Gvermi12390.t1 (polypeptide) Gracilaria vermiculophylla HapMaleFtJ_2017 male

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NameGvermi12390.t1
Unique NameGvermi12390.t1
Typepolypeptide
OrganismGracilaria vermiculophylla HapMaleFtJ_2017 male (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
Sequence length297
Homology
BLAST of Gvermi12390.t1 vs. uniprot
Match: A0A2V3J407_9FLOR (Reactive Intermediate Deaminase A, chloroplastic n=1 Tax=Gracilariopsis chorda TaxID=448386 RepID=A0A2V3J407_9FLOR)

HSP 1 Score: 394 bits (1012), Expect = 1.740e-135
Identity = 214/292 (73.29%), Postives = 241/292 (82.53%), Query Frame = 0
Query:    8 FVSSFTPNGAYRINKF--SVS-SPKIQHSFARRPRITSVMTDNVRQHSDIKRFLPGPRFNQIVVHGGVVYLAGQVARGT-DGSVAGQTRAILQKIDSLLEQAGTDKSRLLTTNIWISDMSKFSEMNAEWEKWVDKDNMPVRACVQSTLADGSITVEIQATAALPSPAKIISTEEAAAAVGPYNQGVVVDDGTIYVSGCIGLMPRTAIMAGDTVEDQTKQALLNLKAIVEAAGATVQDIVKTTILLDDIADFAAVNSIYSKFFEGGSVPARSCFAAKQLPKAALVEIEAIAKL 295
            FVSSF P  A     F  SVS + + QH      R  +V+TD++   SDIKRFLPGPRFNQ+VV+ G+VYLAGQVAR T DGSV  QTR IL KID LLE AGT+KSRLLT NIW++D+SK  EMN EW KWVDKDNMPVRACVQS+L D SITVEIQATAAL SPA I+ TEEAAAAVGPYNQ VVVDDGT+YVSGCIGL+P+T IMAG +VE+QT+QAL N+KAIVEA GA+V  IVKTTILLDDI DFAAVN+IYS+FFEGG+VPARSCFAAKQLPK+ALVEIEAIAKL
Sbjct:    8 FVSSFVPRNALSATHFVRSVSWAWRAQHRTRSPARTKAVITDSMAGASDIKRFLPGPRFNQVVVYNGIVYLAGQVARDTPDGSVGAQTRQILAKIDRLLETAGTNKSRLLTANIWMTDISKAPEMNEEWAKWVDKDNMPVRACVQSSLLDDSITVEIQATAALSSPATIVKTEEAAAAVGPYNQAVVVDDGTVYVSGCIGLLPKTGIMAGASVEEQTEQALQNIKAIVEAVGASVHSIVKTTILLDDINDFAAVNAIYSRFFEGGAVPARSCFAAKQLPKSALVEIEAIAKL 299          
BLAST of Gvermi12390.t1 vs. uniprot
Match: R7QTC6_CHOCR (Uncharacterized protein n=1 Tax=Chondrus crispus TaxID=2769 RepID=R7QTC6_CHOCR)

HSP 1 Score: 306 bits (783), Expect = 2.000e-101
Identity = 157/245 (64.08%), Postives = 187/245 (76.33%), Query Frame = 0
Query:   51 HSDIKRFLPGPRFNQIVVHGGVVYLAGQVARGTDGSVAGQTRAILQKIDSLLEQAGTDKSRLLTTNIWISDMSKFSEMNAEWEKWVDKDNMPVRACVQSTLADGSITVEIQATAALPSPAKIISTEEAAAAVGPYNQGVVVDDGTIYVSGCIGLMPRTAIMAGDTVEDQTKQALLNLKAIVEAAGATVQDIVKTTILLDDIADFAAVNSIYSKFFEGGSVPARSCFAAKQLPKAALVEIEAIAKL 295
            H DI+R  PG RF+Q  +H G VYLAGQV R  D S  GQT  IL+K+D+LL +AGTDKSR+L+  +W++D+++  EMN  W+ WVDK NMPVRA VQS L    ITVEI   AALPSPAKI++T++AAAAVGPYNQGVVVDDGT+YVSGCIGL+P    M    VE QT+QAL N++AI+ + GA   DIVKT ILLDD+ADFA VN+IY  FF  G VPARSCFAAK+LPK ALVEIEA AKL
Sbjct:    3 HPDIRRLQPGARFHQATIHNGTVYLAGQVGRAADRSTYGQTEEILRKVDALLAEAGTDKSRVLSATVWMTDIAEADEMNRAWDAWVDKQNMPVRATVQSRLVADDITVEIGVIAALPSPAKILATDKAAAAVGPYNQGVVVDDGTVYVSGCIGLLPGDGGMVDGGVEGQTRQALENIRAILNSTGAGPNDIVKTGILLDDMADFAKVNAIYKDFFGAGDVPARSCFAAKELPKGALVEIEATAKL 247          
BLAST of Gvermi12390.t1 vs. uniprot
Match: A0A5J4Z3P0_PORPP (Reactive Intermediate Deaminase A, chloroplastic n=1 Tax=Porphyridium purpureum TaxID=35688 RepID=A0A5J4Z3P0_PORPP)

HSP 1 Score: 259 bits (663), Expect = 2.040e-82
Identity = 136/239 (56.90%), Postives = 180/239 (75.31%), Query Frame = 0
Query:   61 PRFNQIVVHGGVVYLAGQVARGT--DGSVAGQTRAILQKIDSLLEQAGTDKSRLLTTNIWISDMSKFSEMNAEWEKWVDKDNMPVRACVQSTLADGSITVEIQATAALPSP-AKIISTEEAAAAVGPYNQGVVVDDGTIYVSGCIGLMPRTAIMAGDTVEDQTKQALLNLKAIVEAAGAT-VQDIVKTTILLDDIADFAAVNSIYSKFFEGGSVPARSCFAAKQLPKAALVEIEAIAKL 295
            P FNQ+VVH G VY++GQV        +VA QT+++L KID+LL     DKSR+L+ +IW+SD+S  +EMN EWE+W+D  N PVRA V++ L    + VEIQ TAALP   ++I++T+ AAAAVGPYNQG+   DG +++SGCIGL P+T   AG T+E+QTKQ L NL AI++A GA   + I+KTTILLDD+ADFA VN++YS++F+G  VPAR+CFAAK LPK ALVEIEAIA++
Sbjct:   70 PLFNQLVVHNGTVYISGQVTADATKQTTVADQTKSVLDKIDNLLASVNIDKSRILSASIWLSDISTVAEMNKEWEQWLDVQNKPVRATVEAKLVRPELLVEIQVTAALPPRRSEIVATDLAAAAVGPYNQGIRTADGMLFISGCIGLSPKTGDFAGTTIEEQTKQVLANLDAILKAGGAKGPEQIIKTTILLDDMADFATVNTLYSEYFKGSRVPARACFAAKTLPKNALVEIEAIAEV 308          
BLAST of Gvermi12390.t1 vs. uniprot
Match: M2XYU2_GALSU (TdcF protein n=1 Tax=Galdieria sulphuraria TaxID=130081 RepID=M2XYU2_GALSU)

HSP 1 Score: 258 bits (658), Expect = 3.340e-81
Identity = 136/261 (52.11%), Postives = 176/261 (67.43%), Query Frame = 0
Query:   38 PRITSVMT-DNVRQHSDIKRFLPGPRFNQIVVHGGVVYLAGQVARGT-DGSVAGQTRAILQKIDSLLEQAGTDKSRLLTTNIWISDMSKFSEMNAEWEKWVDKDNMPVRACVQSTLADGSITVEIQATAALPSPAKIISTEEAAAAVGPYNQGVVVDDGTIYVSGCIGLMPRTAIMAGDTVEDQTKQALLNLKAIVEAAGATVQDIVKTTILLDDIADFAAVNSIYSKFFEGGSVPARSCFAAKQLPKAALVEIEAIAKLQ 296
            PR++S +T  +V   S IKR+  GP FNQ+V +  V YLAGQVA  T D +V GQ   I  +ID LL+ AGTDK+RLL+ N+W+ D+   +E N  W  W+D  N PVRA V++ L    + VE+Q TAALP     + T  AAAAVGPY+QG+V+D+GTIYVSGCIGL P+T  +   TV  Q KQAL N+K I+ AAGAT + + KT +LL +I DF  VN IY  FF  G+ P+RSCFA K+LPK ALVE E +A+L+
Sbjct:   82 PRMSSTLTGSDVVSQSSIKRYEEGPLFNQMVTYNDVAYLAGQVAPDTSDQTVKGQAEQIFARIDQLLKVAGTDKTRLLSANVWLKDIQHVAEFNEAWNSWIDSTNKPVRATVEAKLVRPELLVEVQVTAALPRRLTPVQTNLAAAAVGPYHQGIVLDNGTIYVSGCIGLNPQTGSLIDSTVVGQAKQALSNMKHILRAAGATPERVTKTLVLLKNIEDFERVNEIYKSFFNNGAYPSRSCFAVKELPKGALVEFECVAQLE 342          
BLAST of Gvermi12390.t1 vs. uniprot
Match: A0A7S1XBY1_9RHOD (Hypothetical protein n=1 Tax=Compsopogon caeruleus TaxID=31354 RepID=A0A7S1XBY1_9RHOD)

HSP 1 Score: 241 bits (616), Expect = 5.760e-76
Identity = 137/247 (55.47%), Postives = 169/247 (68.42%), Query Frame = 0
Query:   54 IKRFLPGPR----FNQIVVHGGVVYLAGQVARGTDGSVAGQTRAILQKIDSLLEQAGTDKSRLLTTNIWISDMSKFSEMNAEWEKWVDK-DNMPVRACVQSTLADGSITVEIQATAALPSPAKIISTEEAAAAVGPYNQGVVVDDGTIYVSGCIGLMPRTAIMAGDTVEDQTKQALLNLKAIVEAAGATV-QDIVKTTILLDDIADFAAVNSIYSKFFEGGSVPARSCFAAKQLPKAALVEIEAIAK 294
            I+R   GP     F+ + VHG  VY+AGQVA      V GQTR +L KI+  L + GTDK+ LL   IW+ D+ +   MN E+++W+   +  PVRA VQ+ + D SI VEI ATAA PS AK+I TEEAAAAVGPYNQG+   DG I+ SGCIGL P+T   AG++VE+QT Q L NL AI++A GA    DI+KTTILLDDI DFA VN+IY  FF  G VPAR+ F+AK LPK A VEIEAIA+
Sbjct:    9 IRRIGSGPPGLNLFSSVTVHGETVYIAGQVADDRREDVRGQTRQVLGKIEERLREGGTDKAHLLQVMIWLKDIGEVGVMNEEYDQWLAGIEGRPVRATVQAEMVDPSIRVEIMATAARPSRAKVIETEEAAAAVGPYNQGIRTADGLIFASGCIGLDPKTGEFAGESVEEQTHQVLRNLWAILKAGGAAEPSDIIKTTILLDDIGDFAKVNAIYQNFFGSGRVPARATFSAKALPKGAKVEIEAIAQ 255          
BLAST of Gvermi12390.t1 vs. uniprot
Match: A0A5J4YVR4_PORPP (RutC family protein n=1 Tax=Porphyridium purpureum TaxID=35688 RepID=A0A5J4YVR4_PORPP)

HSP 1 Score: 182 bits (461), Expect = 1.460e-50
Identity = 109/262 (41.60%), Postives = 159/262 (60.69%), Query Frame = 0
Query:   54 IKRFLPGPRFNQIVVHGGVVYLAGQVA--RGTDGSVAGQTRAILQKIDSLLEQAGTDKSRLLTTNIWISDMSKFSEMNAEWEKWVDKDNMPVRACVQSTLADGSITVEIQATAA---------LPSPA--KIISTEEAAAAVGPYNQGVVVDDGTIYVSGCIGLMPRTAIMAGDTVEDQTKQALLNLKAIVE--AAGATVQDIVKTTILLDDIADFAAVNSIYSKF---FEGGSVP--ARSCFAAKQLPKAALVEIEAIAKL 295
            I R+ PG  F+Q+VVHGG++YLAGQV        +V  QT + L KID LLE  G  KS +L+ ++W++D++  +EMNA W  WVD +  PVRA V++ L   ++ VE+Q  AA         LP     + + TE A  AVGPY+Q VVV+D  ++VSGC+GL P+T  +    +E Q  +AL NL+A+++  A+G+    IV+ T+++ D+ DF  +N +Y  F   +  G  P  AR+ F    LPK ALV I+AIA+L
Sbjct:  187 IVRYEPGTSFSQMVVHGGIIYLAGQVTDDEHQKTTVGEQTSSCLAKIDRLLEMGGGHKSSILSASVWLADIATVAEMNAVWNAWVDPECKPVRATVEAKLVRPTLLVEVQVVAAVGAADQSGALPKQPCLRSVQTELAGKAVGPYSQAVVVEDEYVFVSGCLGLDPKTDTLVDGGIETQAVRALANLEAVLKNSASGSVSPRIVRMTLMVKDMRDFGRINDLYGAFLNNYHEGQYPKPARTAFQVAALPKEALVMIDAIARL 448          
BLAST of Gvermi12390.t1 vs. uniprot
Match: A0A1X6PE35_PORUM (Uncharacterized protein n=1 Tax=Porphyra umbilicalis TaxID=2786 RepID=A0A1X6PE35_PORUM)

HSP 1 Score: 140 bits (354), Expect = 9.600e-38
Identity = 84/174 (48.28%), Postives = 111/174 (63.79%), Query Frame = 0
Query:  128 MNAEWEKWVDKDNMP-VRACVQSTLADGSITVEIQATAALPSPAKI--ISTEEAAAAVGPYNQGVVVDDGTIYVSGCIGLMPRTAIMAGDTVED----QTKQALLNLKAIVEAAGATVQDIVKTTILLDDIADFAAVNSIYSKFFEGGSVPARSCFAAKQLPKAALVEIEAIAK 294
            MN  W  W+        RA V + L    + VE+  TAA+P P  +  ++T+ AAAAVGPY+QGVVV+ G +YVSGC+GL  R+    G  VE     QTKQAL N+ A++ AAG TV D+VKT+I++ D+ DFAAVN +YS+   G + PAR+CF    LP  A+VEIE IAK
Sbjct:    1 MNEAWAAWLGPTTPRCTRATVGAPLVRPELLVEVVVTAAIPPPVPVGRVATDGAAAAVGPYSQGVVVEGGLVYVSGCVGL--RSPADGGGLVEGGVVAQTKQALANMSAVLAAAGCTVHDVVKTSIMVTDMGDFAAVNGVYSEVM-GDAKPARACFGVAALPVGAVVEIECIAK 171          
BLAST of Gvermi12390.t1 vs. uniprot
Match: A0A2S6R4D1_9PROT (2-iminobutanoate/2-iminopropanoate deaminase n=1 Tax=Alphaproteobacteria bacterium MarineAlpha10_Bin2 TaxID=2013104 RepID=A0A2S6R4D1_9PROT)

HSP 1 Score: 134 bits (337), Expect = 5.780e-36
Identity = 67/112 (59.82%), Postives = 81/112 (72.32%), Query Frame = 0
Query:   54 IKRFLPGPRFNQIVVHGGVVYLAGQVARGTDGSVAGQTRAILQKIDSLLEQAGTDKSRLLTTNIWISDMSKFSEMNAEWEKWVDKDNMPVRACVQSTLADGSITVEIQATAA 165
            I R  PGPR +Q VVH   VY AGQVA  +   VAGQTR +L KIDSLL +AG+DKS++L   IW++D+SKFSEMN+ W+ WVD DN PVRACV+S LA   + VEIQ  AA
Sbjct:    3 ITRIKPGPRMSQTVVHAHTVYTAGQVADDSSADVAGQTRQVLAKIDSLLAEAGSDKSKILKATIWLADISKFSEMNSVWDAWVDTDNPPVRACVESKLAVPELKVEIQVEAA 114          
BLAST of Gvermi12390.t1 vs. uniprot
Match: A0A2S6RH51_9PROT (2-iminobutanoate/2-iminopropanoate deaminase n=1 Tax=Alphaproteobacteria bacterium MarineAlpha10_Bin1 TaxID=2013103 RepID=A0A2S6RH51_9PROT)

HSP 1 Score: 131 bits (329), Expect = 9.040e-35
Identity = 63/112 (56.25%), Postives = 83/112 (74.11%), Query Frame = 0
Query:   54 IKRFLPGPRFNQIVVHGGVVYLAGQVARGTDGSVAGQTRAILQKIDSLLEQAGTDKSRLLTTNIWISDMSKFSEMNAEWEKWVDKDNMPVRACVQSTLADGSITVEIQATAA 165
            I R  PG R +Q VVHG  VY AGQ+A  +   VAGQTR +L KID LL +AG+DKS++L   IW++D+S+F+EMN+ W+ WVD+DN PVRACV+STLA  +++VEI   AA
Sbjct:    3 ITRIKPGARMSQCVVHGDTVYTAGQIADDSSEDVAGQTRQVLAKIDGLLAEAGSDKSKILKATIWLTDISRFNEMNSVWDAWVDQDNPPVRACVESTLAMPALSVEIMVEAA 114          
BLAST of Gvermi12390.t1 vs. uniprot
Match: A0A7C2J1A5_9BACT (RidA family protein n=1 Tax=Blastocatellia bacterium TaxID=2052146 RepID=A0A7C2J1A5_9BACT)

HSP 1 Score: 128 bits (322), Expect = 1.000e-33
Identity = 65/113 (57.52%), Postives = 80/113 (70.80%), Query Frame = 0
Query:   54 IKRFLPGPRFNQIVVHGGVVYLAGQVARGTDGSVAGQTRAILQKIDSLLEQAGTDKSRLLTTNIWISDMSKFSEMNAEWEKWVDKDNMPVRACVQSTLADGSITVEIQATAAL 166
            IKR   GPR +Q VVHG  VYLAGQVA      VAGQTR IL KI+ LL +AGTDKS+L++ N+W+SDM+ F+EMNA W+ WV + + P RACV+S LA   + VEI   AAL
Sbjct:    3 IKRIKVGPRMSQAVVHGNTVYLAGQVADDPSADVAGQTRQILTKIEGLLAEAGTDKSKLISANVWLSDMTTFNEMNAVWDAWVVQGDPPARACVESRLAWPELKVEIMVIAAL 115          
The following BLAST results are available for this feature:
BLAST of Gvermi12390.t1 vs. uniprot
Analysis Date: 2022-06-02 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A2V3J407_9FLOR1.740e-13573.29Reactive Intermediate Deaminase A, chloroplastic n... [more]
R7QTC6_CHOCR2.000e-10164.08Uncharacterized protein n=1 Tax=Chondrus crispus T... [more]
A0A5J4Z3P0_PORPP2.040e-8256.90Reactive Intermediate Deaminase A, chloroplastic n... [more]
M2XYU2_GALSU3.340e-8152.11TdcF protein n=1 Tax=Galdieria sulphuraria TaxID=1... [more]
A0A7S1XBY1_9RHOD5.760e-7655.47Hypothetical protein n=1 Tax=Compsopogon caeruleus... [more]
A0A5J4YVR4_PORPP1.460e-5041.60RutC family protein n=1 Tax=Porphyridium purpureum... [more]
A0A1X6PE35_PORUM9.600e-3848.28Uncharacterized protein n=1 Tax=Porphyra umbilical... [more]
A0A2S6R4D1_9PROT5.780e-3659.822-iminobutanoate/2-iminopropanoate deaminase n=1 T... [more]
A0A2S6RH51_9PROT9.040e-3556.252-iminobutanoate/2-iminopropanoate deaminase n=1 T... [more]
A0A7C2J1A5_9BACT1.000e-3357.52RidA family protein n=1 Tax=Blastocatellia bacteri... [more]

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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-06-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR035959RutC-like superfamilyGENE3D3.30.1330.40coord: 169..295
e-value: 1.8E-39
score: 136.7
IPR035959RutC-like superfamilyGENE3D3.30.1330.40coord: 54..166
e-value: 3.5E-30
score: 106.3
IPR035959RutC-like superfamilySUPERFAMILY55298YjgF-likecoord: 171..295
IPR035959RutC-like superfamilySUPERFAMILY55298YjgF-likecoord: 56..168
IPR006175YjgF/YER057c/UK114 familyPFAMPF01042Ribonuc_L-PSPcoord: 60..165
e-value: 9.6E-23
score: 80.5
coord: 177..294
e-value: 2.9E-34
score: 117.7
IPR006056RidA familyTIGRFAMTIGR00004TIGR00004coord: 171..293
e-value: 1.6E-42
score: 142.6
IPR035709RutC family, YoaB-likePANTHERPTHR47328FAMILY NOT NAMEDcoord: 188..294
coord: 53..166
IPR035709RutC family, YoaB-likeCDDcd06150YjgF_YER057c_UK114_like_2coord: 61..165
e-value: 4.95441E-51
score: 161.551
IPR019897RidA, conserved sitePROSITEPS01094UPF0076coord: 271..289
NoneNo IPR availableCDDcd00448YjgF_YER057c_UK114_familycoord: 185..293
e-value: 9.67175E-41
score: 135.379

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
ScGOVlb_3404contigScGOVlb_3404:4471442..4472332 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-06-01
Diamond blastp: OGS1.0 vs UniRef902022-06-02
Gracilaria vermiculophylla HapMaleFtJ_2017 male OGS1.02022-05-09
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
Gvermi12390.t1Gvermi12390.t1Gracilaria vermiculophylla HapMaleFtJ_2017 malemRNAScGOVlb_3404 4471442..4472332 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>Gvermi12390.t1 ID=Gvermi12390.t1|Name=Gvermi12390.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=polypeptide|length=297bp
MTNIACTFVSSFTPNGAYRINKFSVSSPKIQHSFARRPRITSVMTDNVRQ
HSDIKRFLPGPRFNQIVVHGGVVYLAGQVARGTDGSVAGQTRAILQKIDS
LLEQAGTDKSRLLTTNIWISDMSKFSEMNAEWEKWVDKDNMPVRACVQST
LADGSITVEIQATAALPSPAKIISTEEAAAAVGPYNQGVVVDDGTIYVSG
CIGLMPRTAIMAGDTVEDQTKQALLNLKAIVEAAGATVQDIVKTTILLDD
IADFAAVNSIYSKFFEGGSVPARSCFAAKQLPKAALVEIEAIAKLQ*
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR035959RutC-like_sf
IPR006175YjgF/YER057c/UK114
IPR006056RidA
IPR035709YoaB-like
IPR019897RidA_CS