC
GTGCTCGGCCAAGCGCTTCGGCGCTGTCGCCGTCAACGCCATGGAGGTCT
GCCGCACCGCAGCCGGCGGGGAAGCAACTCATGCGCCATTGGCATCTGGA
AGGGACGCCTGCAGGCCATGA
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Coding sequence (CDS) from alignment at ScGOVlb_3404:3701636..3702856+

>Gvermi12179.t1 ID=Gvermi12179.t1|Name=Gvermi12179.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=CDS|length=1221bp|location=Sequence derived from alignment at ScGOVlb_3404:3701636..3702856+ (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
ATGCCGAGTGATGTCACCATGACTCAATCCGGCACGCGCTCGGTTTCTTC
TCGTTCTGTTGCCGCGCCGCCAATGCCAGTCACTGTGCCCCCGTGTGCAC
CGGGGTCGCACGCACTGTACGGCGCCGCCACCCCGGCCCATATCCGCTGC
CAGTTCTCATATCAGCAGCCGCCGCCGCCTCACCCACGGCCTCACCCGCA
GCTTAAAACACAGCCGCAGCCTATCTCACAACCACACGTCGTTCACGGTC
TTCCTGTCGCTTCCCATTCTCAGCACGTGCCATCCGCACACCCTGCACAC
CCTGCGCTGAGTTTGTCGTCTCAGTCGCCTGCGTGCGGCGCCAAGGCTTT
TGTGGGCTCTTTGAGCAAGGATGAGTTTGTGGAAGCTGCTTCACAGCTCT
TGGACCGCACGGCGGCTATGAATGACAACACGTTTCCGCTGCCGCTGTAT
TCGGAGCCCGAAAGCGTGTTTTTCAGTGTGGTCAAGCCGGAAATTCCTAC
AAAGGAGTACATGAAGCGACTGGTGACGTACACTCACTGCAGCCCCGCTG
CGTTTATTTTGATGTTGGTGTATCTGGAGCGAGTGGCCAACGCAAATAAG
AAGCTGGTGGTCACACCGTACAATATGCATCGGTTGCTGATAACGGCGCT
AACGTTGGCGTGCAAGAACTTGGACGATCAATGCTTTGCTAACGCTCACT
ACGCAAAGGTTGGCGGTATTCCCACGGTACGTGAAATGAATCGCTTGGAA
CTGCAGTTTCTCAAATACTTGAAATACGTGTTGTTTGTGAAACGCGAGGA
ACATGACCGAAAGATAGCTCAATTGTTCTCAGTTGAGTCCGACTCACCAA
AATCAATTCACGAGTCGTCGCTGGCGCCGCATCCGGGCGCGGCACGACTC
AGCCATGACGGGAAAGGAATGGCAGTTGGTCCGCGTGCGTACATCACGGC
GGCAGGACTGCGCTCGGGCGGAGGGAAGATAAGTGGCGGAACGGACGGCA
GAAGGTATGCTGAGGGCGGCAGCGAGGCGTACGACCGGTGTCTGAGGAAC
AGCGGTGGCATGATGCCACCCATTCACAACTCTGCACAGCGGCGCCCGGC
GTGCTCGGCCAAGCGCTTCGGCGCTGTCGCCGTCAACGCCATGGAGGTCT
GCCGCACCGCAGCCGGCGGGGAAGCAACTCATGCGCCATTGGCATCTGGA
AGGGACGCCTGCAGGCCATGA
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