Gvermi12511.t1 (mRNA) Gracilaria vermiculophylla HapMaleFtJ_2017 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGvermi12511.t1
Unique NameGvermi12511.t1
TypemRNA
OrganismGracilaria vermiculophylla HapMaleFtJ_2017 male (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
Sequence length495
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
ScGOVlb_3404contigScGOVlb_3404:5947133..5948617 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria vermiculophylla HapMaleFtJ_2017 male OGS1.02022-05-09
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Gvermi12511Gvermi12511Gracilaria vermiculophylla HapMaleFtJ_2017 malegeneScGOVlb_3404 5947133..5948617 -


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi12511.t1.stop1Gvermi12511.t1.stop1Gracilaria vermiculophylla HapMaleFtJ_2017 malestop_codonScGOVlb_3404 5947133..5947135 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi12511.t1.CDS1Gvermi12511.t1.CDS1Gracilaria vermiculophylla HapMaleFtJ_2017 maleCDSScGOVlb_3404 5947133..5948617 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi12511.t1.exon1Gvermi12511.t1.exon1Gracilaria vermiculophylla HapMaleFtJ_2017 maleexonScGOVlb_3404 5947133..5948617 -


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi12511.t1.start1Gvermi12511.t1.start1Gracilaria vermiculophylla HapMaleFtJ_2017 malestart_codonScGOVlb_3404 5948615..5948617 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi12511.t1Gvermi12511.t1Gracilaria vermiculophylla HapMaleFtJ_2017 malepolypeptideScGOVlb_3404 5947133..5948617 -


Sequences
The following sequences are available for this feature:

mRNA sequence

>Gvermi12511.t1 ID=Gvermi12511.t1|Name=Gvermi12511.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=495bp
MSLNLREIERGIGIDLLRRPVVTSMLNAYLLRLFADAFLQPTEEDDDDHF
DAYDDVRKGHEEVGCAKSPLSEKLAASSIFLLTHFIQLIGLAESLVWIVI
GLLYKAIRLPRVYGFEKMVLDLSVLLFKPSVRYVKKTLRFQCRPGQKVPH
LQLSRSGFGSMVITVVSSEESLTRDTRALLQMLRYLNSTTVAFWTDESVV
MVGVNKNVERALCKLGSEPIKIDLGWHKDVIEGTNFKMEAVFTKEHLRVM
ESGIQSVGRRAVIVELCAQFETTNLELLVKSLSQFAAVCEAYERGLRMFN
GKRVSIYAVGLALCIALIVFYDGLPGLLQPSVDVLPLAIGAFTLWMTLGK
SAALGETEERTTYTPYNRENILLAYHGLARIEPDVRNVCWVPEVHREEHA
EVDEHDTVDGSLSVLEAAVCLSIFEHFGHFVKWKGSRLLIDRFEVRSSGE
KGLAHIVGVQRLRSLAALRLCEHAPVVRRLGAPPAENAEPDGAV*
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spliced messenger RNA

>Gvermi12511.t1 ID=Gvermi12511.t1|Name=Gvermi12511.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=1485bp|location=Sequence derived from alignment at ScGOVlb_3404:5947133..5948617- (Gracilaria vermiculophylla HapMaleFtJ_2017 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGTCTCTCAACCTGCGCGAGATCGAGCGTGGCATCGGCATCGACTTGTT
GAGGCGCCCCGTTGTGACCTCCATGCTCAATGCCTATCTGCTGCGCCTGT
TTGCAGACGCCTTCCTGCAGCCCACGGAGGAAGATGATGACGACCATTTC
GACGCCTACGACGATGTTCGCAAGGGCCACGAGGAAGTGGGCTGCGCAAA
AAGCCCCCTATCCGAAAAGCTCGCCGCCTCCTCCATCTTCTTGCTCACGC
ACTTTATCCAGTTGATTGGCTTAGCAGAGAGCTTGGTGTGGATCGTCATA
GGCCTGTTGTACAAGGCCATTCGGCTGCCTAGGGTGTACGGCTTTGAGAA
GATGGTGTTGGACCTCTCCGTGCTGCTATTCAAGCCGTCGGTGCGCTACG
TGAAGAAGACGCTGCGCTTTCAGTGCCGACCAGGGCAAAAGGTGCCGCAT
CTCCAGTTGTCCAGGTCGGGTTTCGGTTCCATGGTTATCACGGTCGTGAG
CTCGGAAGAGTCGCTCACCAGAGACACGCGCGCACTGCTGCAGATGTTGC
GCTATCTCAACTCCACGACGGTGGCGTTCTGGACGGATGAATCGGTCGTC
ATGGTGGGCGTCAACAAGAACGTTGAGCGCGCGTTGTGCAAGCTAGGCAG
CGAGCCCATCAAGATCGACCTAGGCTGGCACAAGGACGTGATCGAGGGCA
CCAATTTCAAGATGGAAGCGGTGTTTACTAAGGAGCACCTGCGCGTGATG
GAGAGCGGCATCCAGTCGGTGGGGCGCCGGGCGGTGATTGTGGAGCTGTG
CGCGCAGTTTGAGACAACCAACTTGGAGCTGCTGGTCAAATCGTTGAGCC
AGTTTGCGGCGGTGTGCGAGGCGTACGAGCGCGGGCTGCGGATGTTCAAC
GGCAAGCGCGTGTCGATCTACGCGGTGGGGCTGGCGCTGTGCATTGCGCT
GATTGTGTTCTACGACGGTTTGCCGGGGCTGCTGCAGCCGTCGGTGGACG
TGCTACCGCTGGCCATAGGTGCTTTCACGTTGTGGATGACGCTAGGCAAG
AGCGCGGCGCTGGGTGAGACGGAGGAGAGGACGACGTACACGCCGTACAA
CCGCGAAAACATTCTGCTGGCGTATCACGGGCTAGCGCGCATCGAGCCGG
ACGTTCGGAATGTGTGCTGGGTGCCGGAGGTGCACCGCGAGGAGCACGCG
GAAGTGGACGAGCACGACACAGTGGATGGGTCGCTGTCGGTGCTGGAGGC
GGCGGTGTGCCTTAGCATTTTCGAGCACTTTGGGCACTTCGTCAAGTGGA
AGGGGTCGCGGCTTCTCATCGACCGCTTCGAGGTGCGAAGCAGCGGCGAG
AAAGGGCTGGCGCACATTGTGGGCGTGCAACGGCTGCGCAGTCTGGCGGC
GCTGCGCCTCTGCGAGCACGCGCCCGTTGTGCGTCGGCTCGGCGCGCCCC
CCGCCGAAAACGCCGAACCGGACGGAGCCGTATGA
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protein sequence of Gvermi12511.t1

>Gvermi12511.t1 ID=Gvermi12511.t1|Name=Gvermi12511.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=polypeptide|length=495bp
MSLNLREIERGIGIDLLRRPVVTSMLNAYLLRLFADAFLQPTEEDDDDHF
DAYDDVRKGHEEVGCAKSPLSEKLAASSIFLLTHFIQLIGLAESLVWIVI
GLLYKAIRLPRVYGFEKMVLDLSVLLFKPSVRYVKKTLRFQCRPGQKVPH
LQLSRSGFGSMVITVVSSEESLTRDTRALLQMLRYLNSTTVAFWTDESVV
MVGVNKNVERALCKLGSEPIKIDLGWHKDVIEGTNFKMEAVFTKEHLRVM
ESGIQSVGRRAVIVELCAQFETTNLELLVKSLSQFAAVCEAYERGLRMFN
GKRVSIYAVGLALCIALIVFYDGLPGLLQPSVDVLPLAIGAFTLWMTLGK
SAALGETEERTTYTPYNRENILLAYHGLARIEPDVRNVCWVPEVHREEHA
EVDEHDTVDGSLSVLEAAVCLSIFEHFGHFVKWKGSRLLIDRFEVRSSGE
KGLAHIVGVQRLRSLAALRLCEHAPVVRRLGAPPAENAEPDGAV*
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mRNA from alignment at ScGOVlb_3404:5947133..5948617-

Legend: polypeptideCDSexonstart_codonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Gvermi12511.t1 ID=Gvermi12511.t1|Name=Gvermi12511.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=1485bp|location=Sequence derived from alignment at ScGOVlb_3404:5947133..5948617- (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
ATGTCTCTCAACCTGCGCGAGATCGAGCGTGGCATCGGCATCGACTTGTT
GAGGCGCCCCGTTGTGACCTCCATGCTCAATGCCTATCTGCTGCGCCTGT
TTGCAGACGCCTTCCTGCAGCCCACGGAGGAAGATGATGACGACCATTTC
GACGCCTACGACGATGTTCGCAAGGGCCACGAGGAAGTGGGCTGCGCAAA
AAGCCCCCTATCCGAAAAGCTCGCCGCCTCCTCCATCTTCTTGCTCACGC
ACTTTATCCAGTTGATTGGCTTAGCAGAGAGCTTGGTGTGGATCGTCATA
GGCCTGTTGTACAAGGCCATTCGGCTGCCTAGGGTGTACGGCTTTGAGAA
GATGGTGTTGGACCTCTCCGTGCTGCTATTCAAGCCGTCGGTGCGCTACG
TGAAGAAGACGCTGCGCTTTCAGTGCCGACCAGGGCAAAAGGTGCCGCAT
CTCCAGTTGTCCAGGTCGGGTTTCGGTTCCATGGTTATCACGGTCGTGAG
CTCGGAAGAGTCGCTCACCAGAGACACGCGCGCACTGCTGCAGATGTTGC
GCTATCTCAACTCCACGACGGTGGCGTTCTGGACGGATGAATCGGTCGTC
ATGGTGGGCGTCAACAAGAACGTTGAGCGCGCGTTGTGCAAGCTAGGCAG
CGAGCCCATCAAGATCGACCTAGGCTGGCACAAGGACGTGATCGAGGGCA
CCAATTTCAAGATGGAAGCGGTGTTTACTAAGGAGCACCTGCGCGTGATG
GAGAGCGGCATCCAGTCGGTGGGGCGCCGGGCGGTGATTGTGGAGCTGTG
CGCGCAGTTTGAGACAACCAACTTGGAGCTGCTGGTCAAATCGTTGAGCC
AGTTTGCGGCGGTGTGCGAGGCGTACGAGCGCGGGCTGCGGATGTTCAAC
GGCAAGCGCGTGTCGATCTACGCGGTGGGGCTGGCGCTGTGCATTGCGCT
GATTGTGTTCTACGACGGTTTGCCGGGGCTGCTGCAGCCGTCGGTGGACG
TGCTACCGCTGGCCATAGGTGCTTTCACGTTGTGGATGACGCTAGGCAAG
AGCGCGGCGCTGGGTGAGACGGAGGAGAGGACGACGTACACGCCGTACAA
CCGCGAAAACATTCTGCTGGCGTATCACGGGCTAGCGCGCATCGAGCCGG
ACGTTCGGAATGTGTGCTGGGTGCCGGAGGTGCACCGCGAGGAGCACGCG
GAAGTGGACGAGCACGACACAGTGGATGGGTCGCTGTCGGTGCTGGAGGC
GGCGGTGTGCCTTAGCATTTTCGAGCACTTTGGGCACTTCGTCAAGTGGA
AGGGGTCGCGGCTTCTCATCGACCGCTTCGAGGTGCGAAGCAGCGGCGAG
AAAGGGCTGGCGCACATTGTGGGCGTGCAACGGCTGCGCAGTCTGGCGGC
GCTGCGCCTCTGCGAGCACGCGCCCGTTGTGCGTCGGCTCGGCGCGCCCC
CCGCCGAAAACGCCGAACCGGACGGAGCCGTATGA
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Coding sequence (CDS) from alignment at ScGOVlb_3404:5947133..5948617-

>Gvermi12511.t1 ID=Gvermi12511.t1|Name=Gvermi12511.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=CDS|length=1485bp|location=Sequence derived from alignment at ScGOVlb_3404:5947133..5948617- (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
ATGTCTCTCAACCTGCGCGAGATCGAGCGTGGCATCGGCATCGACTTGTT
GAGGCGCCCCGTTGTGACCTCCATGCTCAATGCCTATCTGCTGCGCCTGT
TTGCAGACGCCTTCCTGCAGCCCACGGAGGAAGATGATGACGACCATTTC
GACGCCTACGACGATGTTCGCAAGGGCCACGAGGAAGTGGGCTGCGCAAA
AAGCCCCCTATCCGAAAAGCTCGCCGCCTCCTCCATCTTCTTGCTCACGC
ACTTTATCCAGTTGATTGGCTTAGCAGAGAGCTTGGTGTGGATCGTCATA
GGCCTGTTGTACAAGGCCATTCGGCTGCCTAGGGTGTACGGCTTTGAGAA
GATGGTGTTGGACCTCTCCGTGCTGCTATTCAAGCCGTCGGTGCGCTACG
TGAAGAAGACGCTGCGCTTTCAGTGCCGACCAGGGCAAAAGGTGCCGCAT
CTCCAGTTGTCCAGGTCGGGTTTCGGTTCCATGGTTATCACGGTCGTGAG
CTCGGAAGAGTCGCTCACCAGAGACACGCGCGCACTGCTGCAGATGTTGC
GCTATCTCAACTCCACGACGGTGGCGTTCTGGACGGATGAATCGGTCGTC
ATGGTGGGCGTCAACAAGAACGTTGAGCGCGCGTTGTGCAAGCTAGGCAG
CGAGCCCATCAAGATCGACCTAGGCTGGCACAAGGACGTGATCGAGGGCA
CCAATTTCAAGATGGAAGCGGTGTTTACTAAGGAGCACCTGCGCGTGATG
GAGAGCGGCATCCAGTCGGTGGGGCGCCGGGCGGTGATTGTGGAGCTGTG
CGCGCAGTTTGAGACAACCAACTTGGAGCTGCTGGTCAAATCGTTGAGCC
AGTTTGCGGCGGTGTGCGAGGCGTACGAGCGCGGGCTGCGGATGTTCAAC
GGCAAGCGCGTGTCGATCTACGCGGTGGGGCTGGCGCTGTGCATTGCGCT
GATTGTGTTCTACGACGGTTTGCCGGGGCTGCTGCAGCCGTCGGTGGACG
TGCTACCGCTGGCCATAGGTGCTTTCACGTTGTGGATGACGCTAGGCAAG
AGCGCGGCGCTGGGTGAGACGGAGGAGAGGACGACGTACACGCCGTACAA
CCGCGAAAACATTCTGCTGGCGTATCACGGGCTAGCGCGCATCGAGCCGG
ACGTTCGGAATGTGTGCTGGGTGCCGGAGGTGCACCGCGAGGAGCACGCG
GAAGTGGACGAGCACGACACAGTGGATGGGTCGCTGTCGGTGCTGGAGGC
GGCGGTGTGCCTTAGCATTTTCGAGCACTTTGGGCACTTCGTCAAGTGGA
AGGGGTCGCGGCTTCTCATCGACCGCTTCGAGGTGCGAAGCAGCGGCGAG
AAAGGGCTGGCGCACATTGTGGGCGTGCAACGGCTGCGCAGTCTGGCGGC
GCTGCGCCTCTGCGAGCACGCGCCCGTTGTGCGTCGGCTCGGCGCGCCCC
CCGCCGAAAACGCCGAACCGGACGGAGCCGTATGA
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