Gvermi12242.t1 (mRNA) Gracilaria vermiculophylla HapMaleFtJ_2017 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	Gvermi12242.t1
Unique Name	Gvermi12242.t1
Type	mRNA
Organism	Gracilaria vermiculophylla HapMaleFtJ_2017 male (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
Sequence length	343

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
ScGOVlb_3404	contig	ScGOVlb_3404:3958386..3959414 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gracilaria vermiculophylla HapMaleFtJ_2017 male OGS1.0	2022-05-09

Properties


Property Name	Value
Seed ortholog	78898.MVEG_01951T0
Preferred name	TAD3
PFAMs	SET,dCMP_cyt_deam_1
Max annot lvl	4751\|Fungi
KEGG ko	ko:K07117,ko:K15442
GOs	GO:0002097,GO:0002100,GO:0003674,GO:0003824,GO:0004000,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005737,GO:0006139,GO:0006382,GO:0006396,GO:0006399,GO:0006400,GO:0006725,GO:0006807,GO:0008033,GO:0008150,GO:0008152,GO:0008251,GO:0009451,GO:0009987,GO:0010467,GO:0016070,GO:0016553,GO:0016787,GO:0016810,GO:0016814,GO:0019239,GO:0032991,GO:0034470,GO:0034641,GO:0034660,GO:0043170,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043412,GO:0044237,GO:0044238,GO:0044424,GO:0044464,GO:0046483,GO:0052717,GO:0052718,GO:0071704,GO:0090304,GO:1901360,GO:1902494
Evalue	4.68e-31
EggNOG OGs	COG0590@1\|root,KOG2771@2759\|Eukaryota,38EK3@33154\|Opisthokonta,3NW8T@4751\|Fungi,1GX06@112252\|Fungi incertae sedis
Description	Cytidine and deoxycytidylate deaminase zinc-binding region
COG category	A
BRITE	ko00000,ko03016

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
Gvermi12242	Gvermi12242	Gracilaria vermiculophylla HapMaleFtJ_2017 male	gene	ScGOVlb_3404 3958386..3959414 +

The following start_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gvermi12242.t1.start1	Gvermi12242.t1.start1	Gracilaria vermiculophylla HapMaleFtJ_2017 male	start_codon	ScGOVlb_3404 3958386..3958388 +

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gvermi12242.t1.CDS1	Gvermi12242.t1.CDS1	Gracilaria vermiculophylla HapMaleFtJ_2017 male	CDS	ScGOVlb_3404 3958386..3959414 +

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gvermi12242.t1.exon1	Gvermi12242.t1.exon1	Gracilaria vermiculophylla HapMaleFtJ_2017 male	exon	ScGOVlb_3404 3958386..3959414 +

The following stop_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gvermi12242.t1.stop1	Gvermi12242.t1.stop1	Gracilaria vermiculophylla HapMaleFtJ_2017 male	stop_codon	ScGOVlb_3404 3959412..3959414 +

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gvermi12242.t1	Gvermi12242.t1	Gracilaria vermiculophylla HapMaleFtJ_2017 male	polypeptide	ScGOVlb_3404 3958386..3959414 +

Sequences

The following sequences are available for this feature:

mRNA sequence
mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at ScGOVlb_3404:3958386..3959414+
coding sequence from alignment at ScGOVlb_3404:3958386..3959414+

mRNA sequence

>Gvermi12242.t1 ID=Gvermi12242.t1|Name=Gvermi12242.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=343bp
MPRFRSEGDYVADHEDEISKVLRQHVKQVGVNGAENGPRQPQTCTVLISS
IEPRHASKVMPILSEHFPLNDGLSHLKRVRRINTAKSRGEFHLEVVLCRE
EVWEHRTQEARHALLSFNLEPKQYMVPVAAPLSREELHQWSDIWPLVYRP
GKHRFTPPSSSELKDMYAQIDNVVKRSKMVEAPHCAVVATLIDPTTGKAV
AFAQDQSYRKADTSYNSITSDRRLKHAVMNCLASFASPHTPITDTECDAE
NARNKAQKLSRASCLPFDQYLCTGLDCYVTREPCVMCAMALLHSRIRRVV
FAAFNDDNVGGFSEAKIHNEPALNHRFEALIIPVEQINSCLK*

spliced messenger RNA

>Gvermi12242.t1 ID=Gvermi12242.t1|Name=Gvermi12242.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=1029bp|location=Sequence derived from alignment at ScGOVlb_3404:3958386..3959414+ (Gracilaria vermiculophylla HapMaleFtJ_2017 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGCCTCGGTTCAGATCTGAAGGAGATTACGTAGCCGATCATGAGGATGA
AATCTCGAAGGTTTTGCGTCAGCACGTGAAACAAGTCGGCGTAAATGGCG
CAGAAAACGGTCCTAGACAACCGCAAACATGTACAGTGCTCATTTCTTCG
ATCGAACCACGACACGCTAGCAAGGTCATGCCCATTCTGTCCGAGCATTT
TCCTCTCAATGACGGACTGTCTCATTTGAAGCGCGTCAGGAGAATCAACA
CGGCAAAATCCCGAGGAGAATTTCACTTGGAAGTGGTGCTATGTCGCGAA
GAAGTATGGGAGCATCGTACACAAGAAGCAAGACATGCACTTCTTTCCTT
TAATTTGGAACCGAAGCAGTACATGGTTCCGGTAGCAGCTCCCCTCTCGC
GCGAAGAACTGCATCAGTGGAGCGATATTTGGCCACTAGTATATAGACCC
GGAAAACACAGGTTCACACCACCCTCATCGAGTGAACTTAAAGATATGTA
TGCTCAGATTGACAACGTTGTAAAACGAAGCAAAATGGTTGAGGCGCCTC
ACTGCGCAGTAGTGGCTACATTGATTGATCCCACAACTGGAAAGGCTGTG
GCTTTCGCTCAGGATCAGTCTTATCGGAAGGCTGATACTTCTTACAACTC
TATCACGTCTGATAGGCGATTGAAGCATGCCGTTATGAATTGCCTTGCTT
CTTTTGCTTCTCCACACACTCCAATAACCGATACAGAATGCGATGCCGAA
AACGCGCGGAACAAAGCACAGAAATTATCACGGGCCAGTTGTCTCCCTTT
TGACCAATATCTGTGCACTGGTTTGGATTGCTACGTTACTCGGGAACCTT
GTGTTATGTGTGCGATGGCATTGTTGCACTCCCGAATTCGGCGAGTAGTT
TTCGCAGCTTTCAACGACGACAACGTCGGCGGATTCTCAGAAGCTAAGAT
TCACAATGAGCCTGCCTTGAACCATCGTTTTGAAGCCTTAATTATTCCAG
TTGAACAGATAAACTCGTGCTTGAAGTGA

protein sequence of Gvermi12242.t1

>Gvermi12242.t1 ID=Gvermi12242.t1|Name=Gvermi12242.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=polypeptide|length=343bp
MPRFRSEGDYVADHEDEISKVLRQHVKQVGVNGAENGPRQPQTCTVLISS
IEPRHASKVMPILSEHFPLNDGLSHLKRVRRINTAKSRGEFHLEVVLCRE
EVWEHRTQEARHALLSFNLEPKQYMVPVAAPLSREELHQWSDIWPLVYRP
GKHRFTPPSSSELKDMYAQIDNVVKRSKMVEAPHCAVVATLIDPTTGKAV
AFAQDQSYRKADTSYNSITSDRRLKHAVMNCLASFASPHTPITDTECDAE
NARNKAQKLSRASCLPFDQYLCTGLDCYVTREPCVMCAMALLHSRIRRVV
FAAFNDDNVGGFSEAKIHNEPALNHRFEALIIPVEQINSCLK*

mRNA from alignment at ScGOVlb_3404:3958386..3959414+

Legend: start_codonpolypeptideCDSexonstop_codon

Hold the cursor over a type above to highlight its positions in the sequence below.

>Gvermi12242.t1 ID=Gvermi12242.t1|Name=Gvermi12242.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=1029bp|location=Sequence derived from alignment at ScGOVlb_3404:3958386..3959414+ (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
ATGCCTCGGTTCAGATCTGAAGGAGATTACGTAGCCGATCATGAGGATGA
AATCTCGAAGGTTTTGCGTCAGCACGTGAAACAAGTCGGCGTAAATGGCG
CAGAAAACGGTCCTAGACAACCGCAAACATGTACAGTGCTCATTTCTTCG
ATCGAACCACGACACGCTAGCAAGGTCATGCCCATTCTGTCCGAGCATTT
TCCTCTCAATGACGGACTGTCTCATTTGAAGCGCGTCAGGAGAATCAACA
CGGCAAAATCCCGAGGAGAATTTCACTTGGAAGTGGTGCTATGTCGCGAA
GAAGTATGGGAGCATCGTACACAAGAAGCAAGACATGCACTTCTTTCCTT
TAATTTGGAACCGAAGCAGTACATGGTTCCGGTAGCAGCTCCCCTCTCGC
GCGAAGAACTGCATCAGTGGAGCGATATTTGGCCACTAGTATATAGACCC
GGAAAACACAGGTTCACACCACCCTCATCGAGTGAACTTAAAGATATGTA
TGCTCAGATTGACAACGTTGTAAAACGAAGCAAAATGGTTGAGGCGCCTC
ACTGCGCAGTAGTGGCTACATTGATTGATCCCACAACTGGAAAGGCTGTG
GCTTTCGCTCAGGATCAGTCTTATCGGAAGGCTGATACTTCTTACAACTC
TATCACGTCTGATAGGCGATTGAAGCATGCCGTTATGAATTGCCTTGCTT
CTTTTGCTTCTCCACACACTCCAATAACCGATACAGAATGCGATGCCGAA
AACGCGCGGAACAAAGCACAGAAATTATCACGGGCCAGTTGTCTCCCTTT
TGACCAATATCTGTGCACTGGTTTGGATTGCTACGTTACTCGGGAACCTT
GTGTTATGTGTGCGATGGCATTGTTGCACTCCCGAATTCGGCGAGTAGTT
TTCGCAGCTTTCAACGACGACAACGTCGGCGGATTCTCAGAAGCTAAGAT
TCACAATGAGCCTGCCTTGAACCATCGTTTTGAAGCCTTAATTATTCCAG
TTGAACAGATAAACTCGTGCTTGAAGTGA

Coding sequence (CDS) from alignment at ScGOVlb_3404:3958386..3959414+

>Gvermi12242.t1 ID=Gvermi12242.t1|Name=Gvermi12242.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=CDS|length=1029bp|location=Sequence derived from alignment at ScGOVlb_3404:3958386..3959414+ (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
ATGCCTCGGTTCAGATCTGAAGGAGATTACGTAGCCGATCATGAGGATGA
AATCTCGAAGGTTTTGCGTCAGCACGTGAAACAAGTCGGCGTAAATGGCG
CAGAAAACGGTCCTAGACAACCGCAAACATGTACAGTGCTCATTTCTTCG
ATCGAACCACGACACGCTAGCAAGGTCATGCCCATTCTGTCCGAGCATTT
TCCTCTCAATGACGGACTGTCTCATTTGAAGCGCGTCAGGAGAATCAACA
CGGCAAAATCCCGAGGAGAATTTCACTTGGAAGTGGTGCTATGTCGCGAA
GAAGTATGGGAGCATCGTACACAAGAAGCAAGACATGCACTTCTTTCCTT
TAATTTGGAACCGAAGCAGTACATGGTTCCGGTAGCAGCTCCCCTCTCGC
GCGAAGAACTGCATCAGTGGAGCGATATTTGGCCACTAGTATATAGACCC
GGAAAACACAGGTTCACACCACCCTCATCGAGTGAACTTAAAGATATGTA
TGCTCAGATTGACAACGTTGTAAAACGAAGCAAAATGGTTGAGGCGCCTC
ACTGCGCAGTAGTGGCTACATTGATTGATCCCACAACTGGAAAGGCTGTG
GCTTTCGCTCAGGATCAGTCTTATCGGAAGGCTGATACTTCTTACAACTC
TATCACGTCTGATAGGCGATTGAAGCATGCCGTTATGAATTGCCTTGCTT
CTTTTGCTTCTCCACACACTCCAATAACCGATACAGAATGCGATGCCGAA
AACGCGCGGAACAAAGCACAGAAATTATCACGGGCCAGTTGTCTCCCTTT
TGACCAATATCTGTGCACTGGTTTGGATTGCTACGTTACTCGGGAACCTT
GTGTTATGTGTGCGATGGCATTGTTGCACTCCCGAATTCGGCGAGTAGTT
TTCGCAGCTTTCAACGACGACAACGTCGGCGGATTCTCAGAAGCTAAGAT
TCACAATGAGCCTGCCTTGAACCATCGTTTTGAAGCCTTAATTATTCCAG
TTGAACAGATAAACTCGTGCTTGAAGTGA