Gvermi12264.t1 (mRNA) Gracilaria vermiculophylla HapMaleFtJ_2017 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGvermi12264.t1
Unique NameGvermi12264.t1
TypemRNA
OrganismGracilaria vermiculophylla HapMaleFtJ_2017 male (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
Sequence length290
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
ScGOVlb_3404contigScGOVlb_3404:4030852..4031721 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria vermiculophylla HapMaleFtJ_2017 male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog8364.ENSXETP00000058181
Preferred nameSRM
PFAMsSpermine_synt_N,Spermine_synth
Max annot lvl33208|Metazoa
KEGG rclassRC00021,RC00053
KEGG koko:K00797
KEGG ReactionR01920,R02869,R08359
KEGG Pathwayko00270,ko00330,ko00410,ko00480,ko01100,map00270,map00330,map00410,map00480,map01100
KEGG ModuleM00034,M00133
GOsGO:0003674,GO:0003824,GO:0004766,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0006576,GO:0006595,GO:0006596,GO:0006807,GO:0008150,GO:0008152,GO:0008216,GO:0008295,GO:0009058,GO:0009308,GO:0009309,GO:0009987,GO:0010033,GO:0016740,GO:0016765,GO:0034097,GO:0034641,GO:0042221,GO:0042401,GO:0042802,GO:0042803,GO:0044106,GO:0044237,GO:0044249,GO:0044271,GO:0044424,GO:0044444,GO:0044464,GO:0046983,GO:0050896,GO:0051716,GO:0070887,GO:0071310,GO:0071345,GO:0071704,GO:0097164,GO:1901564,GO:1901566,GO:1901576,GO:1990823,GO:1990830
Evalue3.75e-133
EggNOG OGsCOG0421@1|root,KOG1562@2759|Eukaryota,39J87@33154|Opisthokonta,3BCX8@33208|Metazoa,3D093@33213|Bilateria,4873X@7711|Chordata,48XN6@7742|Vertebrata
EC2.5.1.16
DescriptionSpermidine synthase
COG categoryE
BRITEko00000,ko00001,ko00002,ko01000
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Gvermi12264Gvermi12264Gracilaria vermiculophylla HapMaleFtJ_2017 malegeneScGOVlb_3404 4030852..4031721 -


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi12264.t1.stop1Gvermi12264.t1.stop1Gracilaria vermiculophylla HapMaleFtJ_2017 malestop_codonScGOVlb_3404 4030852..4030854 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi12264.t1.CDS1Gvermi12264.t1.CDS1Gracilaria vermiculophylla HapMaleFtJ_2017 maleCDSScGOVlb_3404 4030852..4031721 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi12264.t1.exon1Gvermi12264.t1.exon1Gracilaria vermiculophylla HapMaleFtJ_2017 maleexonScGOVlb_3404 4030852..4031721 -


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi12264.t1.start1Gvermi12264.t1.start1Gracilaria vermiculophylla HapMaleFtJ_2017 malestart_codonScGOVlb_3404 4031719..4031721 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi12264.t1Gvermi12264.t1Gracilaria vermiculophylla HapMaleFtJ_2017 malepolypeptideScGOVlb_3404 4030852..4031721 -


Sequences
The following sequences are available for this feature:

mRNA sequence

>Gvermi12264.t1 ID=Gvermi12264.t1|Name=Gvermi12264.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=290bp
MDAIKDGWFMEKNSLWPGQAMSLEVEQVLEHCKSKYQDILVFRSKSYGNV
LVLDGIIQCTERDEFAYQEMMAHIPLFSHPNPEKVLIVGGGDGGVMREVL
KHPSVKKVVLCEIDEKVIEMAKKYLPTMSSSYSDERTEVLVKDGLKFMKG
TEEEFDVIITDSSDPIGPAKTLFGMSYYEIMHKALKPGGIICSQGECMWL
HAKLIQPLLWDCRRIYAVVEYAYTTIPTYPSGQIGFVLCSKDVNTKFRVP
LRQPHEDMLSNLQYYNTEIHTAAFVLPNFARRDILSQVP*
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spliced messenger RNA

>Gvermi12264.t1 ID=Gvermi12264.t1|Name=Gvermi12264.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=870bp|location=Sequence derived from alignment at ScGOVlb_3404:4030852..4031721- (Gracilaria vermiculophylla HapMaleFtJ_2017 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGGACGCCATAAAGGATGGATGGTTCATGGAAAAAAATTCTCTTTGGCC
TGGCCAGGCCATGAGCCTTGAAGTTGAACAGGTGTTGGAGCATTGCAAGT
CCAAGTATCAGGATATTTTGGTTTTTAGGTCCAAATCGTACGGGAATGTT
CTTGTTCTTGATGGTATTATTCAGTGCACAGAGCGTGACGAGTTTGCATA
CCAAGAGATGATGGCCCATATCCCCCTGTTCTCGCACCCCAATCCTGAAA
AAGTCCTCATTGTCGGTGGCGGTGATGGGGGTGTTATGAGAGAAGTCCTT
AAACATCCTTCTGTTAAAAAGGTTGTGCTTTGTGAAATTGATGAAAAAGT
TATTGAAATGGCCAAAAAGTATTTGCCAACAATGTCTTCGTCGTATTCTG
ATGAACGAACTGAGGTGCTGGTCAAGGACGGATTGAAATTCATGAAGGGA
ACAGAAGAAGAATTTGATGTTATCATAACCGATTCATCAGATCCTATAGG
CCCAGCTAAAACTCTGTTTGGGATGTCGTATTATGAAATCATGCATAAGG
CTTTGAAACCCGGTGGTATAATATGCTCTCAAGGCGAATGTATGTGGCTT
CATGCAAAACTCATCCAACCGCTTCTCTGGGATTGTAGAAGAATATATGC
AGTCGTAGAATACGCGTATACAACAATTCCAACATATCCTTCTGGACAAA
TTGGCTTCGTTCTGTGCTCAAAAGATGTGAACACAAAGTTTCGTGTCCCT
CTGCGACAGCCACATGAAGATATGTTATCTAATTTGCAGTACTATAATAC
TGAGATACATACAGCAGCGTTTGTTCTGCCCAACTTTGCGAGACGAGATA
TTTTATCCCAAGTGCCATGA
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protein sequence of Gvermi12264.t1

>Gvermi12264.t1 ID=Gvermi12264.t1|Name=Gvermi12264.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=polypeptide|length=290bp
MDAIKDGWFMEKNSLWPGQAMSLEVEQVLEHCKSKYQDILVFRSKSYGNV
LVLDGIIQCTERDEFAYQEMMAHIPLFSHPNPEKVLIVGGGDGGVMREVL
KHPSVKKVVLCEIDEKVIEMAKKYLPTMSSSYSDERTEVLVKDGLKFMKG
TEEEFDVIITDSSDPIGPAKTLFGMSYYEIMHKALKPGGIICSQGECMWL
HAKLIQPLLWDCRRIYAVVEYAYTTIPTYPSGQIGFVLCSKDVNTKFRVP
LRQPHEDMLSNLQYYNTEIHTAAFVLPNFARRDILSQVP*
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mRNA from alignment at ScGOVlb_3404:4030852..4031721-

Legend: polypeptideCDSexonstart_codonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Gvermi12264.t1 ID=Gvermi12264.t1|Name=Gvermi12264.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=870bp|location=Sequence derived from alignment at ScGOVlb_3404:4030852..4031721- (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
ATGGACGCCATAAAGGATGGATGGTTCATGGAAAAAAATTCTCTTTGGCC
TGGCCAGGCCATGAGCCTTGAAGTTGAACAGGTGTTGGAGCATTGCAAGT
CCAAGTATCAGGATATTTTGGTTTTTAGGTCCAAATCGTACGGGAATGTT
CTTGTTCTTGATGGTATTATTCAGTGCACAGAGCGTGACGAGTTTGCATA
CCAAGAGATGATGGCCCATATCCCCCTGTTCTCGCACCCCAATCCTGAAA
AAGTCCTCATTGTCGGTGGCGGTGATGGGGGTGTTATGAGAGAAGTCCTT
AAACATCCTTCTGTTAAAAAGGTTGTGCTTTGTGAAATTGATGAAAAAGT
TATTGAAATGGCCAAAAAGTATTTGCCAACAATGTCTTCGTCGTATTCTG
ATGAACGAACTGAGGTGCTGGTCAAGGACGGATTGAAATTCATGAAGGGA
ACAGAAGAAGAATTTGATGTTATCATAACCGATTCATCAGATCCTATAGG
CCCAGCTAAAACTCTGTTTGGGATGTCGTATTATGAAATCATGCATAAGG
CTTTGAAACCCGGTGGTATAATATGCTCTCAAGGCGAATGTATGTGGCTT
CATGCAAAACTCATCCAACCGCTTCTCTGGGATTGTAGAAGAATATATGC
AGTCGTAGAATACGCGTATACAACAATTCCAACATATCCTTCTGGACAAA
TTGGCTTCGTTCTGTGCTCAAAAGATGTGAACACAAAGTTTCGTGTCCCT
CTGCGACAGCCACATGAAGATATGTTATCTAATTTGCAGTACTATAATAC
TGAGATACATACAGCAGCGTTTGTTCTGCCCAACTTTGCGAGACGAGATA
TTTTATCCCAAGTGCCATGA
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Coding sequence (CDS) from alignment at ScGOVlb_3404:4030852..4031721-

>Gvermi12264.t1 ID=Gvermi12264.t1|Name=Gvermi12264.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=CDS|length=870bp|location=Sequence derived from alignment at ScGOVlb_3404:4030852..4031721- (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
ATGGACGCCATAAAGGATGGATGGTTCATGGAAAAAAATTCTCTTTGGCC
TGGCCAGGCCATGAGCCTTGAAGTTGAACAGGTGTTGGAGCATTGCAAGT
CCAAGTATCAGGATATTTTGGTTTTTAGGTCCAAATCGTACGGGAATGTT
CTTGTTCTTGATGGTATTATTCAGTGCACAGAGCGTGACGAGTTTGCATA
CCAAGAGATGATGGCCCATATCCCCCTGTTCTCGCACCCCAATCCTGAAA
AAGTCCTCATTGTCGGTGGCGGTGATGGGGGTGTTATGAGAGAAGTCCTT
AAACATCCTTCTGTTAAAAAGGTTGTGCTTTGTGAAATTGATGAAAAAGT
TATTGAAATGGCCAAAAAGTATTTGCCAACAATGTCTTCGTCGTATTCTG
ATGAACGAACTGAGGTGCTGGTCAAGGACGGATTGAAATTCATGAAGGGA
ACAGAAGAAGAATTTGATGTTATCATAACCGATTCATCAGATCCTATAGG
CCCAGCTAAAACTCTGTTTGGGATGTCGTATTATGAAATCATGCATAAGG
CTTTGAAACCCGGTGGTATAATATGCTCTCAAGGCGAATGTATGTGGCTT
CATGCAAAACTCATCCAACCGCTTCTCTGGGATTGTAGAAGAATATATGC
AGTCGTAGAATACGCGTATACAACAATTCCAACATATCCTTCTGGACAAA
TTGGCTTCGTTCTGTGCTCAAAAGATGTGAACACAAAGTTTCGTGTCCCT
CTGCGACAGCCACATGAAGATATGTTATCTAATTTGCAGTACTATAATAC
TGAGATACATACAGCAGCGTTTGTTCTGCCCAACTTTGCGAGACGAGATA
TTTTATCCCAAGTGCCATGA
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