Gvermi12377.t1 (mRNA) Gracilaria vermiculophylla HapMaleFtJ_2017 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGvermi12377.t1
Unique NameGvermi12377.t1
TypemRNA
OrganismGracilaria vermiculophylla HapMaleFtJ_2017 male (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
Sequence length121
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
ScGOVlb_3404contigScGOVlb_3404:4434444..4434915 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria vermiculophylla HapMaleFtJ_2017 male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog5286.M7WTJ8
PFAMsGATA,PAS_3,PAS_9
Max annot lvl4751|Fungi
KEGG koko:K14858
GOsGO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0044424,GO:0044464
Evalue1.11e-06
EggNOG OGsCOG2202@1|root,2QU3S@2759|Eukaryota,3978Y@33154|Opisthokonta,3NW67@4751|Fungi,3UY06@5204|Basidiomycota,2YD0R@29000|Pucciniomycotina
DescriptionPAS fold
COG categoryT
BRITEko00000,ko03009
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Gvermi12377Gvermi12377Gracilaria vermiculophylla HapMaleFtJ_2017 malegeneScGOVlb_3404 4434444..4434915 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi12377.t1Gvermi12377.t1Gracilaria vermiculophylla HapMaleFtJ_2017 malepolypeptideScGOVlb_3404 4434444..4434915 +


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi12377.t1.start1Gvermi12377.t1.start1Gracilaria vermiculophylla HapMaleFtJ_2017 malestart_codonScGOVlb_3404 4434444..4434446 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi12377.t1.CDS1Gvermi12377.t1.CDS1Gracilaria vermiculophylla HapMaleFtJ_2017 maleCDSScGOVlb_3404 4434444..4434534 +
Gvermi12377.t1.CDS2Gvermi12377.t1.CDS2Gracilaria vermiculophylla HapMaleFtJ_2017 maleCDSScGOVlb_3404 4434644..4434915 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi12377.t1.exon1Gvermi12377.t1.exon1Gracilaria vermiculophylla HapMaleFtJ_2017 maleexonScGOVlb_3404 4434444..4434534 +
Gvermi12377.t1.exon2Gvermi12377.t1.exon2Gracilaria vermiculophylla HapMaleFtJ_2017 maleexonScGOVlb_3404 4434644..4434915 +


The following intron feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi12377.t1.intron1Gvermi12377.t1.intron1Gracilaria vermiculophylla HapMaleFtJ_2017 maleintronScGOVlb_3404 4434535..4434643 +


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi12377.t1.stop1Gvermi12377.t1.stop1Gracilaria vermiculophylla HapMaleFtJ_2017 malestop_codonScGOVlb_3404 4434913..4434915 +


Sequences
The following sequences are available for this feature:

mRNA sequence

>Gvermi12377.t1 ID=Gvermi12377.t1|Name=Gvermi12377.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=121bp
MAAAGASAAVPRVCQHCGKTQTSQWRYGRNDKMLLCNACGIKWKRNNPRA
GADKLKPGPKGADAAAASRPMELSALPPPDEPSRRQPRSSGIAIYELLND
ECAACGVAAAKTHARPPKKQ*
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spliced messenger RNA

>Gvermi12377.t1 ID=Gvermi12377.t1|Name=Gvermi12377.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=363bp|location=Sequence derived from alignment at ScGOVlb_3404:4434444..4434915+ (Gracilaria vermiculophylla HapMaleFtJ_2017 male)|Notes=Excludes all bases but those of type(s): exon.  
atggccgccgccggcgcctcggcggccgtgccgcgcGTATGCCAGCACTG
CGGCAAGACGCAGACGTCGCAGTGGAGGTACGGCCGAAATGACAAGATGC
TGCTGTGCAACGCGTGCGGCATCAAGTGGAAGCGCAACAACCCGCGCGCG
GGCGCCGACAAGCTCAAGCCGGGGCCCAAGGGcgccgacgccgccgccgc
gtcgcgccccatggagctcagcgcgctgccgccgccggacgagccgtcgc
gccgccagccgcGCTCGTCGGGCATCGCCATCTACGAGCTGCTCAACGAC
GAGTGCGCCGCGTGCGGCGTGGCCGCCGCCAAGACGCACGCGCGCCCGCC
CAAGAAGCAGTAG
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protein sequence of Gvermi12377.t1

>Gvermi12377.t1 ID=Gvermi12377.t1|Name=Gvermi12377.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=polypeptide|length=121bp
MAAAGASAAVPRVCQHCGKTQTSQWRYGRNDKMLLCNACGIKWKRNNPRA
GADKLKPGPKGADAAAASRPMELSALPPPDEPSRRQPRSSGIAIYELLND
ECAACGVAAAKTHARPPKKQ*
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mRNA from alignment at ScGOVlb_3404:4434444..4434915+

Legend: polypeptidestart_codonCDSexonintronstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Gvermi12377.t1 ID=Gvermi12377.t1|Name=Gvermi12377.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=472bp|location=Sequence derived from alignment at ScGOVlb_3404:4434444..4434915+ (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
atggccgccgccggcgcctcggcggccgtgccgcgcGTATGCCAGCACTG
CGGCAAGACGCAGACGTCGCAGTGGAGGTACGGCCGAAATGGTAAGCTTG
CccgcgccgcgccgcgccgcgccgcgcgcgcgcgccCCCCGGCCGCCGGA
CTCACCTTGCCCCCGTTGTGTGGTTGCGCGCCGCGTGGGCGACCGCGCAG
ACAAGATGCTGCTGTGCAACGCGTGCGGCATCAAGTGGAAGCGCAACAAC
CCGCGCGCGGGCGCCGACAAGCTCAAGCCGGGGCCCAAGGGcgccgacgc
cgccgccgcgtcgcgccccatggagctcagcgcgctgccgccgccggacg
agccgtcgcgccgccagccgcGCTCGTCGGGCATCGCCATCTACGAGCTG
CTCAACGACGAGTGCGCCGCGTGCGGCGTGGCCGCCGCCAAGACGCACGC
GCGCCCGCCCAAGAAGCAGTAG
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Coding sequence (CDS) from alignment at ScGOVlb_3404:4434444..4434915+

>Gvermi12377.t1 ID=Gvermi12377.t1|Name=Gvermi12377.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=CDS|length=363bp|location=Sequence derived from alignment at ScGOVlb_3404:4434444..4434915+ (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
atggccgccgccggcgcctcggcggccgtgccgcgcGTATGCCAGCACTG
CGGCAAGACGCAGACGTCGCAGTGGAGGTACGGCCGAAATGACAAGATGC
TGCTGTGCAACGCGTGCGGCATCAAGTGGAAGCGCAACAACCCGCGCGCG
GGCGCCGACAAGCTCAAGCCGGGGCCCAAGGGcgccgacgccgccgccgc
gtcgcgccccatggagctcagcgcgctgccgccgccggacgagccgtcgc
gccgccagccgcGCTCGTCGGGCATCGCCATCTACGAGCTGCTCAACGAC
GAGTGCGCCGCGTGCGGCGTGGCCGCCGCCAAGACGCACGCGCGCCCGCC
CAAGAAGCAGTAG
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