Gvermi12365.t1 (mRNA) Gracilaria vermiculophylla HapMaleFtJ_2017 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGvermi12365.t1
Unique NameGvermi12365.t1
TypemRNA
OrganismGracilaria vermiculophylla HapMaleFtJ_2017 male (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
Sequence length339
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
ScGOVlb_3404contigScGOVlb_3404:4372361..4373377 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria vermiculophylla HapMaleFtJ_2017 male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog45351.EDO45438
PFAMsHis_Phos_2
Max annot lvl33208|Metazoa
KEGG rclassRC00017
KEGG koko:K14410,ko:K19283
KEGG ReactionR00548,R11527
KEGG Pathwayko00740,ko01100,ko04142,map00740,map01100,map04142
Evalue4.93e-11
EggNOG OGsKOG3720@1|root,KOG3720@2759|Eukaryota,38FTJ@33154|Opisthokonta,3B97H@33208|Metazoa
EC3.1.3.2,3.1.3.5
Descriptionacid phosphatase activity
COG categoryI
BRITEko00000,ko00001,ko01000
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Gvermi12365Gvermi12365Gracilaria vermiculophylla HapMaleFtJ_2017 malegeneScGOVlb_3404 4372361..4373749 -


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi12365.t1.stop1Gvermi12365.t1.stop1Gracilaria vermiculophylla HapMaleFtJ_2017 malestop_codonScGOVlb_3404 4372361..4372363 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi12365.t1.CDS1Gvermi12365.t1.CDS1Gracilaria vermiculophylla HapMaleFtJ_2017 maleCDSScGOVlb_3404 4372361..4373377 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi12365.t1.exon1Gvermi12365.t1.exon1Gracilaria vermiculophylla HapMaleFtJ_2017 maleexonScGOVlb_3404 4372361..4373377 -


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi12365.t1.start1Gvermi12365.t1.start1Gracilaria vermiculophylla HapMaleFtJ_2017 malestart_codonScGOVlb_3404 4373375..4373377 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi12365.t1Gvermi12365.t1Gracilaria vermiculophylla HapMaleFtJ_2017 malepolypeptideScGOVlb_3404 4372361..4373377 -


Sequences
The following sequences are available for this feature:

mRNA sequence

>Gvermi12365.t1 ID=Gvermi12365.t1|Name=Gvermi12365.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=339bp
MVFNSSEFDWIIRGYAICPKLASLFQDFVKGSEFEIHEKKDNAFVAGLAK
KLGHPKEEQNLEHVFNVYDEYNIINSGYDKSERFANIEKLPESDMNRLRE
IVDWYETTKFSYATHKIHVAGGLLKEILSHANNIDSTSKKKNFRIVEYSA
HYPTLLTLWATIRATIERESMPPANKLPEFGAAIIIEVHQDNSSRGDRVL
HFKWYQGGDGDPEVEPIAVGIPRCTDVTKGCSLQNFQRITALDSMGKKKF
CMDCEADLCDLDSRSIALATTTSDESVFCSVGKRVTAGAIGACVGLTLGL
LGAVLYIVLSGKKKRRDLESHARIVNMEQSTFHGEVHA*
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spliced messenger RNA

>Gvermi12365.t1 ID=Gvermi12365.t1|Name=Gvermi12365.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=1017bp|location=Sequence derived from alignment at ScGOVlb_3404:4372361..4373377- (Gracilaria vermiculophylla HapMaleFtJ_2017 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGGTTTTCAACAGCTCAGAATTTGACTGGATCATTCGCGGCTACGCCAT
ATGCCCGAAGTTGGCTTCGCTGTTTCAAGATTTTGTAAAGGGCTCAGAAT
TTGAAATTCATGAGAAAAAGGACAATGCTTTCGTCGCCGGCTTGGCAAAA
AAGTTGGGTCATCCCAAGGAGGAACAGAACCTGGAGCATGTGTTTAATGT
TTACGATGAATACAACATCATCAACAGTGGTTATGACAAAAGTGAGAGAT
TTGCCAATATTGAAAAGCTTCCTGAATCTGATATGAATCGTCTCAGAGAA
ATTGTGGACTGGTACGAGACCACCAAGTTCTCGTATGCCACTCACAAAAT
TCACGTTGCAGGTGGTCTCCTAAAGGAAATTTTGAGTCATGCGAATAACA
TAGATTCCACGTCCAAGAAGAAAAATTTTCGCATCGTCGAATACTCTGCG
CATTATCCCACACTTCTCACCTTGTGGGCAACCATTCGTGCCACCATCGA
ACGCGAATCAATGCCGCCTGCCAACAAACTCCCAGAATTTGGGGCCGCAA
TCATCATTGAAGTTCACCAAGACAATTCATCGAGAGGCGATCGCGTACTT
CACTTCAAATGGTATCAAGGTGGCGATGGCGATCCCGAAGTAGAGCCCAT
CGCTGTTGGTATTCCTCGTTGCACAGATGTCACAAAAGGATGTTCCCTTC
AGAATTTTCAACGAATCACAGCTCTGGACTCTATGGGCAAGAAGAAGTTT
TGCATGGATTGTGAGGCAGACTTGTGTGATCTTGACTCTCGGTCAATTGC
GCTCGCAACAACTACCAGCGACGAATCCGTGTTTTGTTCTGTTGGAAAGC
GGGTTACAGCCGGCGCTATTGGTGCTTGTGTAGGACTCACGCTTGGTTTG
CTCGGCGCCGTGCTGTATATTGTTCTCAGTGGCAAGAAAAAGAGGCGCGA
TCTTGAATCGCATGCAAGAATTGTGAACATGGAGCAGTCCACTTTCCATG
GTGAAGTTCACGCGTAA
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protein sequence of Gvermi12365.t1

>Gvermi12365.t1 ID=Gvermi12365.t1|Name=Gvermi12365.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=polypeptide|length=339bp
MVFNSSEFDWIIRGYAICPKLASLFQDFVKGSEFEIHEKKDNAFVAGLAK
KLGHPKEEQNLEHVFNVYDEYNIINSGYDKSERFANIEKLPESDMNRLRE
IVDWYETTKFSYATHKIHVAGGLLKEILSHANNIDSTSKKKNFRIVEYSA
HYPTLLTLWATIRATIERESMPPANKLPEFGAAIIIEVHQDNSSRGDRVL
HFKWYQGGDGDPEVEPIAVGIPRCTDVTKGCSLQNFQRITALDSMGKKKF
CMDCEADLCDLDSRSIALATTTSDESVFCSVGKRVTAGAIGACVGLTLGL
LGAVLYIVLSGKKKRRDLESHARIVNMEQSTFHGEVHA*
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mRNA from alignment at ScGOVlb_3404:4372361..4373377-

Legend: polypeptideCDSexonstart_codonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Gvermi12365.t1 ID=Gvermi12365.t1|Name=Gvermi12365.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=1017bp|location=Sequence derived from alignment at ScGOVlb_3404:4372361..4373377- (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
ATGGTTTTCAACAGCTCAGAATTTGACTGGATCATTCGCGGCTACGCCAT
ATGCCCGAAGTTGGCTTCGCTGTTTCAAGATTTTGTAAAGGGCTCAGAAT
TTGAAATTCATGAGAAAAAGGACAATGCTTTCGTCGCCGGCTTGGCAAAA
AAGTTGGGTCATCCCAAGGAGGAACAGAACCTGGAGCATGTGTTTAATGT
TTACGATGAATACAACATCATCAACAGTGGTTATGACAAAAGTGAGAGAT
TTGCCAATATTGAAAAGCTTCCTGAATCTGATATGAATCGTCTCAGAGAA
ATTGTGGACTGGTACGAGACCACCAAGTTCTCGTATGCCACTCACAAAAT
TCACGTTGCAGGTGGTCTCCTAAAGGAAATTTTGAGTCATGCGAATAACA
TAGATTCCACGTCCAAGAAGAAAAATTTTCGCATCGTCGAATACTCTGCG
CATTATCCCACACTTCTCACCTTGTGGGCAACCATTCGTGCCACCATCGA
ACGCGAATCAATGCCGCCTGCCAACAAACTCCCAGAATTTGGGGCCGCAA
TCATCATTGAAGTTCACCAAGACAATTCATCGAGAGGCGATCGCGTACTT
CACTTCAAATGGTATCAAGGTGGCGATGGCGATCCCGAAGTAGAGCCCAT
CGCTGTTGGTATTCCTCGTTGCACAGATGTCACAAAAGGATGTTCCCTTC
AGAATTTTCAACGAATCACAGCTCTGGACTCTATGGGCAAGAAGAAGTTT
TGCATGGATTGTGAGGCAGACTTGTGTGATCTTGACTCTCGGTCAATTGC
GCTCGCAACAACTACCAGCGACGAATCCGTGTTTTGTTCTGTTGGAAAGC
GGGTTACAGCCGGCGCTATTGGTGCTTGTGTAGGACTCACGCTTGGTTTG
CTCGGCGCCGTGCTGTATATTGTTCTCAGTGGCAAGAAAAAGAGGCGCGA
TCTTGAATCGCATGCAAGAATTGTGAACATGGAGCAGTCCACTTTCCATG
GTGAAGTTCACGCGTAA
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Coding sequence (CDS) from alignment at ScGOVlb_3404:4372361..4373377-

>Gvermi12365.t1 ID=Gvermi12365.t1|Name=Gvermi12365.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=CDS|length=1017bp|location=Sequence derived from alignment at ScGOVlb_3404:4372361..4373377- (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
ATGGTTTTCAACAGCTCAGAATTTGACTGGATCATTCGCGGCTACGCCAT
ATGCCCGAAGTTGGCTTCGCTGTTTCAAGATTTTGTAAAGGGCTCAGAAT
TTGAAATTCATGAGAAAAAGGACAATGCTTTCGTCGCCGGCTTGGCAAAA
AAGTTGGGTCATCCCAAGGAGGAACAGAACCTGGAGCATGTGTTTAATGT
TTACGATGAATACAACATCATCAACAGTGGTTATGACAAAAGTGAGAGAT
TTGCCAATATTGAAAAGCTTCCTGAATCTGATATGAATCGTCTCAGAGAA
ATTGTGGACTGGTACGAGACCACCAAGTTCTCGTATGCCACTCACAAAAT
TCACGTTGCAGGTGGTCTCCTAAAGGAAATTTTGAGTCATGCGAATAACA
TAGATTCCACGTCCAAGAAGAAAAATTTTCGCATCGTCGAATACTCTGCG
CATTATCCCACACTTCTCACCTTGTGGGCAACCATTCGTGCCACCATCGA
ACGCGAATCAATGCCGCCTGCCAACAAACTCCCAGAATTTGGGGCCGCAA
TCATCATTGAAGTTCACCAAGACAATTCATCGAGAGGCGATCGCGTACTT
CACTTCAAATGGTATCAAGGTGGCGATGGCGATCCCGAAGTAGAGCCCAT
CGCTGTTGGTATTCCTCGTTGCACAGATGTCACAAAAGGATGTTCCCTTC
AGAATTTTCAACGAATCACAGCTCTGGACTCTATGGGCAAGAAGAAGTTT
TGCATGGATTGTGAGGCAGACTTGTGTGATCTTGACTCTCGGTCAATTGC
GCTCGCAACAACTACCAGCGACGAATCCGTGTTTTGTTCTGTTGGAAAGC
GGGTTACAGCCGGCGCTATTGGTGCTTGTGTAGGACTCACGCTTGGTTTG
CTCGGCGCCGTGCTGTATATTGTTCTCAGTGGCAAGAAAAAGAGGCGCGA
TCTTGAATCGCATGCAAGAATTGTGAACATGGAGCAGTCCACTTTCCATG
GTGAAGTTCACGCGTAA
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