Gvermi12347.t1 (mRNA) Gracilaria vermiculophylla HapMaleFtJ_2017 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	Gvermi12347.t1
Unique Name	Gvermi12347.t1
Type	mRNA
Organism	Gracilaria vermiculophylla HapMaleFtJ_2017 male (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
Sequence length	648

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
ScGOVlb_3404	contig	ScGOVlb_3404:4299306..4301249 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gracilaria vermiculophylla HapMaleFtJ_2017 male OGS1.0	2022-05-09

Properties


Property Name	Value
Seed ortholog	130081.XP_005708839.1
Preferred name	PGAM
PFAMs	Metalloenzyme,iPGM_N
Max annot lvl	2759\|Eukaryota
KEGG rclass	RC00536
KEGG ko	ko:K15633
KEGG Reaction	R01518
KEGG Pathway	ko00010,ko00260,ko00680,ko01100,ko01110,ko01120,ko01130,ko01200,ko01230,map00010,map00260,map00680,map01100,map01110,map01120,map01130,map01200,map01230
KEGG Module	M00001,M00002,M00003
GOs	GO:0003674,GO:0003824,GO:0004619,GO:0005575,GO:0005576,GO:0005622,GO:0005623,GO:0005737,GO:0005739,GO:0005740,GO:0005829,GO:0005886,GO:0005911,GO:0006950,GO:0007275,GO:0008150,GO:0009266,GO:0009409,GO:0009506,GO:0009507,GO:0009536,GO:0009555,GO:0009628,GO:0009987,GO:0010035,GO:0010038,GO:0010118,GO:0016020,GO:0016853,GO:0016866,GO:0016868,GO:0030054,GO:0031967,GO:0031975,GO:0032501,GO:0032502,GO:0042221,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0044422,GO:0044424,GO:0044429,GO:0044444,GO:0044446,GO:0044464,GO:0046537,GO:0046686,GO:0048046,GO:0048229,GO:0048856,GO:0050896,GO:0055044,GO:0071944
Evalue	3.27e-233
EggNOG OGs	COG0696@1\|root,KOG4513@2759\|Eukaryota
EC	5.4.2.12
Description	2,3-bisphosphoglycerate-independent phosphoglycerate mutase activity
COG category	G
BRITE	ko00000,ko00001,ko00002,ko01000

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
Gvermi12347	Gvermi12347	Gracilaria vermiculophylla HapMaleFtJ_2017 male	gene	ScGOVlb_3404 4299306..4301249 +

The following start_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gvermi12347.t1.start1	Gvermi12347.t1.start1	Gracilaria vermiculophylla HapMaleFtJ_2017 male	start_codon	ScGOVlb_3404 4299306..4299308 +

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gvermi12347.t1.CDS1	Gvermi12347.t1.CDS1	Gracilaria vermiculophylla HapMaleFtJ_2017 male	CDS	ScGOVlb_3404 4299306..4301249 +

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gvermi12347.t1.exon1	Gvermi12347.t1.exon1	Gracilaria vermiculophylla HapMaleFtJ_2017 male	exon	ScGOVlb_3404 4299306..4301249 +

The following stop_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gvermi12347.t1.stop1	Gvermi12347.t1.stop1	Gracilaria vermiculophylla HapMaleFtJ_2017 male	stop_codon	ScGOVlb_3404 4301247..4301249 +

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gvermi12347.t1	Gvermi12347.t1	Gracilaria vermiculophylla HapMaleFtJ_2017 male	polypeptide	ScGOVlb_3404 4299306..4301249 +

Sequences

The following sequences are available for this feature:

mRNA sequence
mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at ScGOVlb_3404:4299306..4301249+
coding sequence from alignment at ScGOVlb_3404:4299306..4301249+

mRNA sequence

>Gvermi12347.t1 ID=Gvermi12347.t1|Name=Gvermi12347.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=648bp
LHNFPVGAPFAPAQRASVHLHFAHVSPQSLDPSLVCHIYGPDDDGLEQLL
TPSPIRGNIVFKISQHQLQMASSSSAHTMQLPKKEGFEKPNGPVALIVMD
GVGQAPDAEWNAVTTSRTPFLDKLMAGEGPNGSKSLFCELDASGKSVGLP
SMGDMGNSEVGHNALGAGRVFDQGAKLVNNAFRSGDFKSEVWQWLVEKPV
ASDTSTFHMIGLYSDGNVHAHVNHVFQLIDAAVDDGVKRIRLHVLADGRD
VLDRSAIDYFGPLEKRLAVLRKEGIDIWVASGGGRMVTTMDRYEADWGIV
ENGWRAHCLGDTTLDTFKTCISAVEHYYEDDTMVDQYMPPFVIVDDDDNP
RGSMQDGDSVLFWNFRGDRAIEISAAFEAEEGEFSHFDRKRVPDIRYAGM
MQYDGDAGIPKRFLVSPPQIDNTVGEYVVKNGMKRFSVSETQKYGHVTYF
YNGNRAAKFDEEKEKYVCIPSYKQREHSRPWMRAAEISDSILEEMDSFNP
DLMVVNYANGDMVGHTGHMVASRLAMECVDLCLARVLPEIIKRDGVVILT
ADHGNCDIMAEVGKDGKPKEGNQPEGWKAKVSHTKQRVPCMIIGKEMHKY
EIDTSVRWGDDPACKHPGIANLGATVLNLLGLKEPANFLPSILVPKT*

spliced messenger RNA

>Gvermi12347.t1 ID=Gvermi12347.t1|Name=Gvermi12347.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=1944bp|location=Sequence derived from alignment at ScGOVlb_3404:4299306..4301249+ (Gracilaria vermiculophylla HapMaleFtJ_2017 male)|Notes=Excludes all bases but those of type(s): exon.  
TTGCACAACTTTCCCGTGGGAGCCCCCTTCGCCCCGGCACAACGAGCCAG
CGTTCACCTCCATTTTGCACACGTCTCGCCGCAGAGCCTAGATCCGAGTC
TTGTTTGCCACATATACGGACCAGACGACGACGGTCTAGAGCAACTGCTG
ACTCCGTCGCCCATCCGGGGAAACATCGTTTTCAAAATTTCACAACATCA
ACTACAAATGGCATCTTCAAGTTCTGCGCATACCATGCAGCTTCCGAAGA
AGGAAGGTTTCGAGAAGCCTAACGGTCCTGTCGCCCTCATTGTCATGGAC
GGTGTGGGTCAGGCGCCAGATGCCGAATGGAACGCGGTCACTACCTCACG
CACTCCGTTTCTAGACAAGCTCATGGCCGGTGAAGGCCCCAACGGCTCAA
AGTCTTTGTTCTGCGAATTAGACGCGTCTGGTAAATCTGTCGGCTTGCCG
AGCATGGGTGATATGGGCAACTCCGAAGTTGGTCACAACGCCCTCGGTGC
TGGTCGCGTCTTCGACCAGGGCGCGAAGCTCGTTAACAATGCTTTTCGCT
CCGGTGACTTTAAGAGCGAGGTCTGGCAATGGCTCGTTGAAAAACCAGTT
GCGAGTGACACGAGTACCTTTCACATGATTGGTCTGTACTCGGACGGAAA
TGTGCATGCCCATGTCAATCACGTTTTCCAGCTTATTGATGCAGCAGTGG
ATGATGGCGTGAAGAGAATTCGACTTCATGTGCTAGCCGATGGGCGTGAT
GTACTGGACAGATCCGCGATCGACTACTTTGGTCCACTCGAAAAGCGTCT
TGCCGTCTTGCGGAAAGAAGGAATCGATATTTGGGTTGCTAGTGGTGGTG
GTCGGATGGTTACCACCATGGATCGCTATGAGGCAGATTGGGGTATTGTT
GAAAACGGCTGGAGAGCGCACTGTCTCGGCGACACTACTCTGGATACTTT
CAAGACATGCATTTCTGCCGTAGAGCATTACTACGAGGATGACACTATGG
TTGATCAGTATATGCCTCCTTTCGTTATCGTTGACGACGATGATAATCCG
AGAGGGTCAATGCAAGACGGTGATTCTGTTCTTTTCTGGAACTTCCGAGG
AGATCGTGCCATTGAGATTTCAGCGGCGTTTGAAGCAGAAGAGGGAGAAT
TCAGCCATTTTGATCGCAAGCGTGTACCGGATATTCGCTACGCTGGTATG
ATGCAATACGACGGTGATGCCGGTATCCCTAAACGGTTTTTGGTTTCGCC
TCCACAAATAGATAACACTGTTGGTGAATATGTGGTCAAGAATGGGATGA
AACGCTTTTCCGTGTCTGAAACGCAAAAGTACGGACATGTTACATATTTC
TACAATGGGAACCGTGCTGCGAAATTTGACGAAGAAAAGGAGAAGTACGT
TTGCATTCCGTCCTACAAACAGAGAGAACATTCGAGGCCGTGGATGAGGG
CTGCGGAAATCTCGGATAGTATTCTGGAAGAAATGGACAGTTTTAATCCA
GACCTCATGGTTGTCAACTATGCCAATGGCGACATGGTAGGTCATACTGG
ACACATGGTTGCTTCCCGTCTTGCCATGGAATGTGTTGATCTTTGTCTAG
CTCGCGTTCTTCCAGAAATCATTAAGCGAGACGGAGTAGTTATTCTCACA
GCTGACCATGGGAATTGCGACATCATGGCTGAGGTCGGCAAAGATGGCAA
ACCGAAGGAAGGCAATCAACCTGAAGGATGGAAAGCAAAAGTTTCACATA
CGAAGCAGCGCGTGCCTTGCATGATCATTGGAAAAGAAATGCACAAGTAC
GAAATTGACACCTCGGTCAGGTGGGGAGATGATCCTGCCTGCAAGCATCC
TGGCATTGCAAACCTTGGGGCAACAGTTCTTAATTTGCTTGGACTTAAGG
AACCGGCTAACTTTTTGCCGTCAATCCTGGTCCCGAAAACCTAG

protein sequence of Gvermi12347.t1

>Gvermi12347.t1 ID=Gvermi12347.t1|Name=Gvermi12347.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=polypeptide|length=648bp
LHNFPVGAPFAPAQRASVHLHFAHVSPQSLDPSLVCHIYGPDDDGLEQLL
TPSPIRGNIVFKISQHQLQMASSSSAHTMQLPKKEGFEKPNGPVALIVMD
GVGQAPDAEWNAVTTSRTPFLDKLMAGEGPNGSKSLFCELDASGKSVGLP
SMGDMGNSEVGHNALGAGRVFDQGAKLVNNAFRSGDFKSEVWQWLVEKPV
ASDTSTFHMIGLYSDGNVHAHVNHVFQLIDAAVDDGVKRIRLHVLADGRD
VLDRSAIDYFGPLEKRLAVLRKEGIDIWVASGGGRMVTTMDRYEADWGIV
ENGWRAHCLGDTTLDTFKTCISAVEHYYEDDTMVDQYMPPFVIVDDDDNP
RGSMQDGDSVLFWNFRGDRAIEISAAFEAEEGEFSHFDRKRVPDIRYAGM
MQYDGDAGIPKRFLVSPPQIDNTVGEYVVKNGMKRFSVSETQKYGHVTYF
YNGNRAAKFDEEKEKYVCIPSYKQREHSRPWMRAAEISDSILEEMDSFNP
DLMVVNYANGDMVGHTGHMVASRLAMECVDLCLARVLPEIIKRDGVVILT
ADHGNCDIMAEVGKDGKPKEGNQPEGWKAKVSHTKQRVPCMIIGKEMHKY
EIDTSVRWGDDPACKHPGIANLGATVLNLLGLKEPANFLPSILVPKT*

mRNA from alignment at ScGOVlb_3404:4299306..4301249+

Legend: start_codonpolypeptideCDSexonstop_codon

Hold the cursor over a type above to highlight its positions in the sequence below.

>Gvermi12347.t1 ID=Gvermi12347.t1|Name=Gvermi12347.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=1944bp|location=Sequence derived from alignment at ScGOVlb_3404:4299306..4301249+ (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
TTGCACAACTTTCCCGTGGGAGCCCCCTTCGCCCCGGCACAACGAGCCAG
CGTTCACCTCCATTTTGCACACGTCTCGCCGCAGAGCCTAGATCCGAGTC
TTGTTTGCCACATATACGGACCAGACGACGACGGTCTAGAGCAACTGCTG
ACTCCGTCGCCCATCCGGGGAAACATCGTTTTCAAAATTTCACAACATCA
ACTACAAATGGCATCTTCAAGTTCTGCGCATACCATGCAGCTTCCGAAGA
AGGAAGGTTTCGAGAAGCCTAACGGTCCTGTCGCCCTCATTGTCATGGAC
GGTGTGGGTCAGGCGCCAGATGCCGAATGGAACGCGGTCACTACCTCACG
CACTCCGTTTCTAGACAAGCTCATGGCCGGTGAAGGCCCCAACGGCTCAA
AGTCTTTGTTCTGCGAATTAGACGCGTCTGGTAAATCTGTCGGCTTGCCG
AGCATGGGTGATATGGGCAACTCCGAAGTTGGTCACAACGCCCTCGGTGC
TGGTCGCGTCTTCGACCAGGGCGCGAAGCTCGTTAACAATGCTTTTCGCT
CCGGTGACTTTAAGAGCGAGGTCTGGCAATGGCTCGTTGAAAAACCAGTT
GCGAGTGACACGAGTACCTTTCACATGATTGGTCTGTACTCGGACGGAAA
TGTGCATGCCCATGTCAATCACGTTTTCCAGCTTATTGATGCAGCAGTGG
ATGATGGCGTGAAGAGAATTCGACTTCATGTGCTAGCCGATGGGCGTGAT
GTACTGGACAGATCCGCGATCGACTACTTTGGTCCACTCGAAAAGCGTCT
TGCCGTCTTGCGGAAAGAAGGAATCGATATTTGGGTTGCTAGTGGTGGTG
GTCGGATGGTTACCACCATGGATCGCTATGAGGCAGATTGGGGTATTGTT
GAAAACGGCTGGAGAGCGCACTGTCTCGGCGACACTACTCTGGATACTTT
CAAGACATGCATTTCTGCCGTAGAGCATTACTACGAGGATGACACTATGG
TTGATCAGTATATGCCTCCTTTCGTTATCGTTGACGACGATGATAATCCG
AGAGGGTCAATGCAAGACGGTGATTCTGTTCTTTTCTGGAACTTCCGAGG
AGATCGTGCCATTGAGATTTCAGCGGCGTTTGAAGCAGAAGAGGGAGAAT
TCAGCCATTTTGATCGCAAGCGTGTACCGGATATTCGCTACGCTGGTATG
ATGCAATACGACGGTGATGCCGGTATCCCTAAACGGTTTTTGGTTTCGCC
TCCACAAATAGATAACACTGTTGGTGAATATGTGGTCAAGAATGGGATGA
AACGCTTTTCCGTGTCTGAAACGCAAAAGTACGGACATGTTACATATTTC
TACAATGGGAACCGTGCTGCGAAATTTGACGAAGAAAAGGAGAAGTACGT
TTGCATTCCGTCCTACAAACAGAGAGAACATTCGAGGCCGTGGATGAGGG
CTGCGGAAATCTCGGATAGTATTCTGGAAGAAATGGACAGTTTTAATCCA
GACCTCATGGTTGTCAACTATGCCAATGGCGACATGGTAGGTCATACTGG
ACACATGGTTGCTTCCCGTCTTGCCATGGAATGTGTTGATCTTTGTCTAG
CTCGCGTTCTTCCAGAAATCATTAAGCGAGACGGAGTAGTTATTCTCACA
GCTGACCATGGGAATTGCGACATCATGGCTGAGGTCGGCAAAGATGGCAA
ACCGAAGGAAGGCAATCAACCTGAAGGATGGAAAGCAAAAGTTTCACATA
CGAAGCAGCGCGTGCCTTGCATGATCATTGGAAAAGAAATGCACAAGTAC
GAAATTGACACCTCGGTCAGGTGGGGAGATGATCCTGCCTGCAAGCATCC
TGGCATTGCAAACCTTGGGGCAACAGTTCTTAATTTGCTTGGACTTAAGG
AACCGGCTAACTTTTTGCCGTCAATCCTGGTCCCGAAAACCTAG

Coding sequence (CDS) from alignment at ScGOVlb_3404:4299306..4301249+

>Gvermi12347.t1 ID=Gvermi12347.t1|Name=Gvermi12347.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=CDS|length=1944bp|location=Sequence derived from alignment at ScGOVlb_3404:4299306..4301249+ (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
TTGCACAACTTTCCCGTGGGAGCCCCCTTCGCCCCGGCACAACGAGCCAG
CGTTCACCTCCATTTTGCACACGTCTCGCCGCAGAGCCTAGATCCGAGTC
TTGTTTGCCACATATACGGACCAGACGACGACGGTCTAGAGCAACTGCTG
ACTCCGTCGCCCATCCGGGGAAACATCGTTTTCAAAATTTCACAACATCA
ACTACAAATGGCATCTTCAAGTTCTGCGCATACCATGCAGCTTCCGAAGA
AGGAAGGTTTCGAGAAGCCTAACGGTCCTGTCGCCCTCATTGTCATGGAC
GGTGTGGGTCAGGCGCCAGATGCCGAATGGAACGCGGTCACTACCTCACG
CACTCCGTTTCTAGACAAGCTCATGGCCGGTGAAGGCCCCAACGGCTCAA
AGTCTTTGTTCTGCGAATTAGACGCGTCTGGTAAATCTGTCGGCTTGCCG
AGCATGGGTGATATGGGCAACTCCGAAGTTGGTCACAACGCCCTCGGTGC
TGGTCGCGTCTTCGACCAGGGCGCGAAGCTCGTTAACAATGCTTTTCGCT
CCGGTGACTTTAAGAGCGAGGTCTGGCAATGGCTCGTTGAAAAACCAGTT
GCGAGTGACACGAGTACCTTTCACATGATTGGTCTGTACTCGGACGGAAA
TGTGCATGCCCATGTCAATCACGTTTTCCAGCTTATTGATGCAGCAGTGG
ATGATGGCGTGAAGAGAATTCGACTTCATGTGCTAGCCGATGGGCGTGAT
GTACTGGACAGATCCGCGATCGACTACTTTGGTCCACTCGAAAAGCGTCT
TGCCGTCTTGCGGAAAGAAGGAATCGATATTTGGGTTGCTAGTGGTGGTG
GTCGGATGGTTACCACCATGGATCGCTATGAGGCAGATTGGGGTATTGTT
GAAAACGGCTGGAGAGCGCACTGTCTCGGCGACACTACTCTGGATACTTT
CAAGACATGCATTTCTGCCGTAGAGCATTACTACGAGGATGACACTATGG
TTGATCAGTATATGCCTCCTTTCGTTATCGTTGACGACGATGATAATCCG
AGAGGGTCAATGCAAGACGGTGATTCTGTTCTTTTCTGGAACTTCCGAGG
AGATCGTGCCATTGAGATTTCAGCGGCGTTTGAAGCAGAAGAGGGAGAAT
TCAGCCATTTTGATCGCAAGCGTGTACCGGATATTCGCTACGCTGGTATG
ATGCAATACGACGGTGATGCCGGTATCCCTAAACGGTTTTTGGTTTCGCC
TCCACAAATAGATAACACTGTTGGTGAATATGTGGTCAAGAATGGGATGA
AACGCTTTTCCGTGTCTGAAACGCAAAAGTACGGACATGTTACATATTTC
TACAATGGGAACCGTGCTGCGAAATTTGACGAAGAAAAGGAGAAGTACGT
TTGCATTCCGTCCTACAAACAGAGAGAACATTCGAGGCCGTGGATGAGGG
CTGCGGAAATCTCGGATAGTATTCTGGAAGAAATGGACAGTTTTAATCCA
GACCTCATGGTTGTCAACTATGCCAATGGCGACATGGTAGGTCATACTGG
ACACATGGTTGCTTCCCGTCTTGCCATGGAATGTGTTGATCTTTGTCTAG
CTCGCGTTCTTCCAGAAATCATTAAGCGAGACGGAGTAGTTATTCTCACA
GCTGACCATGGGAATTGCGACATCATGGCTGAGGTCGGCAAAGATGGCAA
ACCGAAGGAAGGCAATCAACCTGAAGGATGGAAAGCAAAAGTTTCACATA
CGAAGCAGCGCGTGCCTTGCATGATCATTGGAAAAGAAATGCACAAGTAC
GAAATTGACACCTCGGTCAGGTGGGGAGATGATCCTGCCTGCAAGCATCC
TGGCATTGCAAACCTTGGGGCAACAGTTCTTAATTTGCTTGGACTTAAGG
AACCGGCTAACTTTTTGCCGTCAATCCTGGTCCCGAAAACCTAG