Gvermi12166.t1 (polypeptide) Gracilaria vermiculophylla HapMaleFtJ_2017 male

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NameGvermi12166.t1
Unique NameGvermi12166.t1
Typepolypeptide
OrganismGracilaria vermiculophylla HapMaleFtJ_2017 male (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
Sequence length375
Homology
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BLAST of Gvermi12166.t1 vs. uniprot
Match: A0A2V3J6C9_9FLOR (Uncharacterized protein n=1 Tax=Gracilariopsis chorda TaxID=448386 RepID=A0A2V3J6C9_9FLOR)

HSP 1 Score: 252 bits (643), Expect = 1.850e-74
Identity = 154/365 (42.19%), Postives = 212/365 (58.08%), Query Frame = 0 
Query:    1 MAAALGHASVLPLLVSALNAFADDLPLVKTLVLLARSLLLHHDPNRAAFCRLHGLPALAAAMARFPHRQSIQSSAAALIASVCYASPDRRRLACQCNLPSLLLQLLARFPNPAPATLHANACMALRNLTLEPTVCTLVLDHPDALRSVVAVIAPRANTSAVEQALGVCLNVLTASDQSTPHPHAAAALQRACPLASAQVARFLAATPSDSLRSARCHELAFAVLRACEPLERPRAPPRQRKEWMQLAVAYATAYASNRSAHSAAVVSSACLFVRTAVIDADNRALFAQLRRGVPALVRSVAFLARSPRHVEHALLALGNALFDSPPAKLRACQWGALRAVAAVLDANAAAPAPVEAALMAVHALC 365
            MAA +G    +  LV   N F  D  LVK +VLL RSL++  +PNR  FC   G+  L +AM  FP R S+Q SA ALIAS+CY S  RR L     +  LL+++L RF       + +NACMALRN++LE   C  +L H  +LR+V +++   +  SA E+A+GVCLN++T  +         A L +        V +F++ T        +CHELAF +LR C+ L       + + E ++L V YA  Y +N S+ S  VVSS C+ +R  VIDA +R  F ++ + +P LVR VAFL   P HVE +LLALGNA+FD+P  KLRAC+ GALR +   + AN  A A  E+ LMA+ ALC
Sbjct:  128 MAAYIGQIGAMQHLVEIGNTFLKDEALVKNVVLLMRSLVIL-EPNRINFCEHGGIGMLTSAMIEFPARASLQCSATALIASICYESESRRLLVTANGIVPLLIRILVRFQESGNGKVLSNACMALRNISLESIACEEILFHDSSLRNVCSIVVAESAPSAAEEAIGVCLNIVTVLECIKD----TAELHKIVQTVLHAVIKFMSKTAMSFRTHVKCHELAFGLLRVCQSLPAENKDTKVKSEILRLTVTYAIEYTTNGSSRSVQVVSSVCILIRKMVIDACSRKTFGEIPQSIPTLVRCVAFLKNHPTHVEQSLLALGNAVFDAPVGKLRACESGALRIIGETMKANKNAAAVSESGLMAIQALC 487
The following BLAST results are available for this feature:
BLAST of Gvermi12166.t1 vs. uniprot
Analysis Date: 2022-06-02 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A2V3J6C9_9FLOR1.850e-7442.19Uncharacterized protein n=1 Tax=Gracilariopsis cho... [more]
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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-06-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR000225ArmadilloSMARTSM00185arm_5coord: 42..84
e-value: 21.0
score: 10.7
coord: 279..322
e-value: 6.0
score: 15.0
coord: 86..130
e-value: 0.079
score: 22.1
IPR011989Armadillo-like helicalGENE3D1.25.10.10coord: 1..373
e-value: 7.6E-17
score: 62.9
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDE_H_REGIONSignal peptide H-regioncoord: 3..14
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDE_C_REGIONSignal peptide C-regioncoord: 15..22
NoneNo IPR availablePHOBIUSNON_CYTOPLASMIC_DOMAINNon cytoplasmic domaincoord: 23..374
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDE_N_REGIONSignal peptide N-regioncoord: 1..2
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDESignal Peptidecoord: 1..22
IPR016024Armadillo-type foldSUPERFAMILY48371ARM repeatcoord: 11..369

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
ScGOVlb_3404contigScGOVlb_3404:3648348..3651434 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-06-01
Diamond blastp: OGS1.0 vs UniRef902022-06-02
Gracilaria vermiculophylla HapMaleFtJ_2017 male OGS1.02022-05-09
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
Gvermi12166.t1Gvermi12166.t1Gracilaria vermiculophylla HapMaleFtJ_2017 malemRNAScGOVlb_3404 3648348..3651434 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>Gvermi12166.t1 ID=Gvermi12166.t1|Name=Gvermi12166.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=polypeptide|length=375bp
MAAALGHASVLPLLVSALNAFADDLPLVKTLVLLARSLLLHHDPNRAAFC
RLHGLPALAAAMARFPHRQSIQSSAAALIASVCYASPDRRRLACQCNLPS
LLLQLLARFPNPAPATLHANACMALRNLTLEPTVCTLVLDHPDALRSVVA
VIAPRANTSAVEQALGVCLNVLTASDQSTPHPHAAAALQRACPLASAQVA
RFLAATPSDSLRSARCHELAFAVLRACEPLERPRAPPRQRKEWMQLAVAY
ATAYASNRSAHSAAVVSSACLFVRTAVIDADNRALFAQLRRGVPALVRSV
AFLARSPRHVEHALLALGNALFDSPPAKLRACQWGALRAVAAVLDANAAA
PAPVEAALMAVHALCAGCAATQPD*
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR000225Armadillo
IPR011989ARM-like
IPR016024ARM-type_fold